Genomic evidence of Y chromosome microchimerism in the endometrium during endometriosis and in cases of infertility

Muzaffer A Bhat, Muzaffer Ahmed Bhat, Jai Bhagwan Sharma, Jai B Sharma, Kallol K Roy, Kallol Kumar Roy, Jayasree Sengupta, Debabrata Ghosh
Reproductive biology and endocrinology : RB&E · 2019 · vol. 17(1) , pp. 22 · doi:10.1186/s12958-019-0465-z · PMID:30760267 · W2921269376
article OA: gold CC0 ⤵ 24 in-corpus citations
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Abstract

BACKGROUND: Previous studies, which were primarily based on the fluorescent in-situ hybridisation (FISH) technique, revealed conflicting evidence regarding male foetal microchimerism in endometriosis. FISH is a relatively less sensitive technique, as it is performed on a small portion of the sample. Additionally, the probes used in the previous studies specifically detected centromeric and telomeric regions of Y chromosome, which are gene-sparse heterochromatised regions. In the present study, a panel of molecular biology tools such as qPCR, expression microarray, RNA-seq and qRT-PCR were employed to examine the Y chromosome microchimerism in the endometrium using secretory phase samples from fertile and infertile patients with severe (stage IV) ovarian endometriosis (OE) and without endometriosis. METHODS: Microarray expression analysis followed by validation using RNA-seq and qRT-PCR experiments at the RNA levels and further validation at the DNA level by qPCR of target inserts for selected targets in eutopic endometrium samples obtained from control (CON) and stage IV ovarian endometriosis (OE), either from fertile (FCON and FOE; n = 30/each) or infertile (ICON and IOE; n = 30/each) women, were performed. RESULTS: Six coding (AMELY, PCDH11, SRY, TGIF2LY, TSPY3, and USP9Y) and 10 non-coding (TTTY2, TTTY4C, TTTY5, TTTYY6, TTTY8, TTTY10, TTTY14, TTTY21, TTTY22, and TTTY23) genes exhibited a bimodal pattern of expression characterised by low expression in samples from fertile patients and high expression in samples from infertile patients. Seven coding MSY-linked genes (BAGE, CD24, EIF1AY, NLGN4Y, PRKY, VCY and ZFY) exhibited differential regulation in microarray analysis, and this change was validated by RNA-seq or qRT-PCR. DNA inserts for 7 genes in various samples were validated by qPCR. The prevalence and concentration of PCR-positive target inserts for BAGE, PRKY, TTTY9A and ZFY displayed higher values in the fertile, control (FCON) patients compared with the fertile, endometriosis patients (FOE). CONCLUSION: Several coding and non-coding MSY-linked genes displayed microchimerism as evidenced by the presence of their respective DNA inserts, along with their differential transcript expression, in the endometrium during endometriosis and in cases of infertility.

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Condition tags

mesh:D004715endometriosisinfertility

MeSH descriptors

Chimerism Chromosomes, Human, Y Endometriosis Genomics Infertility, Female Adult Chromosomes, Human, Y Endometriosis Endometrium Endometrium Female Fertility Fertility Gene Expression Profiling Gene Expression Profiling Genomics Humans Infertility, Female Male Seminal Plasma Proteins

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