Methods
Study design
This study utilized a two-sample bi-directional MR analysis to examine the causal effect of depression or dysthy-
mia on female reproductive disorders, leveraging by GW AS summary statistics. We also employed instrumental-
variable analysis, which emulates a RCT by simulating the random allocation of single nucleotide polymorphisms
(SNPs) in offsprings.
To ensure the robustness of our MR design, we adhered to the guidelines outlined in STROBE-MR24 and care-
fully evaluated three crucial assumptions. First, the genetic instrument used should strongly predict the exposure
of interest, as determined by meeting the genome-wide significance threshold (P < 5 × 10–8) for the instrumental
variants25. Second, the genetic instruments must be independent of any confounding factors that might influence
both the exposure and the outcome of interest26. At last, it is crucial to establish that the genetic instruments solely
impact the outcome through their association with the exposure, rather than through alternative pathways27.
In the reverse MR analysis, we employed a relaxed P threshold (P < 5 × 10–6) for the instrument-exposure
association in order to include more SNPs for traits with limited SNPs (≤ 3) after linkage disequilibrium (LD)
pruning. This approach has been used in many previous MR studies28–30. However, it may increase the risk of
violating the first assumption of MR design.
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Data sources: exposure and outcome variables in GWAS
The FinnGen consortium (https:// www. finng en. fi/ fi, accessed on July 10, 2023) provided GW AS data for expo-
sure (depression or dysthymia: ICD-10 code F3[2, 3]/F341, 48,847 cases & 225,483 controls) and outcomes:
ovarian dysfunction (ICD-10 code E28, 2,010 cases & 200,581 controls), PCOS (ICD-10 code E282, 13,142
cases & 107,564 controls), ovarian cysts (ICD-10 code N83[0–2], 20,750 cases & 107,564 controls); uterine
conditions: AUB (ICD-10 code N93, 10,319 cases & 107,564 controls), endometriosis(ICD-10 code N80, 15,088
cases & 10,7564 controls), leiomyoma of uterus(ICD-10 code D25, 31,661 cases & 179,209 controls); fertility or
pregnancy-related diseases: female infertility (ICD-10 code N97, 13,142 cases & 107,564 controls), spontaneous
abortion (ICD-10 code O03, 16,906 cases & 149,622 controls), eclampsia (ICD-10 code O15, 452 cases & 194,266
controls), pregnancy hypertension (ICD-10 code O10|O11|O13|O14|O15|O16, 14,727 cases & 196,143 controls),
gestational diabetes (ICD-10 code O244, 13,039 cases & 197,831 controls), excessive vomiting in pregnancy
(ICD-10 code O21, 2,361 cases & 179,899 controls). The GW AS data from the UK Biobank study (http:// www.
neale lab. is/ uk- bioba nk/) provided additional outcomes, including cervical cancer (1450 cases & 192,703 controls)
and uterine/endometrial cancer (906 cases & 193,247 controls). Detailed information about the characteristics
of the studies and consortia used can be found in Additional file 1: Table S5.
As per the International Statistical Classification of Diseases and Related Health Problems 10th Revision,
depression or dysthymia is a multifaceted mental health disorder encompassing various conditions such as
depressive episode, recurrent depressive disorder, and dysthymia. Depressive episode is characterized by symp-
toms such as low mood, reduced energy, decreased activity, loss of interest, and difficulty concentrating. The
severity of the symptoms can range from mild to moderate or severe, depending on their number and intensity.
Recurrent depressive disorder involves repeated episodes of depression without any history of mania, and the
severity and duration can vary. Dysthymia, on the other hand, is a chronic form of depression that persists for
several years but does not meet the criteria for recurrent depressive disorder.
MR analysis
To identify the causal relationship between depression/dysthymia and female reproductive disorders, three differ-
ent MR methods, namely random effect inverse variance weighting (IVW), MR-Egger, weighted median (WM),
and MR-PRESSO were utilized to address heterogeneity of variation and pleiotropic effects. Using multiple esti-
mators in MR analysis improves the robustness and consistency of our findings by accounting for potential biases
and uncertainties. Each estimator has unique strengths and limitations and makes different assumptions about
genetic instrument validity and pleiotropy, which could affect the accuracy of estimates. By utilizing multiple
estimators, we can evaluate the sensitivity of our results to different assumptions and increase confidence in the
validity of our findings while mitigating concerns related to underlying assumptions. SNPs and abnormal values
associated with female reproductive status, as identified by MR-PRESSO, were excluded31. IVW served as the
primary outcome, while MR-Egger and weighted median were employed to improve the estimation of IVW , as
they offer more reliable estimates in a broader range of scenarios, albeit with lower efficiency (wider confidence
intervals). MR-Egger, although allowing for pleiotropic effects in all genetic variations, assumes that such effects
are independent of the association between variation and exposure32. The weighted median method permits the
inclusion of invalid instruments under the assumption that at least half of the instruments used in MR analysis
are valid33. In IVW analysis, the weighted regression slope of the SNP result, showing effect on the SNP exposure
with the intercept constrained to zero, represents the estimated outcome. For significant estimates, the MR-Egger
intercept test and leave-one-out analysis were employed to further assess horizontal pleiotropy. Cochran’s Q test
was also used to identify heterogeneity. A funnel plot was utilized to evaluate possible directional pleiotropy,
akin to assessing publication bias in meta-analysis.
Furthermore, prior to MR analysis, stringent filtering steps were implemented to ensure SNP quality. Firstly,
linkage disequilibrium (LD, R2 ≥ 0.001 within 10 MB) was aggregated. Secondly, SNPs were required to reach the
genome-wide significance threshold of P < 5 × 10–8 in relation to the relevant exposure. Thirdly, we assessed the
strength of our instrument variables using two parameters: the proportion of variance explained (R2) and the F
statistic. The R2 was calculated as R2 = β2 × 2 × MAF × (1 − MAF), where β represents the estimated effect and MAF
indicates the minor allele frequency34. The F statistic was calculated using the formula F = [(N – k − 1)/k] × R2/
(1 − R2), where N represents the sample size, k represents the number of included SNPs, and R2 represents the
proportion of variance explained by the genetic variants34. The obtained F statistic values ranged from 215 to
400, as outlined in Additional file 1: Table S1, strongly indicating that the selected genetic variants effectively
serve as suitable proxies for the investigated exposure35,36.
Risk factors
In order to investigate the genetic mechanisms that link depression/dysthymia with female reproductive dis-
orders, we conducted MR analyses using depression/dysthymia as exposure and several potential mediators
as outcomes. These potential mediators included drinking, smoking, coffee intake, body mass index (BMI),
circulating leptin levels, obesity, fasting insulin, insulin secretion rate, and diabetes37–39. GW AS summary data
for these potential mediators were obtained from the IEU OpenGW AS database (https:// gwas. mrcieu. ac. uk/,
accessed on August 2, 2023)40. Detailed information regarding each data source can be found in Table 1. Depres-
sion/ dysthymia were considered as exposures, while the aforementioned potential risk factors were treated as
outcomes for Mendelian randomization analysis. The primary results were evaluated based on estimates derived
from IVW . Statistical significance was defined as P < 0.05.
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Statistical analysis
The statistical analyses were conducted using the TwoSampleMR package (version 0.5.7) and MRPRESSO pack-
age (version 1.0) within the R environment (version 4.3.0).To address the issue of multiple testing, a Bonferroni
correction was applied by setting the significance threshold at 0.05 divided by the number of MR estimates (14),
resulting in a Bonferroni-corrected P-value of 3.57 × 10−3 . Additionally, associations with a P-value less than 0.05
but not yet meeting the Bonferroni-corrected threshold were considered nominally significant41.
Ethics approval and consent to participate
The data utilized in this study were obtained from publicly available, de-identified sources and were originally
collected from participant studies that had already received approval from an ethics committee regarding human
experimentation. As a result, no additional ethical approval was necessary for this particular study.
Discussion
Based on large-scale GW AS data from the Finngen and UK Biobank, this study employed a variety of MR
approaches to comprehensively examine the potential causal or reverse association between depression/dys-
thymia and female reproductive disorders. Our research provides compelling evidence that individuals with
depression /dysthymia have a significantly higher risk of developing the following conditions: PCOS (42.9%
increased risk), ovarian cysts (36.4% increased risk), AUB (41.2% increased risk), and endometriosis (47.3%
increased risk). These results call for more attentions on depression/ dysthymia management and treatment in
term of reducing female reproductive diseases such as endometriosis, PCOS and AUB. For instance, integrating
screening for depressive symptoms during routine gynecological exams, implementing non-pharmacological
interventions such as cognitive-behavioral therapy and exercise, ensuring careful administration of pharmaco-
logical treatments under professional guidance, and strengthening social support systems are all crucial com-
ponents in addressing this issue.
The utilization of MR in our investigations provides a decreased susceptibility to biases stemming from
confounding factors or reverse causation, as compared to observational epidemiological studies. In general, the
statistical power of the IVW approach is significantly higher compared to other MR approaches, particularly
MR-Egger43. Confidence intervals were derived from the same statistical equations used to calculate P val -
ues. Consequently, it is expected that the MR-Egger results, with lower statistical power, would yielded wider
Figure 3. Causal effects for depression or dysthymia on reproductive-related cancers.
Table 2. Sensitivity analysis of the causal association between depression/dysthymia and the risk of female
reproductive disorders.
Outcome Cochran Q value Q test P MR-Egger intercept P MR-PRESSO P value
Ovarian dysfunction 22.437 0.263 0.036 0.495 0.290
PCOS 29.854 0.054 −0.028 0.095 0.091
Ovarian cysts 27.109 0.102 −0.037 0.134 0.134
AUB 22.141 0.277 −0.019 0.463 0.292
Endometriosis 27.213 0.100 0.003 0.133 0.142
Leiomyoma of uterus 27.331 0.053 −0.037 0.031 0.059
Female infertility 11.865 0.891 0.010 0.624 0.894
Spontaneous abortion 14.608 0.747 0.028 0.119 0.744
Eclampsia 23.613 0.211 0.085 0.451 0.214
Pregnancy hypertension 27.966 0.045 0.017 0.488 0.044
Gestational diabetes 23.247 0.227 −0.009 0.688 0.232
Cervical cancer 18.231 0.441 0.001 0.395 0.461
Uterine/endometrial cancer 16.717 0.543 0.001 0.118 0.549
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confidence intervals and non-significant P values when compared to IVW in the present study. Thus, IVW was
primarily employed as the main method for identifying potentially significant findings. Sensitivity analyses
and other MR methods were utilized to ensure the robustness of the IVW estimates. If there is any evidence of
horizontal pleiotropy, IVW estimates could be biased. In such cases, MR-Egger estimates should be considered
because this method accommodates the unbalanced or directional effects of horizontal pleiotropy across all
SNPs44. Most MR analyses also require consistent beta directions across all MR approaches37,45, as is the case in
our study, which means that the beta coefficients of all MR approaches should consistently be positive or nega-
tive to obtain a robust conclusion. While it is essential to exercise caution when interpreting causal associations
derived from MR due to the presence of untestable assumptions inherent to this method, the convergence of our
estimates across various methodologies and analytical approaches strongly supports the causal involvement of
depression or dysthymia in the etiology of female reproductive disorders.
Our study provides initial evidence indicating that genetically predicted depression/dysthymia may be a
causal factor, rather than a consequence, of various female reproductive diseases. Specifically, our results demon-
strate significant associations between genetically predicted depression/dysthymia and the following conditions:
Endometriosis (OR = 1.47, 95% CI 1.27–1.71), PCOS (OR = 1.43, 95% CI 1.28–1.59), AUB (OR = 1.41, 95% CI
1.20–1.66), and Ovarian cysts (OR = 1.36, 95% CI 1.20–1.55). These findings align with other MR studies that
have also suggested depression as a risk factor for PCOS21 and endometriosis 46.
It is important to emphasize that our study did not establish a causal relationship between depression and
some other conditions, including ovarian dysfunction, leiomyoma of uterus, female infertility, spontaneous
abortion, eclampsia, pregnancy hypertension, excessive vomiting in pregnancy, cervical cancer, or uterine/
endometrial cancer. Additionally, our analysis of reverse causality found no evidence supporting such a reverse
link. Previous MR studies have also assessed the causal relationship between depression and ovarian cancer,
revealing no significant association23. Moreover, a cohort study supports our findings by indicating that depres-
sion is unlikely to be the cause of excessive vomiting in pregnancy47. However, it should be noted that several
observational studies suggest a higher likelihood of depression among patients with ovarian dysfunction 48,
female infertility49, leiomyoma of uterus50, abortion51, pregnancy hypertension52, eclampsia53, cervical cancer54
and endometrial cancer55. These studies propose that depression may either result from these conditions or con-
tribute to their development. The discrepancies observed between the results of MR studies and observational
studies, as well as the controversies within the latter, can be attributed to confounding factors and biases inherent
in real-world epidemiological studies. Notably, MR, which functions as an analogous approach to randomized
Figure 4. Scatter plots depicting the impact of genetically predicted depression/dysthymia on the risk of female
reproductive disorders.
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controlled trials, emerges as a more effective tool for drawing causal inferences due to its reduced susceptibility
to confounding influences23.
As indicated by the risk factor analyses, drinking behaviors may play a role in the susceptibility of female
reproductive disorders linked to depression or dysthymia. Research has demonstrated a positive association
between alcohol dependence and depression, indicating the potential involvement of interconnected neuro-
biological mechanisms56,57. It is widely recognized that alcohol negatively affects female reproduction38. How-
ever, whether depression influences women’s reproductive health through similar neural mechanisms remains
uncertain.
Numerous mechanisms have been proposed to elucidate the impact of depression on female reproduc-
tive status. It is widely believed that depression exerts its influence on female reproduction through the
Figure 5. Funnel plots depicting the impact of genetically predicted depression or dysthymia on the risk
of female reproductive disorders. The funnel plots show the Inverse variance weighted and MR-Egger MR
estimate of each depression/dysthymia single-nucleotide polymorphism with different female reproductive
disorders versus 1/standard error (1/SEIV). (a) PCOS; (b) ovarian cysts; (c) AUB; (d) endometriosis; (e)
leiomyoma of the uterus; (f) gestational diabetes.
Table 3. Risk factors analysis.
Outcomes
IVW Causal effect (95%
CI) P value Heterogeneity Q value P value MR-Egger Intercept P value
Drinking 1.016(1.007–1.025) 0.001 41.833 0.001 −0.001 0.672
Smoking 0.999 (0.991–1.008) 0.885 22.509 0.210 −0.002 0.358
Coffee intake 1.024 (0.992–1.057) 0.141 57.301 2.91 × 10−6 0.009 0.202
BMI 0.923 (0.848–1.004) 0.061 214.664 2.19 × 10−37 0.003 0.872
Circulating leptin levels 0.927 (0.811–1.061) 0.272 19.599 0.188 −0.033 0.197
Obesity 0.999 (0.996–1.003) 0.687 36.406 0.003 4.56 × 10−6 0.995
Fasting insulin 0.99 (0.922–1.062) 0.771 18.934 0.396 −0.003 0.820
Insulin secretion rate 0.67 (0.433–1.038) 0.073 13.667 0.691 −0.027 0.776
Diabetes 0.994 (0.983–1.005) 0.273 52.285 1.20 × 10−6 −0.001 0.629
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hypothalamic–pituitary–adrenal (HPA) axis and the hypothalamic-pituitary-ovarian (HPO) axis58–61.Cortico-
tropin-releasing hormone (CRH), originating from the hypothalamus, is implicated in various reproductive
processes, including follicular development, ovulation, and luteolysis in the ovarian CRH62,63. Furthermore,
recent findings indicate that CRH-R1 is expressed in reproductive tissues such as the ovary, endometrium, and
myometrium, and plays a pivotal role in regulating reproductive functions62–64.In addition, abnormal lactic acid
metabolism and glycolysis may serve as a link between depression and reproductive diseases. Studies conducted
on mice have demonstrated that the modulation of lactic acid homeostasis can influence neuronal excitability and
depression-like behavior65. Associations have been found between lactic acid and uterine remodeling66, abnormal
glycolysis and ovarian cancer67, as well as oocyte quality of PCOS patients68.Moreover, depression often coex-
ists with an imbalance in intestinal flora69–71. Disruptions in gastrointestinal ecology actively contribute to the
development and metastasis of gynecological tumors, such as cervical cancer, endometrial cancer, and ovarian
cancer72. Notably, several studies have revealed that the use of probiotics can ameliorate depressive symptoms
and regulate sex hormone levels, offering potential therapeutic benefits for women with PCOS and gestational
diabetes73–75.Besides, chronic inflammation and oxidative stress are prominent features of depression76,77 and
pathological conditions pertaining to female reproductive health, including PCOS, ovarian dysfunction, endo -
metriosis, gestational diabetes, and leiomyoma of uterus78–82. Inflammatory processes are intertwined with the
onset of depression, which can further exacerbate the inflammatory response and detrimentally impact the
reproductive system83–85.
However, it is essential to acknowledge that our study possesses several inherent limitations that necessitate
cautious interpretation. Firstly, the generalizability of our findings to diverse ethnic groups with distinct life-
styles and cultural backgrounds may be limited, as our study exclusively focused on individuals of European
ancestry. Secondly, it is essential to recognize the inherent challenges of MR analyses, which rely on the random
allocation of genetic variants, in fully disentangling mediation from pleiotropy. Plausible scenarios exist wherein
genetic variants within our genome may exert simultaneous influences on multiple phenotypes. Furthermore,
the absence of significant findings in our study can be attributed to statistical power constraints and inadequate
representation of SNPs. The persisting issue of "missing heritability" in various polygenic diseases and traits,
particularly psychiatric disorders, may be addressed through ongoing research utilizing SRS and LRS technolo-
gies to explore rare variants86. Consequently, our ability to draw definitive conclusions regarding true causal
relationships is impeded. Although we attempted to enhance sensitivity by relaxing the exposure threshold in
our reverse causality MR analysis, the limited number of strongly associated SNPs analyzed may result in reduced
statistical power to detect significant associations or limit the generalizability of the findings. Given the inher -
ent limitations of the Finngen and UK Biobank datasets, such as our inability to access participants’ individual
data, it is imperative that future studies are conducted to validate causal relationships and explore underlying
mechanisms. Such investigations are crucial for generating meaningful clinical recommendations that accurately
inform medical practice.
In conclusion, utilizing extensive genetic summary data, our study provides strengthened evidence support-
ing a causal link between depression/dysthymia and the risk of specific female reproductive disorders, including
endometriosis, PCOS, AUB, ovarian cysts and gestational diabetes. However, the reverse causal relationship
between these conditions and depression remains undetermined. These findings highlight the significance of
mental health in both the prevention and treatment of female reproductive disorders. While our results align
with previous observational studies to some extent, further validation through larger prospective studies and
in-depth mechanistic investigations is necessary to comprehensively elucidate the causal relationship between
depression and various types of reproductive conditions.
Data availability
All data are publicly available. The data sources for this study include the FinnGen consortium (https:// www.
finng en. fi/ fi), the UK Biobank (http:// www. neale lab. is/ uk- bioba nk/), and the IEU OpenGW AS database (https://
gwas. mrcieu. ac. uk/) .
Received: 1 September 2023; Accepted: 29 February 2024
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