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regulated synthesis of target proteins was analyzed using autoradiography and
Western blot techniques. Platelets from patients with HIV+ were examined in
parallel. RESULTS/ANTICIPATED RESULTS: We identified that highly puri fied,
isolated platelets from healthy subjects possess eRT activity. eRT activity was
blocked with the non-nucleoside RT inhibitor nevirapine at concentrations within
the therapeutic drug range. L1 elements are bicistronic, containing 2 open reading
frames (ORFs), ORF1 and ORF2. Thus, we next identi fied that human platelets
express full-length L1 mRNA containing ORF1 and ORF2. In human platelets, eRT
activity was localized to L1 protein containing ribonucleo particles. Platelet eRT
reverse transcribed exogenous RNAs, a process inhibited by nevirapine, acting in
trans using the 3 ′-UTR of exogenous mRNAs as a template. To dissect the
function of eRT in platelets, we next examined cytoskeletal and protein synthetic
events in the presence or absence of nevirapine. Inhibition of eRT in isolated
platelets led to characteristically beaded platelets in appearance, strongly
resembling bone marrow proplatelets. Parallel increases in platelet reactivity
were also observed. As these changes occurred over hours, not minutes, we
hypothesized that inhibition of eRT would affect platelet protein synthetic events.
Consistent with this, RT inhibition resultedin upregulation of global platelet protein
synthesis. We validated upregulation of the synthesis of specific proteins (mitofilin,
p-selectin, and L26—a component of the 60S ribosomal subunit essential for mRNA
translation). RNA-DNA hybrids, noncanonical nucleic acid structures that regulate
gene expression, are enriched in regions where L1 is abundant. RNA-DNA hybrids
were present in platelets and expression confirmed via differential digestion of RNAs
( e g ,w i t hR N a s eAa n dR N A s eI ) .N e x t - g e n e r a t i o ns e q u e n c i n go fp u l l e dd o w n( e g ,
immunoprecipitated) platelet RNA-DNA hybrids identified numerous differentially
expressed transcripts and we focused on MAP1LC3B (LC3B), a primary regulator of
autophagy. Hybrid sequencing results for LC3B were validated using qPCR and we
confirmed that LC3B RNA binds to L1-encoded RNA binding protein. Platelets
treated with nevirapine had increased total LC3B protein expression. As RT
inhibition is an important mechanism to control HIV infection, we examined platelet
morphology, activation, and LC3B expr ession in platelets from HIV + subjects
treated with nevirapine. HIV + patients treated with RT inhibitors had higher
numbers of platelets that were beaded in appearance at baseline, increased platelet
reactivity, and differential LC3B expr ession compared with healthy controls.
DISCUSSION/SIGNIFICANCE OF IMPACT: Taken together, these results
demonstrate that platelets possess eRT activity that regulates platelet morphology,
platelet hyperreactivity, and protein synthetic events. We postulate that eRT activity
in platelets may be a new post-transcriptional regulatory checkpoint. Moreover, our
findings have implications in HIV + patients treated with RT inhibitors, where off-
target effects may contribute to platelet activation and an increased risk of
thrombosis.
2114
The role of estrogen receptor- β in the development of
the early endometriotic lesion
Jennifer Knudtson, Ya-Guang Liu, Marlen Tellez Santos,
Rajeshwar Tekmal, Ratna Vadlamudi and Robert Schenken
OBJECTIVES/SPECIFIC AIMS: To further elucidate the role of estrogen
receptor β (ER-β) in the early endometriotic lesion attachment. METHODS/
STUDY POPULATION: EECs were immortalized using a telomerase vector.
Immortalized cells and parental cells were characterized by genotyping, and
expression of ER- β as well as other epithelial cell markers. ER- β was knocked-
down in immortalized EECs using lentivirus-mediated shRNA transduction. ER-
β knockdown was confirmed by RT-qPCR and Western analysis. EEC cells with
or without ER- β knockdown were used to assess their attachment to PMCs in
an established in vitro assay (Lucidi, 2005). Results were analyzed with Student
t-test. RESULTS/ANTICIPATED RESULTS: Genotyping using karyotype assay
confirmed a normal chromosomal profile. Also positive staining for cytokeratin
and lack of any staining with vimentin confirms the epithelial origin of these cells.
ER-β knockdown has a signi ficant decrease in attachment compared to control
(p = 0.02). DISCUSSION/SIGNIFICANCE OF IMPACT: Primary and immorta-
lized cells were 46XX, cytokeratin positive, and vimentin negative con firming
their epithelial origin. ER- β knockdown has a signi ficant decrease in attachment
compared with control.
2136
Gut microbiome alterations in children undergoing
hematopoietic stem cell transplantation
Muna Qayed, Dalia Arafat, Samridhi Banskota, John Horan,
Edmund Waller and Gregory Gibson
OBJECTIVES/SPECIFIC AIMS: Aim 1: To compare microbiome diversity
among patients who develop BSI post hematopoietic stem cell transplantation
(HSCT) and patients without BSI. Aim 2: To compare microbiome
diversity among patients who develop moderate to severe acute GVHD post
HSCT and patients without GVHD. Aim 3: To describe alterations in speci fic
bacterial orders (Enterobacteriaceae, Clostridia, and Lactobacillales) in
pediatric patients undergoing HSCT. METHODS/STUDY POPULATION:
Next-generation sequencing of the hypervariable V3 region of the 16s rRNA
gene isolated from stool specimens collected at baseline (start of preparative
regimen to transplant day), early (day 7 –14 post HSCT), and late (day 21 –28
post HSCT) from 46 children was performed. Microbiome diversity was
assessed by the Shannon index as well as UniFrac analysis, and compared among
patients with and without GVHD/BSI. Baseline bacterial diversity was compared
among patients by primary diagnosis, race, timing of antibiotic introduction and
method of supplemental nutrition. RESULTS/ANTICIPATED RESULTS: Median
age was 9 years (range 0.5 –19.2 years). There were 36 patients with
hematologic malignancies. Patients with nonmalignant disease had a character-
istic pattern of microbiome diversity (and microbiota order distribution) at
baseline that persisted throughout the first month of transplant ( p = 0.004).
Over all patients, there was an early and persistent drop in microbiome
diversity throughout the transplant course. Early introduction of broad
spectrum antibiotics (prior to transplant day) negatively impacted microbiome
diversity ( p = 0.02). There was no difference in microbiome diversity among
patients who developed BSI, when compared with patients without BSI.
Similarly, we did not find an association between microbiome diversity and the
development of moderate to severe acute GVHD. Ongoing analysis is
examining the individual variations in microbiome at the species level, and
their relation to transplant characteristics and clinical outcomes. DISCUSSION/
SIGNIFICANCE OF IMPACT: In our analysis, microbiome diversity decreased
during HSCT, but in contrast to published data, mainly in adult HSCT
populations, we found no association between gut microbiome diversity and
GVHD or BSI. There are ongoing clinical trials in children and adults using
probiotics in HSCT with the aim of decreasing GVHD. Further analysis of our
data at the species level may further inform the relationship between gut
microbiome alterations and HSCT complications in children and guide clinical
interventions.
2139
PBX1 mRNA expression is a prognostic biomarker of
and clinical indicator by RT-qPCR and RNAScope ®
in situ hybridization in neuroblastoma
Nilay Shah and Julia Selich-Anderson
The Ohio State University, Columbus, OH, USA
OBJECTIVES/SPECIFIC AIMS: (1) Correlate PBX1 mRNA expression as
measured by RNAScope in situ hybridization, at an RNA number/cell
measurement, Versus by RT-qPCR by the ddCt method. (2) Validate PBX1
mRNA expression in a second independent cohort of neuroblastoma tumor
samples, and correlate with patient outcomes. We expect that PBX1
expression will correlate whether detected by RNAScope or by RT-qPCR.
This work has the promise of validating a novel biomarker of disease severity,
and for clinical translation as the RNAscope technology has been CLIA-certified
for clinical use for other genes. METHODS/STUDY POPULATION: Primary
neuroblastoma tumor samples were acquired through the Children’s Oncology
Group Tumor Bank, The Cooperative Human Tissue Network Tumor bank,
and the Westmeade Tumor Bank (Westmeade, Australia), with patient
outcomes annotated but sequestered until experiments are completed. RT-
qPCR is performed using 1 μg total RNA isolated from each sample by
Nucleospin RNA kit (Clontech), reverse transcribed by SuperScript VILO
(ThermoFisher Scientific) and ampli fied using KiCqSTART SYBR Green qPCR
mix (Sigma Aldrich). RNAScope was performed on sections of fresh frozen
tumor, in triplicate, per manufacturer protocol (ACDBio) using company-
designed probes. Statistical analyses performed using GraphPad Prism5.
RESULTS/ANTICIPATED RESULTS: PBX1 mRNA expression as measured
RNAScope correlated well with matched RT-qPCR values, with most PBX1
transcripts identi fied within the malignant cells and not in tumor stroma.
Correlation with patient outcomes is ongoing (expected to be available at the
time of presentation), but as the RNAScope values correlate with R > 0.9 with
RT-qPCR values, we expect good correlation with outcomes in our primary
data set and matching validation set. DISCUSSION/SIGNIFICANCE OF
IMPACT: PBX1 mRNA expression is an accurate prognostic biomarker of
outcome in low and intermediate-risk neuroblastoma, and testing on an
additional validation set is planned based on thresholds established by
RNAScope. RNAScope is a method readily translatable to clinical use and its
inclusion in future clinical trials will be further studied. It provides an additional
benefit that concomitant immunohistochemistry can also be performed.
Analysis of high-risk neuroblastomas for responsiveness to retinoic acid based
on PBX1 expression is planned.
cambridge.org/jcts 57
https://doi.org/10.1017/cts.2017.203 Published online by Cambridge University Press
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