Juan C. Irwin

ORCID: 0000-0002-5647-4331 · 36 papers in corpus · active 1994-2025

Study types

  • article 20
  • other 6
  • preprint 4
  • dataset 3
  • review 2

Condition tags

  • endometriosis 30
  • mesh:D004715 14
  • infertility 13
  • adenomyosis 3
  • dysmenorrhea 2
  • chronic_pelvic_pain 1
other 2025
Cell reports methods ·doi:10.1016/j.crmeth.2025.101137

High-throughput sequencing enables efficient processing of DNA and RNA samples in batches, but batch effects can obscure true biological signal. We propose using anticlustering as an automated method to assign samples to balanced batches, m…

other 2025
bioRxiv : the preprint server for biology ·doi:10.1101/2025.05.28.656743

INTRODUCTION AND METHODS: Endometriosis has limited treatment options, prompting the search for novel therapeutics. We previously used a transcriptomics-based computational drug repositioning pipeline to analyze public bulk transcriptomic d…

other 2025
medRxiv : the preprint server for health sciences ·doi:10.1101/2025.02.13.25322244

Endometriosis is a prevalent, complex, inflammatory condition associated with a diverse range of symptoms and comorbidities. Despite its substantial burden on patients, population-level studies that explore its comorbid patterns and heterog…

other 2025
Cell reports. Medicine ·doi:10.1016/j.xcrm.2025.102245

Endometriosis is a prevalent, complex, inflammatory condition associated with a diverse range of symptoms and comorbidities. Despite its substantial burden on patients, population-level studies that explore its comorbid patterns and heterog…

review 2025
American journal of obstetrics and gynecology ·doi:10.1016/j.ajog.2024.08.043
review 2025
npj women's health ·doi:10.1038/s44294-024-00052-w

Endometriosis is an enigmatic disease whose diagnosis and management are being transformed through innovative surgical, molecular, and computational technologies. Integrating single-cell and other omic disease data with clinical and surgica…

other 2025
American journal of obstetrics and gynecology ·doi:10.1016/j.ajog.2025.12.047
other 2024
iScience ·doi:10.1016/j.isci.2024.109388

Existing medical treatments for endometriosis-related pain are often ineffective, underscoring the need for new therapeutic strategies. In this study, we applied a computational drug repurposing pipeline to stratified and unstratified disea…

article 2023
·doi:10.1016/j.fertnstert.2023.08.204
article 2023
Communications biology ·doi:10.1038/s42003-023-05070-z

Endometriosis is a leading cause of pain and infertility affecting millions of women globally. Herein, we characterize variation in DNA methylation (DNAm) and its association with menstrual cycle phase, endometriosis, and genetic variants t…

meta-analysis 2023
Nature genetics ·doi:10.1038/s41588-023-01323-z

Endometriosis is a common condition associated with debilitating pelvic pain and infertility. A genome-wide association study meta-analysis, including 60,674 cases and 701,926 controls of European and East Asian descent, identified 42 genom…

article 2023
·doi:10.1016/j.jri.2023.104054
dataset 2022
·doi:10.6084/m9.figshare.19602462

Additional file 1: Table S1. Samples used in the study. Endo: endometriosis; PE: proliferative; SE: secretory: MSE: mid secretory, LSE: late secretory; N/A: not applicable.

dataset 2022
·doi:10.6084/m9.figshare.19602465

Additional file 2: Table S2. CyTOF panels used in the study. Left: broad panel, right: focused panel.

dataset 2022
·doi:10.6084/m9.figshare.19602489

Additional file 9: Table S3. Expression of the significant markers between endometriosis and controls in all cell types in endometriosis versus controls from the focused panel. Significant values are highlighted in grey. Endo: endometriosis…

preprint 2022
·doi:10.1101/2022.12.20.22283736

Abstract Endometriosis is a common, inflammatory pain disorder comprised of disease in the pelvis and abnormal uterine lining and ovarian function that affects ∼200 million women of reproductive age worldwide and up to 50% of those with pel…

article 2022
BMC medicine ·doi:10.1186/s12916-022-02359-4

Abstract Background Endometriosis is a chronic, estrogen-dependent disorder where inflammation contributes to disease-associated symptoms of pelvic pain and infertility. Immune dysfunction includes insufficient immune lesion clearance, a pr…

preprint 2022
·doi:10.1101/2022.02.02.478809

Abstract Background Endometriosis is a chronic, estrogen-dependent disorder where inflammation contributes to disease-associated symptoms of pelvic pain and infertility. Immune dysfunction includes insufficient immune lesion clearance, a pr…

preprint 2022
·doi:10.1101/2022.11.27.518106

Abstract Endometriosis is a leading cause of pain and infertility affecting millions of women globally. Identifying biologic and genetic effects on DNA methylation (DNAm) in endometrium increases understanding of mechanisms that influence g…

article 2022
Reproductive biomedicine online ·doi:10.1016/j.rbmo.2022.05.007

RESEARCH QUESTION: Adenomyosis is a common uterine disorder of uncertain causes. Can transcriptomic analyses of the endometrium and myometrium reveal potential mechanisms underlying adenomyosis pathogenesis? DESIGN: Transcriptomic profiles …

article 2022
Frontiers in immunology ·doi:10.3389/fimmu.2021.788315

The uterine lining (endometrium) exhibits a pro-inflammatory phenotype in women with endometriosis, resulting in pain, infertility, and poor pregnancy outcomes. The full complement of cell types contributing to this phenotype has yet to be …

preprint 2021
·doi:10.1101/2021.08.27.457966

Abstract The uterine lining (endometrium) exhibits a pro-inflammatory phenotype in women with endometriosis, resulting in pain, infertility, and poor pregnancy outcomes. The full complement of cell types contributing to this phenotype has y…

article 2017
·doi:10.1093/biolre/iox107

Uterine fibroids are a common finding in infertility patients. Impaired implantation and decidualization have been proposed to contribute to compromised fertility. Data are limited on the endometrial transcriptome from subjects with uterine…

article 2016
Biology of reproduction ·doi:10.1095/biolreprod.116.140434

Endometriosis is an estrogen-dependent, progesterone-resistant disorder largely derived from retrograde transplantation of menstrual tissue/cells into the pelvis, eliciting an inflammatory response, pelvic pain, and infertility. Eutopic end…

article 2016
Biology of reproduction ·doi:10.1095/biolreprod.115.136010

Human endometrium undergoes cyclic regeneration involving stem/progenitor cells, but the role of resident endometrial mesenchymal stem cells (eMSC) as progenitors of endometrial stromal fibroblasts (eSF) has not been definitively demonstrat…