SLAST: Simple Local Alignment Search Tool

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Abstract

We present a local alignment search tool not based on the usual strategy of seed and grow often employed for these tools. Instead, we just find regions in the database sequences having a high density of seed matches and then we perform a Smith-Waterman local alignment of the query sequence into these regions. This approach has some advantages for some use cases.

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europepmc
last seen: 2026-05-19T01:45:01.086888+00:00