Abstract
Processed single-cell RNAseq and multiome sequencing--single-nucleus RNAseq and ATACseq for mESCs Filename Description scrna_deepdycle.h5ad single-cell RNAseq data, has information about unsplcied and spliced levels and the inferred cell cycle phase snrna_deepdycle_rep1.h5ad single-nulceus RNAseq data (replicate 1), has information about unsplcied and spliced levels and the inferred cell cycle phase snrna_deepdycle_rep2.h5ad single-nulceus RNAseq data (replicate 2), has information about unsplcied and spliced levels and the inferred cell cycle phase body_coverage_lif1.tsv.gz single nucleus ATACseq data (replicate 1), counts table of ATACseq peaks mapped to the genes body_coverage_lif2.tsv.gz single nucleus ATACseq data (replicate 2), counts table of ATACseq peaks mapped to the genes model_predictions.zip gene-wise predictions for gene expression--unspliced and spliced, and mRNA metabolism rates--synthesis, splicing, export, and degradation rates for single-cell and single-nucleus data
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Published January 5, 2024
| Version v1
Dataset
Open
Oscillatory dynamics of mRNA metabolism and chromatin accessibility in mESCs during the cell cycle
Authors/Creators
Description
Processed single-cell RNAseq and multiome sequencing--single-nucleus RNAseq and ATACseq for mESCs
| Filename | Description |
| scrna_deepdycle.h5ad | single-cell RNAseq data, has information about unsplcied and spliced levels and the inferred cell cycle phase |
| snrna_deepdycle_rep1.h5ad | single-nulceus RNAseq data (replicate 1), has information about unsplcied and spliced levels and the inferred cell cycle phase |
| snrna_deepdycle_rep2.h5ad | single-nulceus RNAseq data (replicate 2), has information about unsplcied and spliced levels and the inferred cell cycle phase |
| body_coverage_lif1.tsv.gz | single nucleus ATACseq data (replicate 1), counts table of ATACseq peaks mapped to the genes |
| body_coverage_lif2.tsv.gz | single nucleus ATACseq data (replicate 2), counts table of ATACseq peaks mapped to the genes |
| model_predictions.zip | gene-wise predictions for gene expression--unspliced and spliced, and mRNA metabolism rates--synthesis, splicing, export, and degradation rates for single-cell and single-nucleus data |
Files
model_predictions.zip
Files
(2.4 GB)
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