A novel distinct genetic variant of tomato torrado virus with substantially shorter RNA1-specific 3'untranslated region (3'UTR)

Abstract Tomato torrado virus (ToTV) induces severe systemic necrosis in Solanum lycopersicum. This work aimed at describing the genetic variability of necrosis-inducing ToTV-Wal'17 collected in the 2017 year, derived from the ToTV-Wal'03 after long-term passages in plant. Sequence analyses of the ToTV-Wal`17 indicated twenty-eight single nucleotide substitutions in coding sequence of both RNAs, twelve of which resulted in amino acid changes in viral polyproteins. Moreover the sequencing data revealed that the 3'UTR of ToTV-Wal'17 RNA1 was 394 nts shorter in comparison to Wal'03. The performed sequence analyses pointed that 3'UTR of RNA1of ToTV-Wal'17 is the most divergent across all previously described European isolates.