Alexis J Combes

No ORCID on file · 7 papers in corpus · active 2022-2025

Study types

  • dataset 3
  • article 2
  • other 1
  • preprint 1

Condition tags

  • endometriosis 7
  • infertility 2
other 2025
Anticlustering for sample allocation to minimize batch effects
Cell reports methods ·doi:10.1016/j.crmeth.2025.101137

High-throughput sequencing enables efficient processing of DNA and RNA samples in batches, but batch effects can obscure true biological signal. We propose using anticlustering as an automated method to assign samples to balanced batches, m…

article 2023
ENDOMETRIAL SUBCELLULAR ALTERATIONS IN ENDOMETRIOSIS IDENTIFIED BY SINGLE-CELL ANALYSIS ACROSS THE MENSTRUAL CYCLE
·doi:10.1016/j.fertnstert.2023.08.204
dataset 2022
Additional file 1 of Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood
·doi:10.6084/m9.figshare.19602462

Additional file 1: Table S1. Samples used in the study. Endo: endometriosis; PE: proliferative; SE: secretory: MSE: mid secretory, LSE: late secretory; N/A: not applicable.

dataset 2022
Additional file 2 of Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood
·doi:10.6084/m9.figshare.19602465

Additional file 2: Table S2. CyTOF panels used in the study. Left: broad panel, right: focused panel.

dataset 2022
Additional file 9 of Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood
·doi:10.6084/m9.figshare.19602489

Additional file 9: Table S3. Expression of the significant markers between endometriosis and controls in all cell types in endometriosis versus controls from the focused panel. Significant values are highlighted in grey. Endo: endometriosis…

article 2022
Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood
BMC medicine ·doi:10.1186/s12916-022-02359-4

Abstract Background Endometriosis is a chronic, estrogen-dependent disorder where inflammation contributes to disease-associated symptoms of pelvic pain and infertility. Immune dysfunction includes insufficient immune lesion clearance, a pr…

preprint 2022
Deep Immunophenotyping Reveals Endometriosis is Marked by Dysregulation of the Mononuclear Phagocytic System in Endometrium and Peripheral Blood
·doi:10.1101/2022.02.02.478809

Abstract Background Endometriosis is a chronic, estrogen-dependent disorder where inflammation contributes to disease-associated symptoms of pelvic pain and infertility. Immune dysfunction includes insufficient immune lesion clearance, a pr…