We will combine self‐reported and clinical data with biomarkers and other biological readouts. All questionnaire and clinical data are administered in Research Electronic Data Capture (REDCap), a secure web application for building and managing online surveys and databases hosted by The Capital Region of Denmark and Lund University.
29
,
30
A detailed web‐based questionnaire specifically for this project has been developed in collaboration with public health experts within questionnaire development. Validated scales previously used either in population‐based studies or in studies of fertility patients have been applied whenever possible. The areas covered in the questionnaire along with selected references are presented in Table 1 . The questionnaire is identical for male and female participants for most items. Only questions regarding reproductive history, health, and sexuality are sex specific. Study participants are asked to complete the questionnaire prior to the clinical visit.
Areas covered in the RUBIC questionnaire with selected references
Years together with partner, cohabitation status
Living together with children
Previous pregnancies and outcomes
Previous fertility treatment and outcomes
Duration of current attempt to conceive
Reasons for seeking fertility treatment
1
,
34
Communication regarding childlessness (with partner and others)
35
Infertility‐specific self‐efficacy
Marital benefit (strengthened relationship because of infertility)
36
Infertility‐specific stress
37
,
38
,
39
General health (self‐rated SF‐12v2)
40
,
41
Specific diseases (somatic and mental), recent fever (men only)
Chemotherapy
Gastrointestinal symptoms and stool form (The Bristol Stool Form Scale [BSCS])
42
Reproductive health including genital diseases and surgery
Pubertal timing
Medication
Dietary supplements
Muscle enhancing supplements (men only)
General quality of life
43
,
44
Sleep
Stress (perceived stress
45
,
46
and stressful life events, modified from
47
)
Depressive symptoms (Mental Health Inventory [MHI]‐5, Short Form‐36)
48
,
49
,
50
,
51
Anxiety (Generalized Anxiety Disorder [GAD‐7])
52
,
53
,
54
,
55
Sexual satisfaction
56
Sexual orientation
57
Sexual problems
Physical activity (International Physical Activity Questionnaire [IPAQ]),
58
sedentary behavior
Tobacco smoking habits (different products, current and previous habits)
E‐cigarette use
Alcohol intake
Drugs
Dietary habits
Use of personal care products
Family (origin, parental age, siblings, adoption)
Fetal life and birth
Parents’ reproductive history
Chronic diseases in the family (gender specific)
Education
Work (employment status, specific job title, working conditions, and exposures related to specific occupations)
Psychosocial working environment
Work–life balance
Note : For inquiries about the questionnaire, please contact Lærke Priskorn:
[email protected].
Both individuals within the infertile couple undergo a standardized clinical investigation including genital ultrasound and a dual‐energy X‐ray absorptiometry (DXA) scan. In addition, men are subjected to a complete andrological work‐up and women will undergo a complete gynecological examination. A full overview of the applied physical examinations and radiological modalities is presented in Table 2 .
Overview of the physical and radiological examinations in RUBIC
Height (standing and sitting)
Weight
Body mass index
Arm span
Waist and hip circumference
Blood pressure and heart rate
Ankle–Brachial pressure index
Respiratory capacity (spirometry)
Whole‐body bone mineral density
Regional bone mineral density
Body composition (fat distribution, lean mass)
Testis size (Prader's orchidometer), consistency, and position
Scrotal and penile abnormalities
Varicocoele
Pubic hair distribution
Gynecomastia
Ultrasound: testis size, echoic pattern, and presence of testicular microlithiasis and epididymal abnormalities
Anatomical abnormalities
Ovarian and uterine anatomy (transvaginal ultrasound)
Antral follicle count (transvaginal ultrasound)
The following biological samples are collected before fertility treatment: blood (whole blood, serum, and plasma), urine, saliva, rectal swab, feces, and hair from both sexes, and additionally an endometrial biopsy and vaginal swab in women, and semen in men. Furthermore, during fertility treatment, ovarian follicular fluid and granulosa and cumulus cells are collected in women and semen is collected in men.
Some of the biological samples will be analyzed as part of the routine fertility work‐up, whereas others will be stored at –80°C in the Copenhagen Hospital Biobank (for Danish participants) or Regionalt biobankscentrum, Södra sjukvårdsregione n (for Swedish participants) for future scientific projects (Table 3 ).
Overview of future analyses based on biobank material of biological samples
Granulosa and cumulus cells: Genomics, epigenomics, transcriptomics, proteomics, and cell‐free DNA/RNA analysis
Follicular fluid: Hormone analysis, proteomics, and cell‐free DNA/RNA analysis
For both men and women, several basic health markers will be assessed as part of the clinical work‐up, including anemia, inflammatory markers, and lipid profiles. For men, markers of liver, kidney, and thyroid function are measured as well. Additionally, the SARS‐CoV‐2 antibody status will be assessed, highlighting the ability to add additional tests in response to emerging threats.
In men, morning and (preferably) fasting blood samples will be analyzed for serum levels of testosterone, sex hormone‐binding globulin (SHBG), luteinizing hormone (LH), follicle‐stimulating hormone (FSH), estradiol, and inhibin B. In women, serum levels of FSH, LH, anti‐Müllerian hormone, SHBG, testosterone, and progesterone will be measured.
Male participants will be asked to deliver two semen samples (2–5 days abstinence period) prior to the physical examination. Assessment of semen volume, sperm concentration, total sperm count, motility, vitality, and morphology is subsequently performed according to the World Health Organization's recommendations.
31
In addition, the acrosomal status,
32
mixed antiglobulin reaction, fructose, antisperm antibodies, and the leukocyte concentration are assessed and an aliquot stored for subsequent sperm DNA fragmentation analysis (Sperm Chromatin Structure assays). The remaining sample is purified by gradient centrifugation and seminal plasma and the purified spermatozoa are stored for later investigations.
Samples are collected and stored for future broad‐spectrum analyses of exposure biomarkers for environmental chemicals with known or suspected endocrine disrupting abilities or effect biomarkers related to exposure to endocrine‐disrupting chemicals. Primary specimen matrices for toxicological analyses are urine, serum, ethylenediaminetetraacetic acid whole blood, seminal plasma, and hair. Field‐blank samples will be included.
Y‐chromosome microdeletion analyses and karyotype will be assessed in all included men with sperm concentration below 5 mill./ml. Currently, in Denmark, the analysis of Y‐chromosome microdeletions is performed on all infertile men. Also, karyotyping is performed routinely in women with premature ovarian failure. DNA will be isolated from peripheral blood lymphocytes.
Specimen collection for various omics analyses includes blood, isolated spermatozoa, seminal plasma, fecal samples/rectal swabs, follicle cells, vaginal swabs, endometrial biopsy, and hair. The following omics are intended but may change as novel technological options evolve:
‐ Microbiome analysis of saliva, ejaculate, vaginal swabs, and fecal samples/rectal swabs; ‐ RNA sequencing of serum, seminal plasma, and purified sperm cells; ‐ DNA methylation analysis of purified sperm and follicular cells; ‐ Whole‐genome sequencing of DNA isolated from blood and spermatozoa; ‐ Proteomics analysis of serum, seminal plasma, spermatozoa, and hair.
Microbiome analysis of saliva, ejaculate, vaginal swabs, and fecal samples/rectal swabs;
RNA sequencing of serum, seminal plasma, and purified sperm cells;
DNA methylation analysis of purified sperm and follicular cells;
Whole‐genome sequencing of DNA isolated from blood and spermatozoa;
Proteomics analysis of serum, seminal plasma, spermatozoa, and hair.
All women—whether they become pregnant naturally, through MAR, or not at all—will be followed in the medical birth registers to obtain information on potential childbirth. Furthermore, several scientific questions regarding causes of infertility and infertility‐related long‐term morbidity and mortality will be answered through the linkage of information from RUBIC to the Danish and Swedish national registers using the unique civil registration number. Most of these national registers were established relatively early in the 20 th century and represent a unique source of perinatal, childhood, and adult health and socioeconomic characteristics of the infertile couples, their parents, and their children. The extent and quality of this information is the key to adequately addressing potential transgenerational reproductive effects of exposures. The main registers and a brief description of their content are listed in Table 4 .
Overview of national registers and potential information available for linkage to the RUBIC participants using the unique Danish and Swedish personal identification numbers
DK: 1968
SE: 1968
DK: 1973
SE: 1973
DK: 1977
SE: 1987
DK: 1943
SE: 1958
DK: 1946
SE: 2001
DK: 1994
SE: 2007
DK: 1970
SE: 1961
DK: 1994
SE: 2005