Interpretable Machine Learning Framework for Geochemical Classification: Advancing Mineral and Geothermal Resource Assessment

preprint OA: closed
Full text JSON View at publisher
Full text 11,191 characters · extracted from preprint-html · click to expand
Interpretable Machine Learning Framework for Geochemical Classification: Advancing Mineral and Geothermal Resource Assessment | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Research Article Interpretable Machine Learning Framework for Geochemical Classification: Advancing Mineral and Geothermal Resource Assessment Thien Thuan Huynh, Quoc Lap Nguyen This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-8062402/v1 This work is licensed under a CC BY 4.0 License Status: Posted Version 1 posted You are reading this latest preprint version Abstract Accurate lithological classification from geochemical data is fundamental to quantitative resource exploration, evaluation, and risk reduction. This study develops an explainable ensemble learning framework that integrates Random Forest, XGBoost, CatBoost, and Multi-Layer Perceptron models to classify 3,868 igneous rock samples using major oxide compositions. The CatBoost model achieved the highest performance with 89.9% accuracy and 85.7% F1-macro score, outperforming other optimized models. Explainability analysis using SHAP (SHapley Additive exPlanations) quantitatively validated model outputs against petrological theory: SiO2 emerged as the dominant discriminator (importance: 1.026), followed by CaO and MgO, accurately reflecting magmatic differentiation processes. The framework integrates prediction confidence to quantify geological uncertainty in resource assessment contexts. This approach enhances efficiency in mineral and geothermal resource evaluation by enabling rapid, interpretable geochemical classification that supports subsurface mapping and reduces exploration uncertainty. With sub-second inference times, the framework provides operational feasibility for field deployment in exploration programs. By bridging machine learning outputs with geological understanding, this work advances quantitative resource geoscience through transparent, high-accuracy classification suitable for mineral prospectivity mapping, geothermal reservoir characterization, and exploration risk assessment. Geochemistry Artificial Intelligence and Machine Learning Rock classification Geochemistry Machine learning Explainable AI Quantitative geoscience Mineral prospectivity Full Text Additional Declarations The authors declare no competing interests. Cite Share Download PDF Status: Posted Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-8062402","acceptedTermsAndConditions":true,"allowDirectSubmit":true,"archivedVersions":[],"articleType":"Research Article","associatedPublications":[],"authors":[{"id":541867003,"identity":"bda54191-f947-44fd-bac0-42394b2edb3a","order_by":0,"name":"Thien Thuan Huynh","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAABCElEQVRIie3PMUvDQBTA8XccXJYnXS9U6ld4EKiIQ79KRDBL5+IgmKkuRdeC+B38Bl55EJfSWbFDpNCpg5N0UPFdi0tJ2o4O94fwjiS/uwQgFPqHEYDxs9WIcuVk4vq+2UKMXj1N4oEDIQnivuTs8SVdEdhJjo/uihleTVX+OivdEuiwY7MSPnoM9JZXkpO+jhIs5lrdX9BoAIRou6SGEyFTV/1hhTZNNGx0swsM8OUJ6IM+QzxMt5AfRhOPPfGnZKX+3kVkT4sW/0hKWglp2Dpy3o4fbpks+n8hIeOFLCYZ1hIeze3ik6+fnvm9XF5SJ7rJZNE7bZkasrnDeji5cJ/3Q6FQKFTdLyBoVPsprRrwAAAAAElFTkSuQmCC","orcid":"https://orcid.org/0009-0008-0363-8321","institution":"","correspondingAuthor":true,"prefix":"","firstName":"Thien","middleName":"Thuan","lastName":"Huynh","suffix":""},{"id":541867004,"identity":"6f35fd19-647c-42d2-a89b-4768a272f922","order_by":1,"name":"Quoc Lap Nguyen","email":"","orcid":"https://orcid.org/0009-0002-3316-686X","institution":"","correspondingAuthor":false,"prefix":"","firstName":"Quoc","middleName":"Lap","lastName":"Nguyen","suffix":""}],"badges":[],"createdAt":"2025-11-08 08:07:42","currentVersionCode":1,"declarations":{"humanSubjects":false,"vertebrateSubjects":true,"conflictsOfInterestStatement":false,"humanSubjectEthicalGuidelines":false,"humanSubjectConsent":false,"humanSubjectClinicalTrial":false,"humanSubjectCaseReport":false,"vertebrateSubjectEthicalGuidelines":true},"doi":"10.21203/rs.3.rs-8062402/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-8062402/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":95656040,"identity":"686a2d50-1648-4cf6-96be-3a5c4a3093b7","added_by":"auto","created_at":"2025-11-11 16:17:39","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":641074,"visible":true,"origin":"","legend":"","description":"","filename":"natureresourceresearch.pdf","url":"https://assets-eu.researchsquare.com/files/rs-8062402/v1_covered_2df48cd9-acc0-4422-bdcc-2d51c995520a.pdf"}],"financialInterests":"The authors declare no competing interests.","formattedTitle":"\u003cp\u003eInterpretable Machine Learning Framework for Geochemical Classification: Advancing Mineral and Geothermal Resource Assessment\u003c/p\u003e","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":true,"highlight":"","institution":"University of Science, Vietnam National University Ho Chi Minh City","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true},"keywords":"Rock classification, Geochemistry, Machine learning, Explainable AI, Quantitative geoscience, Mineral prospectivity","lastPublishedDoi":"10.21203/rs.3.rs-8062402/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-8062402/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003eAccurate lithological classification from geochemical data is fundamental to quantitative resource exploration, evaluation, and risk reduction. This study develops an explainable ensemble learning framework that integrates Random Forest, XGBoost, CatBoost, and Multi-Layer Perceptron models to classify 3,868 igneous rock samples using major oxide compositions. The CatBoost model achieved the highest performance with 89.9% accuracy and 85.7% F1-macro score, outperforming other optimized models. Explainability analysis using SHAP (SHapley Additive exPlanations) quantitatively validated model outputs against petrological theory: SiO2 emerged as the dominant discriminator (importance: 1.026), followed by CaO and MgO, accurately reflecting magmatic differentiation processes. The framework integrates prediction confidence to quantify geological uncertainty in resource assessment contexts. This approach enhances efficiency in mineral and geothermal resource evaluation by enabling rapid, interpretable geochemical classification that supports subsurface mapping and reduces exploration uncertainty. With sub-second inference times, the framework provides operational feasibility for field deployment in exploration programs. By bridging machine learning outputs with geological understanding, this work advances quantitative resource geoscience through transparent, high-accuracy classification suitable for mineral prospectivity mapping, geothermal reservoir characterization, and exploration risk assessment.\u003c/p\u003e","manuscriptTitle":"Interpretable Machine Learning Framework for Geochemical Classification: Advancing Mineral and Geothermal Resource Assessment","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2025-11-10 17:07:04","doi":"10.21203/rs.3.rs-8062402/v1","editorialEvents":[{"type":"communityComments","content":0}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"10a13715-d690-49be-a87b-af16af119763","owner":[],"postedDate":"November 10th, 2025","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"posted","subjectAreas":[{"id":57650613,"name":"Geochemistry"},{"id":57650614,"name":"Artificial Intelligence and Machine Learning"}],"tags":[],"updatedAt":"2025-11-10T17:07:04+00:00","versionOfRecord":[],"versionCreatedAt":"2025-11-10 17:07:04","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-8062402","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-8062402","identity":"rs-8062402","version":["v1"]},"buildId":"8U1c8b4HqxoKbykW_rLl7","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2025) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00