Abstract
Endometriosis is a complex disease characterized by inflammation and the growth of endometrial- like glands and stroma
outside the uterine cavity. The pathophysiology of endometriosis is not entirely understood, however, with a prevalence
of ~10% of women in their reproductive years, the disease symptoms significantly affect the quality of life of millions
of women globally. Metabolomic studies have previously identified specific metabolites that could be a signature of
endometriosis. This approach could potentially be used as a non-invasive tool for early diagnosis and provide a better
understanding of endometriosis pathophysiology. This review aims to provide insight as to how endometriosis affects the
metabolome by reviewing different studies that have used this approach to design follow-up studies. The search query
included the term 'endometriosis' in combination with 'metabolomics', 'lipidomics', or 'sphingolipidomics' published
between 2012 and 2020. We included studies in humans and animal models. Most studies reported differences in the
metabolome of subjects with endometriosis in comparison to healthy controls and used samples taken from serum,
endometrial tissue, follicular fluid, urine, peritoneal fluid, or endometrial fluid. Statistically significant metabolites
contributed to group separation between patients and healthy controls. Reported metabolites included amino acids,
lipids, organic acids, and other organic compounds. Differences in methods, analytical techniques, and the presence of
confounding factors can interfere with results and interpretation of data. Metabolomics seems to be a promising tool for
identifying significant metabolites in patients with endometriosis. Nonetheless, more investigation is needed in order to
understand the significance of the study results.
Lay summary
Endometriosis is a chronic disease affecting the quality of life in one out of every ten women during their reproductive
years, causing pain and infertility. It is characterized by inflammation and growth of tissue like the endometrium (uterus
lining) outside the uterine cavity. Studies have searched for a predictor of endometriosis-associated changes by observing
small molecules necessary for metabolism on a large scale (metabolomics). Metabolomics could serve to resolve one of
the biggest challenges that patients with endometriosis face: a delay in diagnosis. In this review, the authors summarize
identified potential biomarkers from various bodily fluids and tissues that are characteristic of metabolic processes
observed in endometriosis. Biomarkers include cell growth, cell survival, high energy demand, oxidative stress, and fatty
acid levels. A metabolomics approach offers promise as a non-invasive tool to identify significant metabolite changes
in patients with endometriosis, potentially leading to earlier diagnoses and new opportunities for back-translational
strategies.
Key Words endometriosis metabolomics human subjects animal models
Reproduction and Fertility (2021) 2 R35–R50
-20-0047ID: XX-XXXX;
2 2
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R362:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
Introduction
Endometriosis (EMT) is a chronic inflammatory disease
characterized by the presence of endometrial-like glands
and stroma that can be present within the peritoneal cavity,
ovaries, rectovaginal septum, fossa ovarica, uterosacral
ligaments, and posterior cul-de-sac ( Burney & Giudice
2012, Mehedintu et al. 2014, Zondervan et al. 2020). The
disease affects women during their reproductive ages
(Parasar et al. 2017). As reviewed by Parasar et al. (2017),
some risk factors include earlier age at menarche, shorter
menstrual cycle, taller height, use of alcohol, and caffeine
intake. The clinical presentation of endometriosis can
vary from woman to woman, but symptoms commonly
reported are dysmenorrhea, dyspareunia, dysuria,
bleeding in between menstrual cycles, infertility, pelvic
pain, painful defecation, and gastrointestinal symptoms
(Sinaii et al. 2008, Mehedintu et al. 2014). Although some
women are asymptomatic, those who experience these
chronic symptoms most often suffer from emotional
distress and reduced quality of life, with high levels of
stress, anxiety, and depression (Luisi et al. 2015, Appleyard
et al. 2020). In fact, it has been demonstrated in an animal
model of endometriosis that stress can exacerbate the size
and presence of endometriotic lesions (Cuevas et al. 2012,
Appleyard et al. 2015 ). Thus, having the disease may
create a cycle of emotional distress that will worsen the
symptoms continuously.
The American Society for Reproductive Medicine has
classified endometriosis patients within several stages:
stage I (minimal), stage II (mild), stage III (moderate)
and stage IV (severe). The classification is based on the
morphology, number, size, and location of endometriotic
lesions ( American Society for Reproductive Medicine
1997). Interestingly, there is no association between
advanced stages and severity of symptoms (Endometriosis
GIplS 2001 , Hassa et al. 2005 , Sinaii et al. 2008 ). The
confirmatory diagnostic tool is a laparoscopic surgery
with histological analysis of a tissue biopsy. This can be
complemented by various imaging technologies including
ultrasound, MRI and CT (Parasar et al. 2017). Nonetheless,
some patients may have atypical or inconsistent
symptoms, which delays the diagnosis for approximately
8 to 11 years ( Hadfield et al. 1996 ). In addition, the
cause and mechanisms of endometriosis are not well
understood. There are several well-accepted theories that
could potentially explain the etiology of endometriosis
but have not been confirmed (Sampson 1927, Gruenwald
1942, Szyllo et al. 2003, Wu & Ho 2003).
In this context, we have seen that many aspects
of endometriosis, such as understanding the
pathophysiology, delayed and invasive diagnosis,
inconsistent clinical presentation, and unknown etiology,
present a challenge for the scientific and medical
community which consequently affects patients’ health.
Several studies have acknowledged these unresolved
issues by using a metabolomics-based approach to provide
a better understanding of the pathophysiology and
potentially mine this information for early diagnosis of
endometriosis (Dutta et al. 2012, Ghazi et al. 2016, Dutta
et al. 2018, Li et al. 2018a,b).
Metabolomics is the study of small molecules
within biofluids or tissues and gives information
about the physiological state of a cell tissue or biofluid
(EVAR Workgroup et al. 2011, Goulidelmos et al. 2020).
Different types of samples, such as tissues, urine, blood,
saliva, bronchial washes, CSF, pancreatic juice, and
other biofluids, can be utilized ( Spratlin et al. 2009).
Most of the studies reviewed here used serum, while
others used endometrial (ectopic or eutopic) tissue,
follicular fluid, urine, peritoneal fluid, or endometrial
fluid. The type of sample and the aim of the experiment
will determine the choice of instrumentation for data
analysis. The most commonly seen analytical techniques
in metabolomic studies are NMR and mass spectrometry
(MS). NMR requires minimal or no sample preparation
without additional fractionation techniques and offers
identification of compounds with identical masses and
those difficult to ionize (reviewed by Markley et al. 2017).
On the other hand, MS requires tissue preparation and
is coupled with additional separation techniques such
as liquid chromatography (LC) or gas chromatography
(GC) but provides more sensitivity in comparison to
NMR (reviewed by Klupczyńska et al. 2015 ). Despite
the differences between NMR and MS, both techniques
are ideal for data acquisition and it has been suggested
that their combined use may provide a more complete
picture of the metabolome (reviewed by Bingol &
Brüschwei 2015).
A metabolomic study generates a large amount of data,
and once analyzed, the data is subjected to pre-processing
and pre-treatment steps involving deconvolution,
alignment, scaling, and normalization ( Goodacre et al.
2007). This allows the results to be reliable and manageable.
Investigators commonly employ multivariate analysis
Methods
such as principal component analysis (PCA)
and partial least squares (PLS) to assess metabolomic
differences between groups ( Putri et al. 2013). Moreover,
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R372:2
the data is further analyzed by additional statistical
analysis, and metabolites can be identified by the use of
online databases such as the Human Metabolome Database
(HMDB) (Wishart et al. 2007, 2009). Once biomarkers are
identified, metabolic pathway analysis can be applied to
gain biological understanding and relate the potential
role of specific metabolites to disease pathophysiology
(Klupczyńska et al. 2015).
This technique has gained interest in the potential
identification of key metabolites within mechanistic
pathways that play a significant role in the pathophysiology
of endometriosis (reviewed by Yang et al. 2017). It has also
been considered as a potential diagnostic tool because of its
usefulness to monitor disease progression and to distinguish
between diseased and healthy subjects using a minimally
invasive approach (Nicholson & Lindon 2008). This review
article aims to provide insight about how endometriosis
affects the metabolome by reviewing studies that have
used this novel approach. We present potential biomarkers
of endometriosis that have been found in several studies,
discuss the limitations of metabolomic studies, and provide
perspectives for back-translational strategies that could be
used in animal models of endometriosis.
Methods
Information sources and search strategy
To search for articles, we used the electronic database
PubMed and Google Scholar. The search query included
the following keywords: (1) 'endometriosis' AND
'metabolomics', (2) 'endometriosis' AND 'sphingolipidomics'
and (3) 'endometriosis' AND 'lipidomics'.
Selection process and data collection
Inclusion criteria: articles must have been published from
January 1, 2012 to May 31, 2020, inclusive. The studies
were selected based on the research question: 'What is the
impact of endometriosis on the metabolome?'. Therefore,
articles must have used metabolomics and spectroscopy
techniques to identify changes in the metabolome and
determine significant metabolites in patients or animal
models with endometriosis compared to controls.
Exclusion criteria: articles were excluded if they were
published in a language other than English, were purely
methodological articles with no results or did not explicitly
identify the metabolites. Review articles were also excluded.
Data collection: the first reviewer (CNO) identified the
manuscripts in the databases and screened them, applying
the inclusion and exclusion criteria systematically. Once
the manuscript passed screening, the variables of interest
were collected in a tabular format.
Quality assessment
The second reviewer (ATR) used the Newcastle–Ottawa
Assessment Scale ( Wells et al. 2013 ) for measuring the
quality of cohort or case-control studies selected by the
first author. This scale assigns a maximum of five stars
in three different categories (Supplementary Table 1, see
section on supplementary materials given at the end of
this article). Since animal studies were also included,
the Animal Research: Reporting of In Vivo Experiments
guidelines 2.0 (ARRIVE) were utilized to measure the
quality of the included studies (Percie du Sert et al. 2020).
ARRIVE is a checklist of ten items for which we assigned
a value of one if a specific criterion was met and a zero
if it was not. In each case, the instructions provided by
each assessment scale were strictly followed and the total
number of points for each manuscript were reported in
the corresponding table.
Results
and discussion
The selection process of articles is summarized in Fig. 1. The
first search generated a total of 39 studies in PubMed, from
which 19 were selected to review. The other 20 studies were
eliminated because they were review articles, endometrial
cancer studies, studies regarding pregnancy outcome
and infertility, did not present specific identification of
metabolites, or assessed the performance of different high-
resolution techniques for endometriosis foci differentiation.
The second search resulted in one study. The third search
generated eight studies from which two studies were
selected, three overlapped with the first search, and three
were eliminated because they were article reviews, analysis
of an alternative treatment for endometriosis, and another
assessment of high-resolution techniques. Google Scholar
searches overlapped with studies already identified in
PubMed. A total of 19 human studies and 3 animal studies
were thus included in this review.
General findings of endometriosis-metabolomic
studies
Our main objective was to find articles demonstrating
the impact of endometriosis on the metabolome. The
articles selected are listed in Table 1 (human studies) and
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R382:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
Table 2 (animal models). Overall, the main focus of
most studies we reviewed was to determine significant
metabolites that distinguish endometriosis patients
from healthy controls with the aim of having a better
understanding of the pathophysiology. Also, some
articles proposed panels of metabolites that could be
useful for early detection of the disease. In general,
all studies demonstrated group separation between
endometriosis subjects and healthy controls. This was
seen across all experiments and demonstrates that
endometriosis undoubtedly affects the metabolome.
However, there are still some challenges and a lack of
consensus about what these differences in results could
mean, and what could be the most representative panel
of metabolites for the different stages of endometriosis.
To facilitate the presentation of the findings, we prepared
Tables 3, 4 , 5 and 6 to visualize statistically significant
metabolites identified throughout the manuscripts. We
include the nature of the molecule, levels in comparison
to healthy controls, sample source, association to stages
of endometriosis (if applicable), and references. The
following sections of this review discuss how altered
levels of amino acids, lipids, organic acids, and other
compounds reported in endometriosis samples may
be associated with disease pathophysiology. Since the
number of animal studies was limited, a summary of their
findings and discussion of how these relate to human
studies are presented separately.
Amino acids
Researchers were able to identify altered levels of amino
acids in tissue (eutopic endometrium) ( Dutta et al. 2018,
Li et al. 2018 a), serum ( Dutta et al. 2012 , 2018, Jana
et al. 2013 , Vicente-Muñoz et al. 2016 ), follicular fluid
(Marianna et al. 2017 , Castiglione Morell et al. 2019 ,
Karaer et al. 2019 ), urine ( Vicente-Muñoz et al. 2015 )
and endometrial fluid (Domínguez et al. 2017) of human
subjects with endometriosis. Statistically significant
amino acids are listed in Table 3. In comparison to other
types of compounds, there seems to be more discrepancy
between the levels of amino acids. For example, in two
experiments, Dutta et al. (2012, 2018) reported increased
serum levels of leucine in patients with EMT, while Jana
et al. (2013) demonstrated decreased levels. We noted
that Dutta et al. collected the samples in women during
their mid-secretory and secretory phases (part of the luteal
phase) whereas Jana et al. collected samples during the
follicular phase. The metabolome is a dynamic system
and is susceptible to environmental and genetic changes
(Johnson & Gonzalez 2012 ); thus, hormonal variations
throughout the menstrual cycle phases could have
implications on the levels of amino acids. For instance,
one of the studies that used urine samples from patients
with EMT determined metabolite differences between the
follicular phase and luteal phase, but also demonstrated
that regardless of the menstrual cycle phase, three
metabolites (taurine, unknown metabolite U2, and lysine)
Figure 1 Summary of the selection process of
articles selected to review.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R392:2
Table 1 Characteristics of endometriosis metabolomic studies with human subjects.
Reference
Age, mean
EM
stage Country of origin Analysis method Sample source
Type of
study
Quality
score
Adamyan et al. (2018) 15–45 III–IV Russia Direct-spray from tissue MS Tissue (eutopic and ectopic
endometrium)
POC 2
Castiglione et al. (2019) 38.6 III–IV Italy NMR Follicular fluid PI 6
Cordeiro et al. (2015) 32.30 III–IV Brazil ESI-MS/MS Follicular fluid CC 2
Domínguez et al. (2017) 35 NP Spain UHPLC-MS Endometrial fluid CC 4
Dutta et al. (2012) > 40 I–II India NMR Serum (blood) CC 7
Dutta et al. (2018) 29.37 I–IV India* and Bangladesh NMR Endometrial tissue (eutopic) and
serum (blood)
CC 7
Ghazi et al. (2016) 22–44 II–III Iran NMR Serum (blood) PC 5
Jana et al. (2013) 24–40 NP India NMR Serum (blood) CC 4
Karaer et al. (2019) 33.3 NP Turkey NMR Follicular fluid CC 6
Lee et al. (2014) 22–44 I–IV Singapore LC-MS/MS Serum (blood), peritoneal fluid
and endometrial tissue
PC 6
Letsiou et al. (2017) 32 I–IV Belgium HPLC-ESI-MS/MS; UPLC-MS/MS;
UPLC-ESI-Q-TOF
Serum (blood) PI 5
Li et al. (2018b) 29.71 I–II China UHPLC-ESI-HRMS Endometrial tissue (eutopic) CS 5
Li et al. (2018a) 29.69 I–II China UHPLC-ESI-HRMS Endometrial tissue (eutopic) CC 7
Marianna et al. (2017) 33.33 I–IV Italy NMR Follicular fluid CC 7
Sun et al. (2018) 36.1 NP China SWATH™ method on UPLC-TOF MS Follicular fluid CC 5
Vicente-Muñoz et al. (2016) 31.06 I–IV Spain NMR Serum (blood) PC 8
Vicente-Muñoz et al. (2015) 32.29 I–IV Spain NMR Urine PC 7
Vouk et al. (2012) 26–41 III–IV Slovenia ESI-MS/MS Serum (blood) CC 5
Vouk et al. (2016) 22–44 III–IV Slovenia ESI-MS/MS Peritoneal fluid CC 8
*Eastern region.CC, case-control; CS, cross-sectional; EM, endometriosis; NP, not provided; PC, prospective cohort; PI, pilot; POC, prospective observational cohort.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R402:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
were significantly altered (Vicente-Muñoz et al. 2015). In
addition, it has been recognized that one of the significant
challenges in metabolomics is the non-standardization
of methods and analysis of results ( Johnson & Gonzalez
2012, reviewed by Klupczyńska et al. 2015 ), which
could account for the variety of products found in the
experiments overall.
Nonetheless, there is substantial evidence that
demonstrates statistically significant differences between
EMT and healthy controls. These findings are essential to
explain some aspects of disease progression. The altered
levels of amino acids potentially explain tissue injury
repair mechanisms in endometriosis ( Leyendecker et al.
2009) and increased energy demand of proliferative
endometrial cells (Bahtiyar et al. 1998). Dutta et al. (2018)
state that 'the catabolic state induced in response to
injury in endometriosis leads to increased breakdown of
endogenous protein and release of free amino acids in
circulation.at' This statement is in agreement with their
study, where they found an inverse relationship of amino
acid levels between tissue and serum ( Table 3 ) ( Dutta
et al. 2018). The many similarities of endometrial cells to
neoplastic cells, such as high proliferation, angiogenesis,
anti-apoptosis, and cell invasion have been extensively
recognized in the literature ( Varma et al. 2004, Anglesio
et al. 2017 ). All of these characteristics require a high
catabolic state from which amino acids could be serving
as an important supply since they can be interconverted
to the TCA cycle intermediates and support energy
requirements for fast-growing endometrial cells ( Jana
et al. 2013, Li et al. 2018a). In addition, several authors
conducted pathway analysis on their data, and their
Results
suggest an imbalance in the metabolism of several
amino acids (Dutta et al. 2012, Jana et al. 2013, Marianna
et al. 2017).
Lipids
Characteristic lipid profiles have been identified in tissue
(Adamyan et al. 2018 , Li et al. 2018 b), serum ( Vouk
2012), follicular fluid ( Cordeiro et al. 2015 , Marianna
et al. 2017 , Sun et al. 2018 ), peritoneal fluid ( Vouk
et al. 2016 ) and endometrial fluid of human subjects
with EMT. Statistically significant lipids are illustrated
in Table 4 . Li et al. (2018 b) identified increased levels
of lysophosphatidylethanolamine (LysoPE), omega-3
arachidonic acid, and phosphatidic acid (PA), whereas
decreased levels of phosphatidylcholine (PC) and
phosphatidylserine (PS) were observed in eutopic
endometrium. The function of some of these lipids is
in parallel with some known aspects of endometriosis
pathophysiology. For example, PA is a phospholipid known
for its diverse involvement in cellular processes such as
'cell proliferation, cell survival, cell transformation, tumor
progression, and differentiation' (Wang et al. 2006, O’Neil
et al. 2009). As mentioned earlier, these functions are seen
in cancer cells as well as endometrial cells. We could infer
that PA may be a chief mediator for cell transformation,
survival, and proliferation of endometriotic cells outside
the uterine cavity. In addition, PA stimulates oxidative
burst leading to the production of reactive oxygen species
(ROS) (Wang et al. 2006). This correlates with Jana et al.
(2013) and others where they reported lower expression
Table 2 Characteristics of endometriosis metabolomic studies with animal models.
Reference
Animal model Country Main findings
Quality
score
Atkins et al.
(2019)
Non-human primate
(NHP) model:
Spontaneous
endometriosis in
Macaca fascicularis
and M. mulatta
USA Endometriotic lesions and endometrium from NHPs with endometriosis
showed decreased mitochondrial respiration in comparison to
healthy controls.
8
Significant metabolites identified in endometriosis lesions and
endometrium from NHPs with endometriosis include decreased
carnitine, creatine phosphate, NADH, malic acid, FAD and tryptophan.
Pathway analysis of significant metabolites were mapped to tryptophan
and nitrogen metabolism.
Dutta et al.
(2016)
Mouse model:
homologous
C57BL/6J using
syngeneic donor
India Endometriosis samples evidenced dysregulation of lipids such as
phosphatidylcholines, sphingomyelins, phosphatidylethanolamines
and triglycerides.
5
Mice with induced endometriosis also demonstrated altered ratio of
phosphatidylcholine/phosphatidylethanolamine.
Ni et al.
(2020)
Mouse model:
homologous
C57BL/6J using
syngeneic donor
China Endometriosis group demonstrated decreased diversity and richness of
bacteria in comparison to the control.
6
Significant metabolites that contributed to differences in the fecal
metabolome between groups include ALA, CDCA, UDCA and
12,13-EOTrE.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R412:2
of antioxidative enzymes such as superoxide dismutase
(SOD) and catalase and thus, higher production of ROS
in the serum of women with EMT ( Murphy et al. 1998,
Shanti et al. 1999).
Some authors reported altered levels of
phosphocholine and phosphatidylcholine in tissue
(Adamyan et al. 2018 , Li et al. 2018 b), follicular fluid
(Cordeiro et al. 2015 , Marianna et al. 2017 ), and
peritoneal fluid ( Vouk et al. 2016). These terms are used
interchangeably, but in reality, phosphocholine is an
intermediate during the synthesis of phosphatidylcholine,
the most abundant phospholipid in mammalian cells. PC
has been recognized as a biomarker of cell proliferation in
malignant tumors, including breast cancer ( Eliyahu et al.
2007). Interestingly, PC is a source for the production
of sphingomyelins (SMs) and prostaglandins. SMs have
been identified in tissue ( Adamyan et al. 2018), follicular
fluid (Vouk et al. 2012) and peritoneal fluid ( Vouk et al.
2016) and may be involved in the process of denervation
and subsequent re-innervation in endometriosis and cell
survival (Vouk et al. 2012, Cordeiro et al. 2015). Overall,
the functions of most lipids reported by researchers are
related to endometrial cell pathophysiology, but as in
the case of amino acids, the methodology, statistics, and
environmental factors from each experiment should
be considered. Nonetheless, lipidomics demonstrates
excellent potential for the explanation of mechanistic
pathways involved in endometriosis.
Organic acids
Organic acids are illustrated in Table 5 . Statistically
significant changes between controls and women with
EMT were identified in tissue ( Dutta et al. 2018, Li et al.
2018a), serum (Dutta et al. 2012, Jana et al. 2013), follicular
fluid (Marianna et al. 2017, Castiglione Morell et al. 2019,
Karaer et al. 2019) and urine (Vicente-Muñoz et al. 2015).
We have already discussed how endometriosis resembles
cancer cells and how altered levels of amino acids could
explain the high energy demand of endometrial cells. In
this context, several authors have reported increased levels
of organic acids supporting the idea of increased energy
metabolism in endometriosis (Dutta et al. 2012, Jana et al.
2013, Marianna et al. 2017, Karaer et al. 2019). Organic
acids such as pyruvate, succinate, and citrate are important
intermediates of the TCA cycle, and some have been
reported to be elevated in serum (Dutta et al. 2012, Jana et al.
2013) and follicular fluid ( Castiglione Morell et al. 2019,
Karaer et al. 2019). This could indicate an upregulation of
the TCA cycle for the generation of ATP to supply the rapid
proliferation of endometrial cells (Jana et al. 2013). On the
Table 3 Summary of amino acids identified as potential biomarkers from human subjects with endometriosis.
Amino acids Tissue† Serum Follicular fluid Urine Endometrial fluid
Alanine ↓Dutta et al. (2018)* ↑Dutta et al. (2018)*, (2012)*
↓Jana et al. (2013)
↓Marianna et al. (2017)*#
Arginine ↑Dutta et al. (2018)*, Li et al. (2018a)* ↓Dutta et al. (2018)*, (2012)*, Jana et al. (2013)
↑Vicente-Muñoz et al. (2016)
Asparagine ↑Li et al. (2018a)* ↓Jana et al. (2013)
Aspartate ↓Marianna et al. (2017)*#
Cysteine ↑Domínguez
et al. (2017)
Isoleucine ↓Dutta et al. (2012)*, Jana et al. (2013)
Leucine ↓Dutta et al. (2018)*
↑Li et al. (2018a)*
↑Dutta et al. (2018)*, (2012)*
↓Jana et al. (2013)
↓Marianna et al. (2017)*#
Lysine ↓Dutta et al. (2018)*
↑Li et al. (2018a)*
↑Dutta et al. (2018), (2012)*, Vicente-Muñoz
et al. (2016), Jana et al. (2013)
↓Marianna et al. (2017)*# ↓Vicente-Muñoz
et al. (2015)
Phenylalanine ↓Dutta et al. (2018)* ↑Dutta et al. (2018)
Proline ↓Dutta et al. (2018)* ↓Dutta et al. (2018)* ↓Marianna et al. (2017)*#
Threonine ↑Dutta et al. (2012)*
Tyrosine ↑Li et al. (2018)*
Valine
↑Dutta et al. (2012)*, Vicente-Muñoz
et al. (2016)
↑Karaer et al. (2019)
↓Marianna et al. (2017)*#,
Castiglione et al. (2019)
↑Vicente-Muñoz
et al. (2015)
†Eutopic endometrium; *I–II (Mild-minimal) stages of EMT; #III–IV (advanced) stages of EMT; ↑, significantly increased in comparison to controls; ↓, significantly decreased in comparison to controls.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R422:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
other hand, researchers have found lower levels of glucose
(Dutta et al. 2012, Jana et al. 2013, Marianna et al. 2017)
and higher levels of lactate ( Dutta et al. 2012, Jana et al.
2013, Marianna et al. 2017, Castiglione Morell et al. 2019,
Karaer et al. 2019) in subjects with EMT which indicates
high anaerobic metabolism, a phenomenon known as
Table 4 Summary of lipids identified as potential biomarkers from human subjects with endometriosis.
Lipids Tissue† Serum Follicular fluid Peritoneal fluid Endometrial fluid
Choline ↓Marianna et al.
(2017)*#
Ceramides ↓Domínguez
et al. (2017)
Lysophosphatidylethanolanime ↑Li et al. (2018a)*
Lysophosphocholine ↑Sun et al. (2018)
Omega-3 arachidonic acid ↑Li et al. (2018a)*
Phosphatidic acid ↑Li et al. (2018b)*
Phosphatidylcholines ↓Li et al. (2018b)*
↑Adamyan
et al. (2018)‡
↑Cordeiro et al.
(2015)#
↓Vouk et al.
(2016)
Phosphocholine ↓Marianna
et al. (2017)*#
Phytosphingosine ↓Sun et al. (2018)
Plasmanylcholine, plasmenycholines ↑Vouk et al.
(2012)
Phosphatidylethanolamine ↑Adamyan
et al. (2018)‡
Phosphatidylserine ↓Li et al. (2018b)*
Sphingomyelins ↑Adamyan et al.
(2018)‡
↑Vouk et al.
(2012)
↓Vouk et al.
(2016)
↓Domínguez
et al. (2017)
Sphingolipids ↑Cordeiro et al.
(2015)#
Glucosylceramide ↑Lee et al.
(2014)#
↑Lee et al.
(2014)#
Unsaturated lipids ↑Castiglione et al.
(2019)
†Ectopic or eutopic endometrium; *I–II (mild-minimal) stages of EMT; #III–IV (advanced) stages of EMT; ‡Particularly elevated in endometriotic lesions
(ectopic) compared to healthy endometrium (eutopic) in patients with endometriosis; ↑, significantly increased in comparison to controls; ↓, significantly
decreased in comparison to controls.
Table 5 Summary of organic acids identified as potential biomarkers from human subjects with endometriosis.
Organic acids Tissue† Serum Follicular fluid Urine
2-hydroxybutyrate ↑Dutta et al. (2012)*,
Jana et al. (2013)
2-hydroxyisovalerate ↑Vicente-Muñoz et al. (2015)
3-hydroxybutyrate ↑Dutta et al. (2012)*
β-hydroxybutyrate ↓Castiglione et al. (2019)
Acetate ↓Castiglione et al. (2019)
Adipic acid ↑Jana et al. (2013)
Citric acid ↑Jana et al. (2013) ↓Castiglione et al. (2019)
Formate ↓Dutta et al. (2018)#
Lactate ↑Dutta et al. (2012)*,
Jana et al. (2013)
↑Karaer et al. (2019), Marianna
et al. (2017)*#, Castiglione
et al. (2019)
Pyruvate ↑Jana et al. (2013) ↑Karaer et al. (2019)
Succinate ↑Dutta et al. (2012)*,
Jana et al. (2013)
Taurine ↑Dutta et al. (2018)# ↑Vicente-Muñoz et al. (2015)
Uric acid ↓Li et al. (2018a)*
†Ectopic or eutopic endometrium; *I–II (mild-minimal) stages of EMT; #III–IV (advanced) stages of EMT; ↑, significantly increased in comparison to controls;
↓, significantly decreased in comparison to controls.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R432:2
the 'Warburg effect' in cancer cells ( Young et al. 2014 ).
Moreover, Jana et al. (2013) suggest that impairments
in glucose metabolism and mitochondrial respiration
could be a potential source of ROS. As previously said,
antioxidative enzymes were downregulated in patients
with endometriosis ( Jana et al. 2013 ). Specifically,
insufficient levels of reduced glutathione (GSH) lead to
opthalmate synthesis from which 2-hydroxybutyrate is a
byproduct (Fong et al. 2011, Dutta et al. 2012, Jana et al.
2013). This byproduct was found to be elevated in the
serum of patients (Dutta et al. 2012, Jana et al. 2013), which
correlates ROS to the process of chronic inflammation and
tissue damage in endometriosis.
Other compounds
Compounds such as hormones, sugars, amino acid
derivatives, nucleosides, purine derivatives or choline-
containing compounds are included in Table 6 . These
were identified in tissue (Dutta et al. 2018, Li et al. 2018a),
serum (Dutta et al. 2012, Jana et al. 2013, Ghazi et al. 2016,
Letsiou et al. 2017, Vicente-Muñoz et al. 2016), follicular
fluid ( Marianna et al. 2017 , Karaer et al. 2019 ), urine
(Vicente-Muñoz et al. 2015 ) and peritoneal fluid ( Vouk
et al. 2016 ). A metabolite of interest is taurine, which
has been associated to high proliferation and cell density
(Jong et al. 2012, Vicente-Muñoz et al. 2015, Dutta et al.
2018). In addition, high concentrations have been found
in some tumors ( Chan et al. 2009, Srivastava et al. 2010,
Taherizadeh et al. 2017), which follows the analogy of EMT
with neoplasms ( Vicente-Muñoz et al. 2015, Dutta et al.
2018). On the other hand, taurine acts as an antioxidant
and has been found to be elevated in sites with high
oxidative stress (reviewed by Marcinkiewicz & Kontny
2014). We have already mentioned that endometriosis
is characterized by high concentrations of ROS, thus
elevated levels of taurine may be playing a role in reducing
high oxidative stress conditions (Jeon et al. 2009, Oliveira
et al. 2010). In the same manner, Ghazi et al. (2016) found
elevated levels of 2-methoxyestradiol, a compound that
has gained interest for the treatment of cancer since it
has been demonstrated to inhibit angiogenesis and cell
proliferation (reviewed by Pribluda et al. 2000). As in the
case of taurine, elevated levels of 2-methoxyestradiol
could be serving a protecting role to prevent angiogenesis
and proliferation of endometrial cells.
One of the enzymes that participates in purine salvage
reactions is purine nucleoside phosphorylase (PNP). It has
been demonstrated that PNP is teratogenic or lethal to
the embryo when it is pharmacologically inhibited (Witte
et al. 1991). Li et al. (2018a) suggest an impairment of PNP
due to the presence of high concentrations of guanosine,
hypoxanthine, inosine, and xanthosine in combination
with low levels of uric acid in eutopic endometrium
of patients with EMT. Additionally, Kao et al. (2003)
demonstrated low expression of PNP in patients with
EMT, leading to the conclusion that purine salvage is
impaired in EMT and may cause implantation failure.
The latter statement could explain the altered levels of
purine metabolites reported by Li et al. 2018a) and may
relate to the high prevalence of infertility seen in women
with endometriosis. Another compound contributing
to differences between EMT and healthy controls is
glycerophosphocholine or glycerophosphatidylcholine
(GPC) (Dutta et al. 2012, Jana et al. 2013, Vicente-Muñoz
et al. 2015, 2016). GPC is the product of phospholipase
A1 and A2 (PLA2), an enzyme found to be increased in
ectopic endometrium from EMT patients (Sano et al. 1994).
Interestingly, secretory PLA2 has been demonstrated as
a stimulator of vascular endothelial migration, which
suggests its potential role in angiogenesis ( Rizzo et al.
2000), a process characteristic of endometriotic implants.
Findings in animal models
We noticed that studies using animal models of
endometriosis and metabolomics are limited. From
the search engine, we found only three studies, a
macaque nonhuman primate model with spontaneous
endometriosis and two homologous mouse models where
minced endometrial tissue was injected from syngeneic
donor mice ( Table 2 ). The nonhuman primate model
(Macaca fascicularis and M. mulatta) by Atkins et al. (2019)
demonstrated decreased mitochondrial respiration and
tissue metabolism in endometrium and endometriosis
tissue in comparison to controls. They suggested two
possible explanations: mitochondrial damage by ROS
from hemoglobin oxidation, inflammatory cells, and
electron transport chain or a shift to anaerobic glycolysis
to meet the increased energy demands of endometriosis
tissue. The second explanation must be supported by
further investigation since an increase in lactic acid was
not identified. Additionally, they reported decreased
levels of tryptophan and metabolites involved in its
biosynthesis. This amino acid has not been identified in
other studies we have mentioned but might be important
since it is thought that its catabolism may be involved in
the immune tolerance of endometriosis implants ( Urata
et al. 2014).
Atkins et al. (2019) also identified significantly
decreased levels of carnitine, which was also reported
in peritoneal fluid ( Vouk et al. 2016 ) of women with
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R442:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
Table 6 Summary of compounds identified as potential biomarkers from human subjects with endometriosis.
Compounds Tissue† Serum Follicular fluid Urine
Peritoneal
fluid Endometrial fluid
2-methoxyestradiol, 2-methoxyestrone,
androstenedione, cholesterol, DHEA
↑Ghazi et al. (2016)⁑
Acylcarnitine ↓Vouk et al.
(2016)
↑Domínguez
et al. (2017)
Carnitine ↓Vouk et al.
(2016)
Creatine ↓Jana et al. (2013)
Creatinine ↓Vicente-Muñoz et al.
(2016)
↑Vicente-Muñoz
et al. (2015)
Fucose ↑Vicente-Muñoz et al.
(2016)
Glucose ↓Dutta et al. (2012)*,
Jana et al. (2013)
↑Karaer et al.
(2019),
Castiglione
et al. (2019)
↓Marianna et al.
(2017)*#
Glycerophosphatidylcholine ↑Dutta et al. (2012)*
Glycerophosphocholine ↑Vicente-Muñoz et al.
(2016), Jana et al.
(2013)
↑Vicente-Muñoz
et al. (2015)
Guanidino-succinate ↑Vicente-Muñoz
et al. (2015)
Guanosine, hypoxanthine, inosine, xanthosine ↑Li et al. (2018a)*
Long chain acylcarnitine ↑Letsiou et al. (2017)‡
Myo-inositol ↑Dutta et al.
(2018)#
N1-methyl-4-pyridone-5-carboxamide (4-Py) ↑Vicente-Muñoz
et al. (2015)
Primary bile acids ↓Ghazi et al. (2016)⁑
Taurine ↑Dutta et al.
(2018)#
↑Vicente-Muñoz
et al. (2015)
Trimethylamine-N-oxide ↓Letsiou et al. (2017)‡
†Ectopic or eutopic endometrium; *I–II (mild-minimal) stages of EMT; ‡III stage of EMT; ⁑II–III stage of EMT; #III–IV (advanced) stages of EMT; ↑, significantly increased in comparison to controls; ↓,
significantly decreased in comparison to controls.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R452:2
endometriosis (Table 6). L-carnitine (LC) is thought to be
beneficial for infertility management (Dunning & Robker
2012) through its antioxidative effects ( Dokmeci 2005).
For instance, in a study of patients with polycystic ovarian
syndrome (PCOS), LC supplementation improved total
antioxidant capacity (TAC), decreased lipid peroxidation,
and enhanced general and mental health parameters
(Jamilian et al. 2017). Such parameters have been found
to be affected in endometriosis patients, suggesting that
supplementation of LC could also be beneficial for the
treatment of endometriosis. However, as reviewed by
Agarwal et al. (2018), the effect of LC on endometriosis is
still not well understood since contradictory results have
been found. Despite this, altered carnitine levels and its
function should be further investigated to understand the
relationship between endometriosis, high oxidative stress,
and infertility.
The homologous mouse model using female c57BL/6J
mice by Dutta et al. (2016) demonstrated dysregulation of
lipids such as phosphatidylcholines, sphingomyelins, and
phosphatidylethanolamines in the serum of mice with the
induced endometriosis. Specifically, sphingomyelin may
be involved in cell cycle progression and proliferation
since a study with rats demonstrated that inhibition
of SM synthesis prevented G1 to S phase transition in
uterine epithelial cells ( Cerbón et al. 2018 ). Moreover,
sphingolipid metabolism has been reported to be altered
in women with endometriosis, and sphingomyelin may be
a source of ceramide for the synthesis of glucosylceramide
(GlcCer) ( Lee et al. 2014 ). GlcCer has been reported
to increase in serum and peritoneal fluid of women
with endometriosis and is thought to be an important
mediator of enhanced cell proliferation ( Lee et al. 2014).
As previously mentioned, PC is used as a biomarker
for cell proliferation in cancer cells and is a source for
sphingomyelin and prostaglandin synthesis.
The other study using the homologous c57BL/6J
mouse model is particularly distinctive from the rest of
the studies reviewed since it correlates fecal metabolomics
and gut microbiota in mice with endometriosis. Ni
et al. (2020) reported decreased diversity and richness
of bacteria in an endometriosis group and significant
differences in species composition between the disease
group and control. In terms of metabolites, alpha-linoleic
acid (ALA), chenodeoxycholic (CDCA), ursodeoxycholic
acid (UDCA) and 12,13s-epoxy-9z,11,15z-octadecatrienoic
acid (12,13-EOTrE) contributed most to differences in
fecal metabolome. Ni et al. (2020) suggest that CDCA,
UDCA, and ALA have a protective role in the intestinal
wall because of their anti-inflammatory effects ( Paula
et al. 2018, Ko et al. 2019, Song et al. 2019), while 12,13-
EOTrE may be related to inflammation and serve as
a potential biomarker of endometriosis. Despite such
findings, further studies are necessary to understand the
correlation between endometriosis and these compounds
(Ni et al. 2020).
Limitations
of the studies
There is no doubt that endometriosis causes changes in
the metabolome, but, as mentioned earlier, metabolomic
studies may present challenges in the methodology
and interpretation of results and the possibility of bias
in metabolite identification. One of the limitations
to interpretation as to the clinical significance of any
identified metabolites assumes, in part, that all of the
studies are comparable in study design. The majority of
the studies included in this review were in the upper half
of quality scoring for the Newcastle–Ottawa assessment
scale suggesting that most studies had comparable criteria
for study design and outcomes, regardless, inclusion
of some of the studies based on this assumption might
contribute to contradictory results. Further, every
study uses a different approach for sample extraction,
which can influence the type of metabolites identified,
adding a source of variability from the beginning. Also,
different studies employed various types of spectroscopy
(NMR or MS) and other chromatographic techniques,
all of which can factor in to influence which specific
compounds are ultimately identified. Equally important,
investigators used different statistical analytical programs
for result interpretation. All of these aspects can affect
the outcome of the experiments and thus limit the
application of metabolomics to a clinical setting. Most
studies propose the use of metabolomics as a tool for early
diagnosis of endometriosis; therefore, 'establishment
of commonly accepted standardized protocols in the
range of methodology, data mining and data reporting
is necessary' ( Klupczyńska et al. 2015 ). Nonetheless,
metabolomics may be an excellent candidate for the
diagnosis of endometriosis since metabolites can be
readily measured on semi-invasive samples such as blood
and urine. This could resolve one of the major challenges
with endometriosis by avoiding the use of laparoscopic
surgery for diagnosis.
Another common limitation in the studies we
reviewed is the small sample size and the use of invasive
samples such as tissue and follicular fluid. The small
sample size is to be expected since participants were
human subjects and due to exclusion and inclusion
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R462:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
criteria. The use of tissue involves the use of a biopsy,
which is less invasive than laparoscopic surgery but still
more invasive than other types of samples employed.
Moreover, the acquisition of follicular fluid involves the
use of in vitro fertilization (IVF), which also represents an
invasive measure. Additionally, IVF treatment requires
hormonal supplementation, adding a confounding factor
that may interfere with metabolite composition.
Other confounding factors noted throughout the
studies included here were differences in menstrual cycle
phases, age, BMI, nutrition, medications, diseases, and
lifestyle. Earlier, we pointed out the discrepancy between
amino acid levels in samples and explained that a factor
contributing to these differences might be related to the
menstrual cycle phase. For that reason, there should be
a consensus regarding in which phase samples should
be taken. Another option is to collect samples with
a balanced representation of menstrual cycle phases
for comparative purposes. Most studies included in
their inclusion criteria were age, BMI, and hormonal
medication, but some authors did not take these factors
into consideration. Lastly, lifestyle was almost never
considered in the majority of studies, which also acts as
a confounding factor because nutrition, exercise, stress,
or environmental factors, in general, could also have
an impact on the metabolome. Certainly, lifestyle is
difficult or even impossible to control and may represent
one of the most challenging confounding factors in
human studies.
Further investigation is needed
We have summarized some of the most important
metabolites identified through several metabolomic
studies and their association with the pathophysiology
of endometriosis. As mentioned earlier, there are factors
and limitations that must be considered. However, a
metabolomic-based approach seems to be promising
since many metabolites relate to some of the cellular
processes that have been studied in endometriosis, such
as endometrial cell proliferation, cell survival, and high
oxidative stress. We found that metabolic studies in animal
models or endometriosis are very limited. Nonetheless,
the three animal studies we reviewed are in parallel
with human studies. Dutta et al. (2016) and Atkins et al.
(2019) have demonstrated significant differences between
endometriosis and healthy controls and have reported
important metabolites implicated in cell proliferation,
cell survival, oxidative stress, altered mitochondrial
function, high energy demand, and lipid dysregulation.
On the other hand, Ni et al. (2020) provided insight into
understanding gastrointestinal symptoms commonly
experienced by women with endometriosis. The study
of the fecal metabolome in subjects with endometriosis
is of relevance because it has been documented that
women with endometriosis experience more abdominal
pain, constipation, the urgency to defecate, bloating, and
flatulence in comparison to healthy patients ( Ek et al.
2015).
Despite the fact that studies with animals were limited,
we suggest that further investigations in animal models of
endometriosis could provide valuable information since
many confounding factors such as diet, exercise, stress
levels, environmental factors, and age can be controlled
and standardized. Also, an animal model could allow for
increased sampling, which is one of the limitations in
research with human studies. Even though rodents do not
have a menstrual cycle phase identical to humans, these
models exhibit similar signs and symptoms experienced
by human subjects, such as reduced fertility and increased
vaginal hyperalgesia (reviewed by Grümmer 2006 ). In
addition, as reviewed recently by Appleyard et al. (2020),
endometriotic lesions of the rat auto-transplantation
model show similar histology, global gene expression
profile, and increased cellular and molecular mechanisms
to those of human disease, making this an ideal study
subject to identify metabolomic changes caused by
endometriosis. Therefore, we propose, that in addition
to more clinical studies with larger sample sizes and
tighter restrictions, future investigations with animal
models are also warranted. This approach could eliminate
some of the limitations presented in human studies
allowing investigation of more samples within the same
experiment. For example, from each animal, we can
sample various tissues and fluids (e.g. endometrial tissue,
peritoneal fluid, endometrial fluid, blood, urine, feces)
and investigate the relationship between the levels of
metabolites within each sample. Also, we can study the
effect of environmental factors such as diet and stressors
on the metabolome in animal models of endometriosis.
This way, we can investigate how endometriosis and
other environmental factors affect the metabolome
globally within an individual organism, which can then
be extrapolated to human studies and provide insight
into the potential use of metabolomics in personalized
medicine.
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R472:2
Conclusion
Researchers have recently been using a metabolomics-
based approach to demonstrate differences between
endometriosis patients and healthy controls. Statistically
significant metabolites such as amino acids, lipids, organic
acids, and other biological compounds have contributed
to group separation. Metabolomics has caught the
interest of researchers as a new tool to understand the
pathophysiology of diseases with unknown etiology.
However, several limitations and confounding factors
persist within the studies. In addition to larger clinical
studies with tighter restrictions, we suggest that more
animal studies are needed to overcome some of the
identified limitations presented here and pinpoint the
metabolites with the highest predictive likelihood for
diagnosis and prognosis of endometriosis.
Supplementary materials
This is linked to the online version of the paper at https://doi.org/10.1530/
REP-20-0047.
Declaration of interest
C B A and A T R hold a US patent for repurposing the corticotrophin-
releasing hormone inhibitor antalarmin to treat endometriosis. C N O
declares no conflict of interest.
Funding
This report was supported by R15AT009915 from NIH-NCCIH and the
Ponce Research Institute.
Author contribution statement
C B A conceived and supervised the study. C N O collected the data and
wrote the first draft of the manuscript. A T R analyzed included papers and
edited the final version of this manuscript.
Acknowledgements
C N O likes to acknowledge her laboratory partners for their support
and professional discussions and a special thanks to the Ponce Research
Institute for the opportunity to participate in the 2020 MD Summer
Research Program.
References
Adamyan LV, Starodubtseva N, Borisova A, Stepanian AA,
Chagovets V, Salimova D, Wang Z, Kononikhin A, Popov I,
Bugrova A, et al. 2018 Direct mass spectrometry differentiation of
ectopic and eutopic endometrium in patients with endometriosis.
Journal of Minimally Invasive Gynecology 25 426–433. (https://doi.
org/10.1016/j.jmig.2017.08.658)
Agarwal A, Sengupta P & Durairajanayagam D 2018 Role of
L-carnitine in female infertility. Reproductive Biology and Endocrinology
16 5. (https://doi.org/10.1186/s12958-018-0323-4)
American Society for Reproductive Medicine 1997 Revised American
Society for Reproductive Medicine classification of endometriosis:
1996. Fertility and Sterility 67 817–821. (https://doi.org/10.1016/
s0015-0282(97)81391-x)
Anglesio MS, Papadopoulos N, Ayhan A, Nazeran TM, Noë M,
Horlings HM, Lum A, Jones S, Senz J, Seckin T, et al. 2017
Cancer-associated mutations in endometriosis without cancer. New
England Journal of Medicine 376 1835–1848. (https://doi.org/10.1056/
NEJMoa1614814)
Appleyard CB, Cruz ML, Hernández S, Thompson KJ, Bayona M
& Flores I 2015 Stress management affects outcomes in the
pathophysiology of an endometriosis model. Reproductive Sciences 22
431–441. (https://doi.org/10.1177/1933719114542022)
Appleyard CB, Flores I & Torres-Reverón A 2020 The link
between stress and endometriosis: from animal models to the
clinical scenario. Reproductive Sciences 27 1675–1686. (https://doi.
org/10.1007/s43032-020-00205-7)
Atkins HM, Bharadwaj MS, O’Brien Cox A, Furdui CM, Appt SE
& Caudell DL 2019 Endometrium and endometriosis tissue
mitochondrial energy metabolism in a nonhuman primate model.
Reproductive Biology and Endocrinology 17 70. (https://doi.org/10.1186/
s12958-019-0513-8)
Bahtiyar MO, Seli E, Oral E, Senturk LM, Zreik TG & Arici A
1998 Follicular fluid of women with endometriosis stimulates the
proliferation of endometrial stromal cells. Human Reproduction 13
3492–3495. (https://doi.org/10.1093/humrep/13.12.3492)
Bingol K & Brüschweiler R 2015 Two elephants in the room:
new hybrid nuclear magnetic resonance and mass spectrometry
approaches for metabolomics. Current Opinion in Clinical Nutrition
and Metabolic Care 18 471–477. (https://doi.org/10.1097/
MCO.0000000000000206)
Burney RO & Giudice LC 2012 Pathogenesis and pathophysiology
of endometriosis. Fertility and Sterility 98 511–519. (https://doi.
org/10.1016/j.fertnstert.2012.06.029)
Castiglione Morell MA, Iuliano A, Schettini SCA, Petruzzi D,
Ferri A, Colucci P, Viggiani L, Cuviello F & Ostuni A 2019
NMR metabolic profiling of follicular fluid for investigating the
different causes of female infertility: a pilot study. Metabolomics 15
19. (https://doi.org/10.1007/s11306-019-1481-x)
Cerbón J, Baranda-Avila N, Falcón-Muñoz A, Camacho-Arroyo I
& Cerbón M 2018 Sphingolipid synthesis and role in uterine
epithelia proliferation. Reproduction 156 173–183. (https://doi.
org/10.1530/REP-17-0667)
Chan EC, Koh PK, Mal M, Cheah PY, Eu KW, Backshall A,
Cavill R, Nicholson JK & Keun HC 2009 Metabolic profiling of
human colorectal cancer using high-resolution magic angle spinning
nuclear magnetic resonance (HR-MAS NMR) spectroscopy and gas
chromatography mass spectrometry (GC/MS). Journal of Proteome
Research 8 352–361. (https://doi.org/10.1021/pr8006232)
Cordeiro FB, Cataldi TR, Perkel KJ, do Vale Teixeira da Costa L,
Rochetti RC, Stevanato J, Eberlin MN, Zylbersztejn DS,
Cedenho AP & Turco EG 2015 Lipidomics analysis of
follicular fluid by ESI-MS reveals potential biomarkers for ovarian
endometriosis. Journal of Assisted Reproduction and Genetics 32
1817–1825. (https://doi.org/10.1007/s10815-015-0592-1)
Cuevas M, Flores I, Thompson KJ, Ramos-Ortolaza DL,
Torres-Reverón A & Appleyard CB 2012 Stress exacerbates
endometriosis manifestations and inflammatory parameters in
an animal model. Reproductive Sciences 19 851–862. (https://doi.
org/10.1177/1933719112438443)
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R482:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
Dokmeci D 2005 Oxidative stress, male infertility and the role of
carnitines. Folia Medica 47 26–30.
Domínguez F, Ferrando M, Díaz-Gimeno P, Quintana F,
Fernandez G, Castells I & Simón C 2017 Lipidomic profiling of
endometrial fluid in women with ovarian endometriosis. Biology of
Reproduction 96 772–779. (https://doi.org/10.1093/biolre/iox014)
Dunning KR & Robker RL 2012 Promoting lipid utilization with
l-carnitine to improve oocyte quality. Animal Reproduction Science 134
69–75. (https://doi.org/10.1016/j.anireprosci.2012.08.013)
Dutta M, Josh M, Srivastava S, Lodh I, Chakravarty B &
Chaudhury K 2012 A metabonomics approach as a means
for identification of potential biomarkers for early diagnosis of
endometriosis. Molecular bioSystems 8 3281–3287. (https://doi.
org/10.1039/c2mb25353d)
Dutta M, Anitha M, Smith PB, Chiaro CR, Maan M,
Chaudhury K & Patterson AD 2016 Metabolomics reveals
altered lipid metabolism in a mouse model of endometriosis. Journal
of Proteome Research 15 2626–2633. (https://doi.org/10.1021/acs.
jproteome.6b00197)
Dutta M, Singh B, Joshi M, Das D, Subramani E, Maan M,
Jana SK, Das S, Dasgupta S, Ray CD, et al. 2018 Metabolomics
reveals perturbations in endometrium and serum of minimal
and mild endometriosis. Scientific Reports 8 6466. (https://doi.
org/10.1038/s41598-018-23954-7)
Ek M, Roth B, Ekström P, Valentin L, Bengtsson M & Ohlsson B
2015 Gastrointestinal symptoms among endometriosis patients:
a case-cohort study. BMC Women’s Health 15 59. (https://doi.
org/10.1186/s12905-015-0213-2)
Eliyahu G, Kreizman T & Degani H 2007 Phosphocholine as a
biomarker of breast cancer: molecular and biochemical studies.
International Journal of Cancer 120 1721–1730. (https://doi.
org/10.1002/ijc.22293)
Evian Annual Reproduction (EVAR) Workshop Group 2010, Fauser BC,
Diedrich K, Bouchard P, Domínguez F, Matzuk M,
Franks S, Hamamah S, Simón C, Devroey P, et al.
2011Contemporary genetic technologies and female reproduction.
Human Reproduction Update 17 829–847. (https://doi.org/10.1093/
humupd/dmr033)
Fong MY, McDunn J & Kakar SS 2011 Identification of metabolites in
the normal ovary and their transformation in primary and metastatic
ovarian cancer. PLoS ONE 6 e19963. (https://doi.org/10.1371/journal.
pone.0019963)
Ghazi N, Arjmand M, Akbari Z, Mellat AO, Saheb-Kashaf H
& Zamani Z 2016 1H NMR-based metabolomics approaches as
non-invasive tools for diagnosis of endometriosis. International
Journal of Reproductive BioMedicine 14 1–8. (https://doi.org/10.29252/
ijrm.14.1.1)
Goodacre R, Broadhurst D, Smilde AK, Kristal BS, Baker JD,
Beger R, Bessant C, Connor S, Capuani G, Craig A, et al.
2007 Proposed minimum reporting standards for data analysis in
metabolomics. Metabolomics 3 231–241. (https://doi.org/10.1007/
s11306-007-0081-3)
Goulielmos GN, Matalliotakis M, Matalliotakis C, Eliopoulos E,
Matalliotakis I & Zervou MI 2020 Endometriosis research
in the -omics era. Gene 741 144545. (https://doi.org/10.1016/j.
gene.2020.144545)
Gruenwald P 1942 Origin of endometriosis form the mesenchyme of
the celomic walls. American Journal of Obstetrics and Gynecology 44
470–474. (https://doi.org/10.1016/S0002-9378(42)90484-8)
Grümmer R 2006 Animal models in endometriosis research. Human
Reproduction Update 12 641–649. (https://doi.org/10.1093/humupd/
dml026)
Gruppo Italiano per lo Studio dell’Endometriosi 2001 Relationship
between stage, site and morphological characteristics of pelvic
endometriosis and pain. Human Reproduction 16 2668–2671. (https://
doi.org/10.1093/humrep/16.12.2668)
Hadfield R, Mardon H, Barlow D & Kennedy S 1996 Delay in the
diagnosis of endometriosis: a survey of women from the USA and
the UK. Human Reproduction 11 878–880. (https://doi.org/10.1093/
oxfordjournals.humrep.a019270)
Hassa H, Tanir HM & Uray M 2005 Symptom distribution among
infertile and fertile endometriosis cases with different stages
and localizations. European Journal of Obstetrics, Gynecology,
and Reproductive Biology 119 82–86. (https://doi.org/10.1016/j.
ejogrb.2004.07.025)
Jamilian H, Jamilian M, Samimi M, Afshar Ebrahimi F,
Rahimi M, Bahmani F, Aghababayan S, Kouhi M,
Shahabbaspour S & Asemi Z 2017 Oral carnitine
supplementation influences mental health parameters and
biomarkers of oxidative stress in women with polycystic ovary
syndrome: a randomized double-blind, placebo-controlled trial.
Gynecological Endocrinology 33 442–447. (https://doi.org/10.1080/095
13590.2017.1290071)
Jana SK, Dutta M, Joshi M, Srivastava S, Chakravarty B &
Chaudhury K 2013 1HNMR based targeted metabolite profiling
for understanding the complex relationship connecting oxidative
stress with endometriosis. BioMed Research International 2013 1–9.
(doi:10.1155/2013/329058], 329058.
Jeon SH, Lee MY, Rahman MM, Kim SJ, Kim GB, Park SY,
Hong CU, Kim SZ, Kim JS & Kang HS 2009 The antioxidant,
taurine reduced lipopolysaccharide (LPS)-induced generation of
ROS, and activation of MAPKs and Bax in cultured pneumocytes.
Pulmonary Pharmacology and Therapeutics 22 562–566. (https://doi.
org/10.1016/j.pupt.2009.07.004)
Johnson CH. & Gonzalez FJ 2012 Challenges and opportunities of
metabolomics. Journal of Cellular Physiology 227 2975–2981. (https://
doi.org/10.1002/jcp.24002)
Jong CJ, Azuma J & Schaffer S 2012 Mechanism underlying the
antioxidant activity of taurine: prevention of mitochondrial oxidant
production. Amino Acids 42 2223–2232. (https://doi.org/10.1007/
s00726-011-0962-7)
Kao LC, Germeyer A, Tulac S, Lobo S, Yang JP, Taylor RN,
Osteen K, Lessey BA & Giudice LC 2003 Expression profiling of
endometrium from women with endometriosis reveals candidate
genes for disease-based implantation failure and infertility.
Endocrinology 144 2870–2881. (https://doi.org/10.1210/en.2003-0043)
Karaer A, Tuncay G, Mumcu A & Dogan B 2019 Metabolomics
analysis of follicular fluid in women with ovarian endometriosis
undergoing in vitro fertilization. Systems Biology in Reproductive
Medicine 65 39–47. (https://doi.org/10.1080/19396368.2018.1478469)
Klupczyńska A, Derezi ński P & Kokot ZJ 2015 Metabolomics in
medical sciences – trends, challenges and perspectives. Acta poloniae
pharmaceutica 72 629–641.
Ko WK, Kim SJ, Jo MJ, Choi H, Lee D, Kwon IK, Lee SH, Han IB
& Sohn S 2019 Ursodeoxycholic acid inhibits inflammatory
response and promotes functional recovery after spinal cord injury
in rats. Molecular Neurobiology 56 267–277. (https://doi.org/10.1007/
s12035-018-0994-z)
Lee YH, Tan CW, Venkatratnam A, Tan CS, Cui L, Loh SF,
Griffith L, Tannenbaum SR & Chan JKY 2014 Dysregulated
sphingolipid metabolism in endometriosis. Journal of Clinical
Endocrinology and Metabolism 99 E1913–E1921. (https://doi.
org/10.1210/jc.2014-1340)
Letsiou S, Peterse DP, Fassbender A, Hendriks MM, van den
Broek NJ, Berger R, O DF, Vanhie A, Vodolazkaia A, Van
Langendonckt A, et al. 2017 Endometriosis is associated with
aberrant metabolite profiles in plasma. Fertility and Sterility 107
699–706.e6. (https://doi.org/10.1016/j.fertnstert.2016.12.032)
Leyendecker GL, Wildt L & Mall G 2009 The pathophysiology of
endometriosis and adenomyosis: tissue injury and repair. Archives
of Gynecology and Obstetrics 280 529–538. (https://doi.org/10.1007/
s00404-009-1191-0)
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R492:2
Li J, Guan L, Zhang H, Gao Y, Sun J, Gong X, Li D, Chen P,
Liang X, Huang M, et al. 2018a Endometrium metabolomic
profiling reveals potential biomarkers for diagnosis of endometriosis
at minimal-mild stages. Reproductive Biology and Endocrinology 16 42.
(https://doi.org/10.1186/s12958-018-0360-z)
Li J, Gao Y, Guan L, Zhang H, Sun J, Gong X, Li D, Chen P,
Ma Z, Liang X, et al. 2018b Discovery of phosphatidic acid,
phosphatidylcholine and phosphatidylserine as biomarkers for early
diagnosis of endometriosis. Frontiers in Physiology 9 14. (https://doi.
org/10.3389/fphys.2018.00014)
Luisi S, Pinzauti S, Regini C & Petraglia F 2015 Serum markers
for the non-invasive diagnosis of endometriosis. Women’s Health 11
603–610. (https://doi.org/10.2217/whe.15.46)
Marcinkiewicz J & Kontny E 2014 Taurine and inflammatory
diseases. Amino Acids 46 7–20. (https://doi.org/10.1007/s00726-012-
1361-4)
Marianna S, Alessia P, Susan C, Francesca C, Angela S,
Francesca C, Antonella N, Patrizia I, Nicola C & Emilio C
2017 Metabolomic profiling and biochemical evaluation of the
follicular fluid of endometriosis patients. Molecular Biosystems 13
1213–1222. (https://doi.org/10.1039/c7mb00181a)
Markley JL, Brüschweiler R, Edison AS, Eghbalnia HR,
Powers R, Raftery D & Wishart DS 2017 The future of NMR-
based metabolomics. Current Opinion in Biotechnology 43 34–40.
(https://doi.org/10.1016/j.copbio.2016.08.001)
Mehedintu C, Plotogea MN, Ionescu S & Antonovici M 2014
Endometriosis still a challenge. Journal of Medicine and Life 7
349–357.
Murphy AA, Palinski W, Rankin S, Morales AJ &
Parthasarathy S 1998 Evidence for oxidatively modified lipid-
protein complexes in endometrium and endometriosis. Fertility
and Sterility 69 1092–1094. (https://doi.org/10.1016/s0015-
0282(98)00087-9)
Ni Z, Sun S, Bi Y, Ding J, Cheng W, Yu J, Zhou L, Li M & Yu C
2020 Correlation of fecal metabolomics and gut microbiota in mice
with endometriosis. American Journal of Reproductive Immunology 84
e13307. (https://doi.org/10.1111/aji.13307)
Nicholson JK & Lindon JC 2008 Systems biology: Metabonomics.
Nature 455 1054–1056. (https://doi.org/10.1038/4551054a)
O’Neil TK, Duffy LR, Frey JW & Hornberger TA 2009 The role of
phosphoinositide 3-kinase and phosphatidic acid in the regulation
of mammalian target of rapamycin following eccentric contractions.
Journal of Physiology 587 3691–3701. (https://doi.org/10.1113/
jphysiol.2009.173609)
Oliveira MWS, Minotto JB, de Oliveira MR, Zanotto-Filho A,
Behr GA, Rocha RF, Moreira JC & Klamt F 2010 Scavenging and
antioxidant potential of physiological taurine concentrations against
different reactive oxygen/nitrogen species. Pharmacological Reports 62
185–193. (https://doi.org/10.1016/s1734-1140(10)70256-5)
Parasar P, Ozcan P & Terry KL 2017 Endometriosis: epidemiology,
diagnosis and clinical management. Current Obstetrics and
Gynecology Reports 6 34–41. (https://doi.org/10.1007/s13669-017-
0187-1)
Paula SD, Rodway LA, Winter T, Taylor CG, Zahradka P &
Aukema HM 2018 Anti-inflammatory effects of α-linoleic acid
in M1-like macrophages are associated with enhanced production
of oxylipins from α-linoleic acid and linoleic acid. Journal of
Nutritional Biochemistry 57 121–129. (https://doi.org/10.1016/j.
jnutbio.2018.03.020)
Percie du Sert N, Hurst V, Ahluwalia A, Alam S, Avey MT,
Baker M, Browne WJ, Clark A, Cuthill IC, Dirnagl U, et al.
2020 The ARRIVE guidelines 2.0: updated guidelines for reporting
animal research. PLoS Biology 18 e3000410. (https://doi.org/10.1371/
journal.pbio.3000410)
Pribluda VS, Gubish ER, Lavallee TM, Treston A, Swartz GM &
Green SJ 2000 2-Methoxyestradiol: an endogenous antiangiogenic
and antiproliferative drug candidate. Cancer Metastasis Reviews 19
173–179. (https://doi.org/10.1023/a:1026543018478)
Putri SP, Yamamoto S, Tsugawa H & Fukusaki E 2013
Current metabolomics: technological advances. Journal of
Bioscience and Bioengineering 116 9–16. (https://doi.org/10.1016/j.
jbiosc.2013.01.004)
Rizzo MT, Nguyen E, Aldo-Benson M & Lambeau G 2000 Secreted
phospho-lipase A2 induces vascular endothelial cell migration. Blood
96 3809–3815.
Sampson JA 1927 Peritoneal endometriosis due to the menstrual
dissemination of endometrial tissue into the peritoneal cavity.
American Journal of Obstetrics and Gynecology 14 422–469. (https://doi.
org/10.1016/S0002-9378(15)30003-X)
Sano M, Morishita T, Nozaki M, Yokoyama M, Watanabe Y &
Nakano H 1994 Elevation of the phospholipase A2 activity in
peritoneal fluid cells from women with endometriosis. Fertility and
Sterility 61 657–662. (https://doi.org/10.1016/s0015-0282(16)56642-4)
Shanti A, Santanam N, Morales AJ, Parthasarathy S &
Murphy AA 1999 Autoantibodies to markers of oxidative stress
are elevated in women with endometriosis. Fertility and Sterility 71
1115–1118. (https://doi.org/10.1016/s0015-0282(99)00145-4)
Sinaii N, Plumb K, Cotton L, Lambert A, Kennedy S,
Zondervan K & Stratton P 2008 Differences in characteristics
among 1,000 women with endometriosis based on extent of
disease. Fertility and Sterility 89 538–545. (https://doi.org/10.1016/j.
fertnstert.2007.03.069)
Song M, Ye J, Zhang F, Su H, Yang X, He H, Liu F, Zhu X,
Wang L, Gao P, et al. 2019 Chenodeoxycholic acid (CDCA)
protects against the lipopolysaccharide-induced impairment of the
intestinal epithelial barrier function via the FXR-MLCK pathway.
Journal of Agricultural and Food Chemistry 67 8868–8874. (https://doi.
org/10.1021/acs.jafc.9b03173)
Spratlin JL, Serkova NJ & Eckhardt SG 2009 Clinical applications
of metabolomics in oncology: a review. Clinical Cancer Research 15
431–440. (https://doi.org/10.1158/1078-0432.CCR-08-1059)
Srivastava S, Roy R, Singh S, Kumar P, Dalela D, Sankhwar SN,
Goel A & Sonkar AA 2010 Taurine – a possible fingerprint
biomarker in non-muscle invasive bladder cancer: a pilot study
by 1H NMR spectroscopy. Cancer Biomarkers 6 11–20. (https://doi.
org/10.3233/CBM-2009-0115)
Sun Z, Song J, Zhang X, Wang A, Guo Y, Yang Y, Wang X, Xu K
& Deng J 2018 Novel SWATHTM technology for follicular fluid
metabolomics in patients with endometriosis. Pharmazie 73 318–323.
(https://doi.org/10.1691/ph.2018.7193)
Szyllo K, Tchorzewski H, Banasik M, Glowacka E,
Lewkowicz P & Kamer-Bartosinska A 2003 The involvement
of T lymphocytes in the pathogenesis of endometriotic tissues
overgrowth in women with endometriosis. Mediators of
Inflammation 12 131–138. (https://doi.org/10.1080/096293503100
0134842)
Taherizadeh M, Khoshnia M, Shams S & Joshaghani HR 2017
Comparison of plasma taurine levels between patients with
esophageal cancer and healthy controls. Medical Laboratory Journal
11 1–4.
Urata Y, Koga K, Hirota Y, Akiyama I, Izumi G, Takamura M,
Nagai M, Harada M, Hirata T, Yoshino O, et al. 2014 IL‐1β
increases expression of tryptophan 2,3‐dioxygenase and stimulates
tryptophan catabolism in endometrioma stromal cells. American
Journal of Reproductive Immunology 72 496–503. (https://doi.
org/10.1111/aji.12282)
Varma R, Rollason T, Gupta JK & Maher ER 2004 Endometriosis
and the neoplastic process. Reproduction 127 293–304. (https://doi.
org/10.1530/rep.1.00020)
Vicente-Muñoz S, Morcillo I, Puchades-Carrasco L, Payá V,
Pellicer A & Pineda-Lucena A 2015 Nuclear magnetic resonance
metabolomic profiling of urine provides a non-invasive alternative
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
https://raf.bioscientifica.com © 2021 The authors
Published by Bioscientifica Ltd Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
C N Ortiz et al. Metabolomics and
endometriosis
R502:2
https://raf.bioscientifica.com © 2021 The authors
PublishedbyBioscientificaLtd
to the identification of biomarkers associated with endometriosis.
Fertility and Sterility 104 1202–1209. (https://doi.org/10.1016/j.
fertnstert.2015.07.1149)
Vicente-Muñoz S, Morcillo I, Puchades-Carrasco L, Payá V,
Pellicer A & Pineda-Lucena A 2016 Pathophysiologic
processes have an impact on the plasma metabolomic signature
of endometriosis patients. Fertility and Sterility 106 1733–1741.e1.
(https://doi.org/10.1016/j.fertnstert.2016.09.014)
Vouk K, Hevir N, Ribi č-Pucelj M, Haarpaintner G, Scherb H,
Osredkar J, Moller G, Prehn C, Lanisnik Rižner TL
& Adamski J 2012 Discovery of phosphatidylcholines and
sphingomyelins as biomarkers for ovarian endometriosis. Human
Reproduction 27 2955–2965. (https://doi.org/10.1093/humrep/
des152)
Vouk K, Ribi č-Pucelj M, Adamski J & Rižner TL 2016 Altered
levels of acylcarnitines, phosphatidylcholines, and sphingomyelins
in peritoneal fluid from ovarian endometriosis patients. Journal of
Steroid Biochemistry and Molecular Biology 159 60–69. (https://doi.
org/10.1016/j.jsbmb.2016.02.023)
Wang X, Pattada SP, Zhang W & Welti R 2006 Signaling functions
of phosphatidic acid. Progress in Lipid Research 45 250–278. (https://
doi.org/10.1016/j.plipres.2006.01.005)
Wells G, Shea B, O’Connell D, Peterson J, Welch V, Losos M &
Tugwell P 2013 The Newcastle-Ottawa Scale (NOS) for assessing
the quality of nonrandomised studies in meta-analyses. (available at:
http://wwwohrica/programs/clinical_epidemiology/oxfordasp)
Wishart DS, Tzur D, Knox C, Eisner R, Guo AC, Young N,
Gautam B, Hau DD, Psychogios N, Dong E, et al. 2007
HMDB: the Human Metabolome Database. Nucleic Acids Research 35
D521–D526. (https://doi.org/10.1093/nar/gkl923)
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B,
Hau DD, Psychogios N, Dong E, Bouatra S, et al. 2009 HMDB:
a KnowledgeBase for the human metabolome. Nucleic Acids Research
37 D603–D610. (https://doi.org/10.1093/nar/gkn810)
Witte DP, Wiginton DA, Hutton JJ & Aronow BJ 1991 Coordinate
developmental regulation of purine catabolic enzyme expression in
gastrointestinal and postimplantation reproductive tracts. Journal of
Cell Biology 115 179–190. (https://doi.org/10.1083/jcb.115.1.179)
Wu MY & Ho HN 2003 The role of cytokines in endometriosis.
American Journal of Reproductive Immunology 49 285–296. (https://doi.
org/10.1034/j.1600-0897.2003.01207.x)
Yang H, Lau WB, Lau B, Xuan Y, Zhou S, Zhao L, Luo Z, Lin Q,
Ren N, Zhao X, et al. 2017 A mass spectrometric insight into the
origins of benign gynecological disorders. Mass Spectrometry Reviews
36 450–470. (https://doi.org/10.1002/mas.21484)
Young VJ, Brown JK, Maybin J, Saunders PT, Duncan WC &
Horne AW 2014 Transforming growth factor-β induced Warburg-
like metabolic reprogramming may underpin the development
of peritoneal endometriosis. Journal of Clinical Endocrinology and
Metabolism 99 3450–3459. (https://doi.org/10.1210/jc.2014-1026)
Zondervan KT, Becker CM & Missmer SA 2020 Endometriosis. New
England Journal of Medicine 382 1244–1256. (https://doi.org/10.1056/
NEJMra1810764)
Received in final form 24 January 2021
Accepted 1 April 2021
Accepted Manuscript published online 1 April 2021
This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0
International License.
https://doi.org/10.1530/RAF-20-0047
Downloaded from Bioscientifica.com at 06/08/2026 05:28:48AM
via Open Access. This work is licensed under a Creative Commons
Attribution-NonCommercial-NoDerivatives 4.0 International License.
http://creativecommons.org/licenses/by-nc-nd/4.0/
Text is read by the "Ask this paper" AI Q&A widget below.
Extraction quality varies by source — PMC NXML preserves structure
cleanly, OA-HTML may include some navigation residue, and OA-PDF can
have broken hyphenation. The publisher copy
(via DOI)
is the canonical version.