References
Boretto, M., Cox, B., Noben, M., Hendriks, N., Fassbender, A., Roose, H., Amant, F., Timmerman, D., Tomassetti, C., Vanhie, A., et al. (2017). Development of organoids from mouse and human endometrium showing endometrial epithelium physiology and long-term expandability. Development 144, 1775–1786.
Boretto, M., Maenhoudt, N., Luo, X., Hennes, A., Boeckx, B., Bui, B., Heremans, R., Perneel, L., Kobayashi, H., Van Zundert, I., et al. (2019). Patient-derived organoids from endometrial disease capture clinical heterogeneity and are amenable to drug screening. Nat Cell Biol 21, 1041–1051.
Chapron, C., Vannuccini, S., Santulli, P., Abrão, M.S., Carmona, F., Fraser, I.S., Gordts, S., Guo, S.W., Just, P.A., Noël, J.C., et al. (2020). Diagnosing adenomyosis: an integrated clinical and imaging approach. Hum Reprod Update 26, 392–411.
Chen, T., Xu, Y., Xu, X., Wang, J., Qiu, Z., Yu, Y., Jiang, X., Shao, W., Bai, D., Wang, M., et al. (2024). Comprehensive transcriptional atlas of human adenomyosis deciphered by the integration of single-cell RNA-sequencing and spatial transcriptomics. Protein Cell 15, 530–546.
Chen, Y., Zhu, J., Chen, L., Shen, Y., Zhang, J., and Wang, Q. (2022). SFRP4+IGFBP5hi NKT cells induced neural-like cell differentiation to contribute to adenomyosis pain. Front Immunol 13, 945504.
Cheung, V.C., Peng, C.Y., Marinić, M., Sakabe, N.J., Aneas, I., Lynch, V.J., Ober, C., Nobrega, M.A., and Kessler, J.A. (2021). Pluripotent stem cell-derived endometrial stromal fibroblasts in a cyclic, hormone-responsive, coculture model of human decidua. Cell Rep 35, 109138.
Corsini, N.S., and Knoblich, J.A. (2022). Human organoids: New strategies and methods for analyzing human development and disease. Cell 185, 2756–2769.
Du, X., Zhu, H., Jiao, D., Nian, Z., Zhang, J., Zhou, Y., Zheng, X., Tong, X., Wei, H., and Fu, B. (2022). Human-induced CD49a+ NK cells promote fetal growth. Front Immunol 13, 821542.
Fonseca, M.A.S., Haro, M., Wright, K.N., Lin, X., Abbasi, F., Sun, J., Hernandez, L., Orr, N.L., Hong, J., Choi-Kuaea, Y., et al. (2023). Single-cell transcriptomic analysis of endometriosis. Nat Genet 55, 255–267.
Garcia-Alonso, L., Handfield, L.F., Roberts, K., Nikolakopoulou, K., Fernando, R.C., Gardner, L., Woodhams, B., Arutyunyan, A., Polanski, K., Hoo, R., et al. (2021). Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro. Nat Genet 53, 1698–1711.
Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Valiollah Pour Amiri, V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al. (2022). A Python library for probabilistic analysis of single-cell omics data. Nat Biotechnol 40, 163–166.
Gnecco, J.S., Brown, A., Buttrey, K., Ives, C., Goods, B.A., Baugh, L., Hernandez-Gordillo, V., Loring, M., Isaacson, K.B., and Griffith, L.G. (2023). Organoid co-culture model of the human endometrium in a fully synthetic extracellular matrix enables the study of epithelial-stromal crosstalk. Med 4, 554–579.e9.
Hasanzadeh, E., Ebrahimi-Barough, S., Mahmoodi, N., Mellati, A., Nekounam, H., Basiri, A., Asadpour, S., Ghasemi, D., and Ai, J. (2021). Defining the role of 17β- estradiol in human endometrial stem cells differentiation into neuron-like cells. Cell Biol Int 45, 140–153.
He, X.C., Zhang, J., Tong, W.G., Tawfik, O., Ross, J., Scoville, D.H., Tian, Q., Zeng, X., He, X., Wiedemann, L.M., et al. (2004). BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-β-catenin signaling. Nat Genet 36, 1117–1121.
Karvas, R.M., Khan, S.A., Verma, S., Yin, Y., Kulkarni, D., Dong, C., Park, K., Chew, B., Sane, E., Fischer, L.A., et al. (2022). Stem-cell-derived trophoblast organoids model human placental development and susceptibility to emerging pathogens. Cell Stem Cell 29, 810–825.e8.
Khan, K.N., Fujishita, A., and Mori, T. (2022). Pathogenesis of human adenomyosis: current understanding and its association with infertility. J Clin Med 11, 4057.
Kim, E., Choi, S., Kang, B., Kong, J.H., Kim, Y., Yoon, W.H., Lee, H.R., Kim, S.E., Kim, H.M., Lee, H.S., et al. (2020). Creation of bladder assembloids mimicking tissue regeneration and cancer. Nature 588, 664–669.
Kong, C., Ordoñez, A.A., Turner, S., Tremaine, T., Muter, J., Lucas, E.S., Salisbury, E., Vassena, R., Tiscornia, G., Fouladi-Nashta, A.A., et al. (2021). Embryo biosensing by uterine natural killer cells determines endometrial fate decisions at implantation. FASEB J 35, e21336.
Kraiczy, J., McCarthy, N., Malagola, E., Tie, G., Madha, S., Boffelli, D., Wagner, D.E., Wang, T.C., and Shivdasani, R.A. (2023). Graded BMP signaling within intestinal crypt architecture directs self-organization of the Wnt-secreting stem cell niche. Cell Stem Cell 30, 433–449.e8.
Li, Y., Wang, X., Huang, M., Wang, X., Li, C., Li, S., Tang, Y., Yu, S., Wang, Y., Song, W., et al. (2024). BMP suppresses Wnt signaling via the Bcl11b-regulated NuRD complex to maintain intestinal stem cells. EMBO J 43, 6032–6051.
Li, T., Chan, R.W.S., Lee, C.L., Chiu, P.C.N., Li, R.H.W., Ng, E.H.Y., and Yeung, W.S.B. (2022). WNT5A interacts with FZD5 and LRP5 to regulate proliferation and self- renewal of endometrial mesenchymal stem-like cells. Front Cell Dev Biol 10, 837827.
Liao, Z., Tang, S., Jiang, P., Geng, T., Cope, D.I., Dunn, T.N., Guner, J., Radilla, L.A., Guan, X., and Monsivais, D. (2024). Impaired bone morphogenetic protein (BMP) signaling pathways disrupt decidualization in endometriosis. Commun Biol 7, 227.
Liu, Z., Sun, Z., Liu, H., Niu, W., Wang, X., Liang, N., Wang, X., Wang, Y., Shi, Y., Xu, L., et al. (2021). Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis. Cell Biosci 11, 51.
Lv, F., Li, X., Wang, Y., and Hao, L. (2024). MAGP1 maintains tumorigenicity and angiogenesis of laryngeal cancer by activating Wnt/β-catenin/MMP7 pathway. Carcinogenesis 45, 220–234.
Marečková, M., Garcia-Alonso, L., Moullet, M., Lorenzi, V., Petryszak, R., Sancho-Serra, C., Oszlanczi, A., Icoresi Mazzeo, C., Wong, F.C.K., Kelava, I., et al. (2024). An integrated single-cell reference atlas of the human endometrium. Nat Genet 56, 1925–1937.
Monsivais, D., Clementi, C., Peng, J., Titus, M.M., Barrish, J.P., Creighton, C.J., Lydon, J.P., DeMayo, F.J., and Matzuk, M.M. (2016). Uterine ALK3 is essential during the window of implantation. Proc Natl Acad Sci USA 113, E387–E395.
Monsivais, D., Nagashima, T., Prunskaite-Hyyryläinen, R., Nozawa, K., Shimada, K., Tang, S., Hamor, C., Agno, J.E., Chen, F., Masand, R.P., et al. (2021). Endometrial receptivity and implantation require uterine BMP signaling through an ACVR2A-SMAD1/SMAD5 axis. Nat Commun 12, 3386.
Munro, M.G. (2019). Uterine polyps, adenomyosis, leiomyomas, and endometrial receptivity. Fertil Steril 111, 629–640.
Murphy, A.R., Campo, H., and Kim, J.J. (2022). Strategies for modelling endometrial diseases. Nat Rev Endocrinol 18, 727–743.
Muter, J., Lynch, V.J., McCoy, R.C., and Brosens, J.J. (2023). Human embryo implantation. Development 150, dev201507.
Naftalin, J., Hoo, W., Pateman, K., Mavrelos, D., Holland, T., and Jurkovic, D. (2012). How common is adenomyosis?. A prospective study of prevalence using transvaginal ultrasound in a gynaecology clinic. Hum Reprod 27, 3432–3439.
Patel, J.J., Srivastava, S., and Siow, R.C. (2016). Isolation, culture, and characterization of vascular smooth muscle cells. Methods Mol Biol 1430, 91–105.
Qi, Z., Li, Y., Zhao, B., Xu, C., Liu, Y., Li, H., Zhang, B., Wang, X., Yang, X., Xie, W., et al. (2017). BMP restricts stemness of intestinal Lgr5+ stem cells by directly suppressing their signature genes. Nat Commun 8, 13824.
Rawlings, T.M., Makwana, K., Taylor, D.M., Molè, M.A., Fishwick, K.J., Tryfonos, M., Odendaal, J., Hawkes, A., Zernicka-Goetz, M., Hartshorne, G.M., et al. (2021). Modelling the impact of decidual senescence on embryo implantation in human endometrial assembloids. eLife 10, e69603.
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012). Fiji: an open-source platform for biological-image analysis. Nat Methods 9, 676–682.
Shibata, S., Endo, S., Nagai, L.A.E., H. Kobayashi, E., Oike, A., Kobayashi, N., Kitamura, A., Hori, T., Nashimoto, Y., Nakato, R., et al. (2024). Modeling embryo- endometrial interface recapitulating human embryo implantation. Sci Adv 10, eadi4819.
Tang, S., Cope, D.I., Vasquez, Y.M., and Monsivais, D. (2022). BMP/SMAD1/5 signaling in the endometrial epithelium is essential for receptivity and early pregnancy. Endocrinology 163, bqac043.
Tian, J., Yang, J., Chen, T., Yin, Y., Li, N., Li, Y., Luo, X., Dong, E., Tan, H., Ma, Y., et al. (2023). Generation of human endometrial assembloids with a luminal epithelium using air-liquid interface culture methods. Adv Sci 10, 2301868.
Turco, M.Y., Gardner, L., Hughes, J., Cindrova-Davies, T., Gomez, M.J., Farrell, L., Hollinshead, M., Marsh, S.G.E., Brosens, J.J., Critchley, H.O., et al. (2017). Long- term, hormone-responsive organoid cultures of human endometrium in a chemically defined medium. Nat Cell Biol 19, 568–577.
Unterleuthner, D., Neuhold, P., Schwarz, K., Janker, L., Neuditschko, B., Nivarthi, H., Crncec, I., Kramer, N., Unger, C., Hengstschläger, M., et al. (2020). Cancer- associated fibroblast-derived WNT2 increases tumor angiogenesis in colon cancer. Angiogenesis 23, 159–177.
Wang, J., Ye, F., Chai, H., Jiang, Y., Wang, T., Ran, X., Xia, Q., Xu, Z., Fu, Y., Zhang, G., et al. (2025). Advances and applications in single-cell and spatial genomics. Sci China Life Sci 68, 1226–1282.
Wang, W., Vilella, F., Alama, P., Moreno, I., Mignardi, M., Isakova, A., Pan, W., Simon, C., and Quake, S.R. (2020). Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle. Nat Med 26, 1644–1653.
Winkles, J.A. (2008). The TWEAK-Fn14 cytokine-receptor axis: discovery, biology and therapeutic targeting. Nat Rev Drug Discov 7, 411–425.
Yan, J., Zhou, L., Liu, M., Zhu, H., Zhang, X., Cai, E., Xu, X., Chen, T., Cheng, H., Liu, J., et al. (2024). Single-cell analysis reveals insights into epithelial abnormalities in ovarian endometriosis. Cell Rep 43, 113716.
Yang, Y., Du, Y., Ma, X., Yuan, G., Li, G., Zhang, Q., and Zhou, S. (2025). Transcription factor addictions: exploring the potential Achilles’ Heel of endometriosis. Sci China Life Sci doi: https://doi.org/10.1007/s11427-024-2832-8.
Yildiz, S., Kinali, M., Wei, J.J., Milad, M., Yin, P., Adli, M., and Bulun, S.E. (2023). Adenomyosis: single-cell transcriptomic analysis reveals a paracrine mesenchymal-epithelial interaction involving the WNT/SFRP pathway. Fertil Steril 119, 869–882.
Zhang, H., Xue, J., Li, M., Zhao, X., Wei, D., and Li, C. (2015). Metformin regulates stromal-epithelial cells communication via Wnt2/β-catenin signaling in endometriosis. Mol Cell Endocrinol 413, 61–65.
Zhang, Y., Zhu, H., Chang, H.M., and Leung, P.C.K. (2020). ALK3-SMAD1/5 signaling mediates the BMP2-induced decrease in PGE2 production in human endometrial stromal cells and decidual stromal cells. Front Cell Dev Biol 8, 573028.