What is the quality of evidence informing vaccine clinical practice recommendations in Australia?

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View ORCID Profile Michael Dymock , View ORCID Profile Julie A Marsh , View ORCID Profile Kevin Murray , View ORCID Profile Thomas L Snelling doi: https://doi.org/10.1101/2025.03.05.25323463 Michael Dymock a School of Population and Global Health, The University of Western Australia , 35 Stirling Highway, Crawley, 6009, Western Australia , Australia b Wesfarmers Centre of Vaccines and Infectious Diseases, The Kids Research Institute Australia, Perth Children’s Hospital, 15 Hospital Avenue , Nedlands, 6009, Western Australia , Australia Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Michael Dymock For correspondence: michael.dymock{at}thekids.org.au Julie A Marsh b Wesfarmers Centre of Vaccines and Infectious Diseases, The Kids Research Institute Australia, Perth Children’s Hospital, 15 Hospital Avenue , Nedlands, 6009, Western Australia , Australia c Centre for Child Health Research, School of Medicine, The University of Western Australia , 35 Stirling Highway, Crawley, 6009, Western Australia , Australia Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Julie A Marsh Kevin Murray a School of Population and Global Health, The University of Western Australia , 35 Stirling Highway, Crawley, 6009, Western Australia , Australia Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Kevin Murray Thomas L Snelling d Sydney School of Public Health, Faculty of Medicine and Health, University of Sydney , Camperdown, 2050, New South Wales, Australia Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Thomas L Snelling Abstract Full Text Info/History Metrics Supplementary material Data/Code Preview PDF Abstract Policy and clinical practice guidelines are dependent on high quality evidence when making vaccine recommendations. A review of the quality of the evidence used to inform vaccine clinical practice guidelines could help guide researchers on how to improve the design of their clinical studies to produce evidence of greater value to decision-makers. In Australia, the Australian Technical Advisory Group on Immunisation (ATAGI) develops evidence-based vaccine clinical practice recommendations using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) methodology, a transparent, systematic and methodical framework for developing and presenting summaries of evidence and its certainty. We summarised the publicly available Australian GRADE assessments for the use of vaccines for prevention of cholera, diphtheria, tetanus and pertussis, human papillomavirus, influenza, meningococcal, pneumococcal, rabies and varicella zoster virus, including the certainty of evidence for each outcome (e.g., effectiveness, immunological or safety outcomes) and overall, in addition to the reasons for downgrade or upgrade of the certainty assessments. Across 25 research questions, 189 separate outcomes were assessed; of these 43 (22.8%), 38 (20.1%), 68 (36.0%) and 40 (21.2%) were classified as informed by very low , low , moderate and high certainty of evidence, respectively. Overall, 4 (16%), 10 (40%), 9 (36%) and 2 (8%) research questions across the disease areas had their overall certainty of evidence classified as very low , low , moderate and high , respectively. Certainty of evidence was downgraded for confounding, uncertainty in the effect estimation, and differences between the research questions asked by ATAGI and those answered in the studies. There is an unmet need to improve the quality of evidence available to vaccine policy-makers. This could be achieved by improvements in the design of vaccine trials, particularly focusing on improving the precision of statistical estimates, inclusion of relevant subpopulations and ensuring trial endpoints are better aligned with the needs of policy-makers. Abbreviations: ACIP, Advisory Committee on Immunization Practices; ATAGI, Australian Technical Advisory Group on Immunisation; COVID-19, coronavirus disease of 2019; DTP, Diphtheria, tetanus and pertussis; GRADE, Grading of Recommendations Assessment, Development and Evaluation; HPV, Human papillomavirus; JCVI, Joint Committee on Vaccination and Immunisation; NCIRS, National Centre for Immunisation Research and Surveillance; NHMRC, National Health and Medical Research Council; PCR, Polymerase chain reaction; PICO, Population, Intervention, Comparator and Outcomes; RCT, Randomised clinical trial; WHO, World Health Organization; Zoster, Varicella zoster virus; 13vPCV, 13-valent pneumococcal vaccine; 15vPCV, 15-valent pneumococcal vaccine; 20vPCV, 20-valent pneumococcal vaccine; 23vPPV, 23- valent pneumococcal polysaccharide vaccine. Introduction Vaccine programs are a central strategy for the prevention of infectious diseases worldwide and are undoubtedly some of the most successful public health interventions of all time, preventing approximately 2.5 million deaths annually [ 1 ]. However, vaccine-preventable diseases evolve and emerge, and novel vaccines and vaccination strategies are developed in response. In order to maintain safe and effective vaccination programs, it is critical that those responsible for making vaccine policy and clinical practice guidelines act promptly to develop and implement evidence-based recommendations. A review of the quality of the evidence relied upon, and identification of the determinants of reduced quality, could help guide researchers, and research funders, on how vaccine studies could be better designed in order to maximise the value of the evidence produced. In Australia, the Australian Technical Advisory Group on Immunisation (ATAGI) develops evidence-based vaccine clinical practice recommendations that are published in the Australian Immunisation Handbook [ 2 ]. ATAGI develops recommendations according to guidelines developed by the National Health and Medical Research Council (NHMRC) [ 3 ] and documents their decision-making processes transparently [ 4 ]. At the core of the NHMRC guidelines lies the Grading of Recommendations Assessment, Development and Evaluation (GRADE) methodology, a transparent, systematic and methodical framework for developing and presenting summaries of evidence and its certainty [ 5 – 8 ]. When a new clinical practice question arises, for example with the licensure of a new vaccine, ATAGI undertakes a GRADE assessment to review and assess the relevant evidence with technical support provided by the National Centre for Immunisation Research and Surveillance (NCIRS) [ 4 ]. The GRADE assessments are made publicly accessible on the NCIRS website [ 9 – 16 ]. Similarly, the Advisory Committee on Immunization Practices (ACIP) and the Joint Committee on Vaccination and Immunisation (JCVI) develop vaccine clinical practice recommendations for the United States of America and the United Kingdom, respectively. ACIP also implements the GRADE methodology as described in the U.S. ACIP Handbook for Developing Evidence-based Recommendations [ 18 ], documents their decision-making processes [ 19 ] and publicly reports their GRADE assessments and corresponding recommendations on their website and the Morbidity and Mortality Weekly Report [ 19 ]. Similarly, since 2008, the World Health Organization (WHO) has used the GRADE approach for the development of their recommendations on immunisation policies [ 20 ]. JCVI publish their recommendations in the Immunisation against Infectious Disease handbook (the "Green Book") [ 17 ] but the process for developing these recommendations is undocumented. The GRADE working group has developed and refined the GRADE methodology since its inception in 2000 and has documented their process in the GRADE Handbook [ 21 ]. The GRADE method allows decision-makers (e.g., policy-makers and guideline developers) to assess the current state of relevant clinical research evidence to inform their decision-making transparently (i.e., guideline or recommendation development). First, the assessors must clearly define the research question. This is typically framed using the PICO (population, intervention, comparator and outcomes) format, a practice well-established in the evidence-based medicine community [ 22 – 23 ]. Next, a systematic review is conducted to identify all relevant clinical studies that may provide evidence to answer the research question. For each outcome specified in the PICO question, evidence is collated across the identified sources and a certainty of evidence grade is systematically determined with the following possible classifications: very low , low , moderate or high [ 21 ]. In general, the default classification for evidence certainty obtained from randomised clinical trials (RCTs) is high , but this may be downgraded for reasons such as risk of bias , inconsistency , indirectness or imprecision , or upgraded due to a large effect magnitude , clear dose-response gradient or reverse residual confounding [ 21 ]. The default classification for evidence certainty obtained from observational studies is low, and this may be downgraded or upgraded for the same reasons. After each outcome has been graded, an overall certainty of evidence grade is assigned for the research question and the assessors proceed with either a strong or weak recommendation for or against the proposed intervention, which is informed by the overall grade. Here we describe and summarise the publicly available GRADE assessments and review the quality of research evidence that has been relied upon to inform vaccine clinical practice recommendations in Australia. We do not comment on the decision-making process followed by ATAGI, nor the recommendations made or the individual GRADE assessments themselves. Instead, we focus on the quality of the evidence used to inform vaccine recommendations in order to determine whether there is a prima facie need to improve evidence quality and, if so, to provide insights into how evidence quality could be improved. We do not concern ourselves with the magnitude or direction of the evidence, nor the subsequent recommendations made by ATAGI. Material and methods We systematically reviewed ATAGI’s publicly accessible GRADE assessments for the use of vaccines across the following disease areas: cholera, diphtheria, tetanus and pertussis (DTP), human papillomavirus (HPV), influenza, meningococcal, pneumococcal, rabies and varicella zoster virus (zoster) [ 9 – 16 ]. All GRADE assessments available on the NCIRS website in July 2024 were included (note that the GRADE methodology was adopted by ATAGI for new or updated recommendations in July 2020; recommendations made prior to this have not been considered). In some instances, multiple GRADE assessments were conducted within a disease area, each answering a different research question. The raw data was collated, stored and analysed in R version 4.4.0 [ 24 ] and is available, in addition to the analysis code, at https://github.com/michaeldymock25/quality-of-evidence . For each GRADE assessment, we recorded the certainty of evidence classification for each outcome and overall, in addition to the reasons for downgrade or upgrade (where applicable). Outcomes containing the search string “adverse events|fever|pain|fatigue|cardiovascular” were categorised as safety outcomes, otherwise they were categorised as efficacy outcomes. Research questions containing the search strings “infants”, “children aged 2-17”, “children and adults”, “adolescents”, “over 18”, “over 50|over 65|over 70” were categorised into age groups infants , children and adolescents , children and adults , adolescents , adults and older adults , respectively. Similarly, research questions containing the search strings “standard risk|without underlying risk|immunocompetent” and “increased risk|with underlying risk|immunocompromised|high risk of exposure|indicated to receive rabies pre-exposure” were categorised into population risk groups standard risk of disease and increased risk of disease , respectively. Finally, research questions containing the search strings “non- indigenous” and “indigenous” were categorised into Indigenous status groups non-Indigenous and Indigenous , respectively. Research questions that were indifferent to age, population risk or ethnicity were excluded from the age group, population risk group and Indigenous status group analyses, respectively. Results are summarised as counts and percentages and visualised as bar and line charts. Results GRADE assessments for 25 research questions across 8 diseases were reviewed. Details on the individual PICO questions and the outcomes assessed are provided in Table 1 and Table 2 , respectively. The GRADE assessments within the cholera, DTP, HPV, meningococcal, pneumococcal and rabies disease areas were each initiated following (or in anticipation of) approvals or recommendations of new vaccines and/or schedules by the Therapeutic Goods Administration, WHO, ACIP or the Pharmaceutical Benefits Advisory Committee within the respective disease areas. The reasons for initiating GRADE assessments for influenza and zoster vaccines were not stated. The GRADE assessments considered the most up to date clinical research evidence where most of the studies included were published within the last decade. View this table: View inline View popup Table 1 Research questions considered for each disease area. Each research question corresponds to a separate GRADE assessment. Questions have been phrased to make the populations, interventions and comparators clear. View this table: View inline View popup Table 2 Summary of outcomes used in the GRADE assessments by disease area. Outcome summaries apply to all research questions (GRADE assessments) within a disease area noting that individual assessments may have considered more specific definitions (e.g., included a time window for outcome ascertainment). Across the 25 research questions, 189 separate outcomes were assessed using the eligible studies; of these outcomes, 43 (22.8%), 38 (20.1%), 68 (36.0%) and 40 (21.2%) were classified as being informed by very low , low , moderate and high certainty of evidence, respectively. Figure 1 displays the breakdown of certainty of evidence classifications for the outcomes across each research question within each disease area. The certainty of evidence varied across disease areas. Cholera, DTP and HPV assessments were informed by moderate or high certainty evidence only. Download figure Open in new tab Figure 1 GRADE certainty of evidence classifications for individual outcomes by research question within disease area. Research question labels correspond to the labels found in Table 1 . Meningococcal assessments were informed by very low or low certainty evidence. Influenza, pneumococcal, rabies and zoster assessments were informed by evidence across the range of certainty classifications. Figure 2 shows similar variation between the certainty of evidence classifications across disease areas when the outcomes are categorised into efficacy (109 outcomes) and safety (80 outcomes). Overall, 4 (16%), 10 (40%), 9 (36%) and 2 (8%) research questions across the disease areas had their overall certainty of evidence classified as very low , low , moderate and high , respectively. The distribution of overall certainty of evidence classifications varied across disease areas but did not appear to vary according to the research questions’ focus on age, population risk or Indigenous status ( Table 1 ). Download figure Open in new tab Figure 2 GRADE certainty of evidence classifications for individual outcomes by outcome category (efficacy or safety) within disease area. Of the 79 (41.8%) outcomes that had their certainty of evidence downgraded due to risk of bias, the most common reasons were potential confounding (28; 35.4%), single arm studies (24; 30.4%) and selective outcome reporting (7; 8.9%). There were 9 (4.8%) outcomes with downgraded certainty of evidence for inconsistency due to variability in the results between studies (6; 66.7%) or wide prediction intervals (3; 33.3%); inconsistency was not assessed for 48 (25.4%) outcomes due to only one study being included in the comparison. Of the 70 (37.0%) outcomes with downgraded certainty of evidence for indirectness, most reasons were related to differences between the populations included in the studies and the population defined in the research question (38; 54.3%) and/or differences between other study elements (e.g. intervention or comparator schedule) and those defined in the research question (34; 48.6%), although there could be multiple reasons for downgrading. Finally, there were 81 (42.9%) outcomes with downgraded certainty of evidence for imprecision due to small sample sizes (29; 35.8%), wide confidence intervals or “statistically non-significant” results (23; 28.4%), a low number of events (22; 27.2%) or the studies being underpowered (7; 8.6%). Figure 3 displays the number of levels each outcome was downgraded for each assessment category (risk of bias, inconsistency, indirectness or imprecision) for each disease area. Figures S1-S6 in the Supplementary Materials show how each outcome was downgraded for each assessment category and each research question for each disease area (excluding cholera and DTP as each of these disease areas only have one research question). Download figure Open in new tab Figure 3 Certainty of evidence classification for each outcome across each assessment category within each disease area. Outcomes classified High, Moderate, Low and Very Low have been downgraded zero, one, two and three or more levels, respectively. There were 6 outcomes where the certainty of evidence classification was upgraded due to a large effect magnitude. However, for one of the outcomes, risk of bias, inconsistency, indirectness and imprecision were all graded serious and so the certainty of evidence was classified very low even after accounting for the large effect magnitude. The large effect magnitude for the other 5 outcomes similarly had no impact as the certainty of evidence was already classified as high . Discussion In this review, we found that around half (56%) of the GRADE assessments informing Australian vaccine practice guidelines received an overall certainty of evidence classification of low or very low , which likely impacts upon ATAGI’s ability to develop evidence-based recommendations. Reasons for downgrading the certainty of evidence for individual outcomes included potential for confounding, mismatch between the question-specific versus the study-specific population and design (e.g., interventions and schedules), and uncertainty in the effect estimation (e.g., wide confidence intervals, a low number of events or concerns regarding statistical significance). While it is always preferable to base policy and practice recommendations on higher rather than lower certainty of evidence, we note that it is neither necessary nor desirable for clinical practice to always be guided by the highest certainty of evidence. The cost to generate evidence via research must be proportionate to the value of the information gained. Where the risks of vaccination are small, having high precision on the size of the protective effect may be unnecessary. Also, for some vaccine-preventable conditions like meningococcal disease, the rarity of infection makes it infeasible to undertake definitive trials that directly measure the effect of vaccines against infection, so it may be necessary to instead base recommendations on immune responses or other indirect evidence. Nonetheless, our review indicates that there are still likely to be opportunities to improve the certainty of evidence informing vaccine recommendations, for example by designing studies that are more inclusive of subpopulations, that are inclusive of vaccine schedules under programmatic consideration (including dose-sparing schedules), and that consider the cost-effectiveness of vaccine strategies and provide granular probabilistic outputs to assist decision-making. The use of contemporary methods to minimise confounding and selection bias in the analysis of observational data, in conjunction with improved standards of reporting, should also be considered by researchers to improve the quality of evidence available for GRADE assessments. GRADE assessments are now used routinely to guide vaccine clinical practice recommendations in Australia and USA. GRADE has also been used to assess the certainty of evidence for COVID-19 vaccine uptake by ethnic minority individuals in the United Kingdom [ 25 ], risk management of allergic reactions to COVID-19 vaccines [ 26 – 27 ], use of the two-dose varicella vaccine in China [ 28 ], strategies for addressing vaccine hesitancy [ 29 ], and vaccination against rotavirus [ 30 ] and hepatitis B [ 31 ] in Germany. While the intended purpose of GRADE is to guide the translation of evidence into recommendations, in this review we have utilised it instead to identify potential limitations of the evidence used to inform vaccine recommendations, and to identify opportunities for researchers to improve the quality of evidence relied upon. With increased adoption of the GRADE methodology, there are efforts to expand and improve the GRADE approach. Guidance developed by the GRADE Public Health Group [ 32 ] addresses the remaining limitations in using GRADE to develop vaccine clinical practice recommendations, such as the prioritisation of outcomes and inclusion of perspectives from diverse stakeholders. One challenge that assessors face, especially when asking questions where evidence is scarce (e.g., for rare populations), is a lack of any high-quality evidence. Although GRADE does allow for the consideration of lower quality observational research evidence in situations where RCTs are unfeasible or unavailable, such as post- marketing vaccine safety surveillance evidence generated by AusVaxSafety [ 33 ], it may be impossible to (fully) alleviate bias in the available evidence, let alone quantify its magnitude. In this manuscript we presented descriptive summaries of the GRADE assessments that have been used by ATAGI to develop new and updated vaccine clinical practice recommendations in Australia from July 2020 to July 2024. Due to this time period restriction, bias in the selection of assessments considered in this work cannot be evaluated and so we avoid making broad generalised interpretations of the results. We do not attempt to interpret the comparisons of evidence certainty across disease areas and populations as these may be disproportionately affected by external factors such as the feasibility of research and acknowledge this as a limitation. Furthermore, we acknowledge that the certainty of evidence classifications, although crucial, are not the only component of the evidence-to-decision framework used by ATAGI when making vaccine clinical practice recommendations. The priority of the research question, acceptability to stakeholders and feasibility are other important factors considered [ 3 ]. Clinical research should aim to impact and inform policy and practice, either directly by addressing policy-specific questions, or indirectly by contributing to an evolving evidence base. It stands to reason that research (in particular research that is publicly funded) should be designed to answer the research questions of policy-makers most efficiently. In the context of vaccine clinical practice recommendations, researchers must consider how to improve the quality of evidence used by policy-makers. Acknowledging that clinical research is subject to external constraints from limitations in funding and recruitment, it will be difficult to completely remedy all issues related to potential for bias and uncertainty reduction in estimation. One way to improve the quality of evidence which may have few or no resource implications, would be to better align future studies with policy questions. However, this would require policy-makers to be involved in setting research questions before the evidence is generated, rather than afterwards. Author contributions MD drafted the primary version of this manuscript, conducted the data curation and investigation and developed the software and visualisation. JM, KM and TS assisted with the study conceptualisation, reviewed and edited the manuscript and provided supervision for MD. All authors attest they reviewed and approved the final version for publication and met the ICMJE criteria for authorship. Declaration of competing interests TS was formerly a member of the Australian Technical Advisory Group on Immunisation (ATAGI) which advises the Australian Government on vaccine policy. The other authors declare that they have no competing interests. Data Availability All data used in this work are available online at https://github.com/michaeldymock25/quality-of-evidence. https://github.com/michaeldymock25/quality-of-evidence Role of funding source Funders who supported this research had no role in the study design, data collection, analysis, interpretation, writing of this manuscript or decision to submit for publication. Acknowledgements The authors express their gratitude to Clayton Chiu and Zhicheng (Jeff) Wang for their extensive comments on the draft manuscript. MD is supported by a NHMRC Postgraduate Research Award (GNT2022557), an AusTriM Postgraduate Top-up Scholarship, a Stan and Jean Perron Top-up Scholarship and a Statistical Society of Australia PhD Top-up Scholarship. TS is supported by a MRFF Investigator Grant (MRF1195153). References [1]. ↵ World Health Organization, UNICEF and World Bank. State of the world’s vaccines and immunization (3rd edition). 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