Genotype-specific expression of selected candidate genes conferring resistance to leaf rust of rye (Secale cereale L.)

Abstract Leaf rust (LR) caused by Puccinia recondita f. sp. secalis ( Prs ) is a highly destructive disease in rye. However, the genetic mechanisms underlying the rye immune response to this disease remain relatively uncharacterised. In this study, we analysed the expression of four genes in 12 rye inbred lines inoculated with a Prs at 20 and 36 h post-treatment (hpt): DXS (1-deoxy-D-xylulose 5-phosphate synthase), Glu (beta-1,3-glucanase), GT (UDP-glycosyltransferase) and PR-1 (pathogenesis-related protein 1). The RT-qPCR analysis revealed the up-regulated expression of the four genes in response to Prs in all inbred lines and at both time-points. The gene expression data were supported by the microscopic and macroscopic examination, which revealed that eight lines were susceptible to LR, and four lines were highly resistant to LR. A relationship between the infection profiles and the expression of the analysed genes was observed: in the resistant lines, the expression level fold-changes were usually higher at 20 hpt than at 36 hpt, while the opposite trend was observed in the susceptible lines. The study results indicate that DXS , Glu , GT and PR-1 may encode proteins crucial for the rye defence response to the LR pathogen.