Measuring the Latent Tuberculosis Infection Care Cascade Using Electronic Health Record Data from Primary Care Clinics in the Tuberculosis Epidemiologic Studies Consortium-III

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This longitudinal study used patient-level electronic health record data from primary care clinics in the Tuberculosis Epidemiologic Studies Consortium-III to characterize outcomes across the latent TB infection (LTBI) care cascade among persons at higher risk of TB infection, defined mainly by non–US birth (or non-English preference if birth was unknown). Across four sites, of 3.5 million people seeking care, 48% met the higher-risk definition and 69% of those were cascade eligible (no prior LTBI/TB testing, diagnosis, or treatment documented); among cascade eligible individuals, 14% were tested, 17% of tests were positive, and 61% of those diagnosed were prescribed treatment, with 87% starting and 56% completing treatment. A key limitation is that eligibility and cascade steps rely on what was documented in EHRs, so missing or external care could misclassify stages. This paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

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Abstract

Importance Tuberculosis (TB) was the leading infectious cause of death worldwide in 2023. Most US TB cases represent reactivation of latent TB infection (LTBI). Because LTBI treatment is approximately 90% effective for preventing TB disease, LTBI screening and treatment are primary strategies for US TB elimination. The Tuberculosis Epidemiologic Studies Consortium-III (TBESC-III) supports US TB elimination efforts by addressing LTBI among individuals at higher risk of infection seeking care in US primary care clinics. Objective To characterize and measure outcomes across a longitudinal LTBI care cascade, from proportion of persons at higher risk through testing, diagnosis, and treatment. Design Longitudinal study using patient-level electronic health record (EHR) data. Setting Primary care clinics serving at least 10,000 non–US-born individuals annually from countries with high TB disease incidence rates (defined as ≥10 cases per 100,000 persons among expatriates living in the US). Participants Persons at higher risk of TB infection, defined as non-US birth or, if unknown, a non-English language preference, who had a visit during the study period at a participating clinic. Intervention(s) (for clinical trials) or Exposure(s) (for observational studies) Not relevant Main Outcome(s) and Measure(s) Among participants without prior TB or LTBI testing, diagnosis, or treatment documented (ie, cascade eligible), we determined proportions: tested for TB infection, with available test results, with positive results, chest imaging ordered, LTBI diagnoses, and with LTBI treatment prescribed, started, and completed. Percentages were averaged across four sites representing multiple clinics. Results Of 3.5 million persons seeking care, on average, 48% were at higher risk of TB infection, and 69% of these were cascade eligible. Among cascade eligible individuals, 14% were tested; 92% of those tested had available results, with 17% testing positive. Of those testing positive, 82% underwent chest imaging; 70% met LTBI diagnostic criteria. Among those diagnosed, 61% were prescribed treatment; 87% started treatment, with 56% completing treatment. Conclusions and Relevance Although an average of 17% of participants tested had TB infection, most (average, 86%) higher-risk individuals were not tested; an average of 39% of those diagnosed were not prescribed treatment, and nearly half (average, 44%) did not complete treatment. Targeted interventions to increase LTBI testing and treatment completion among higher-risk individuals could facilitate more preventive treatment and reductions in TB-associated morbidity.
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Vonnahme , View ORCID Profile Preeti Ravindhran , View ORCID Profile Julie Espey , Bhumika Sharma , Taylor Moore , View ORCID Profile Kaylynn Aiona , View ORCID Profile Jacek Skarbinski , View ORCID Profile Masahiro Narita , View ORCID Profile Priya B. Shete , Jagadheeswari Adhimurthy , View ORCID Profile Richard Broadhurst , View ORCID Profile Paul Wada , View ORCID Profile Grace Bond , View ORCID Profile Matthew T. Murrill , Kuan-Chieh Huang , Meagan Lee , Jihming Lin , View ORCID Profile Kathryn Winglee , the Tuberculosis Epidemiologic Studies Consortium doi: https://doi.org/10.1101/2025.08.25.25333908 Laura A. Vonnahme 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia PhD, MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Laura A. Vonnahme For correspondence: kdy1{at}cdc.gov Preeti Ravindhran 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Preeti Ravindhran Julie Espey 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Julie Espey Bhumika Sharma 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia 2 Peraton, Inc. , Reston, Virginia MBA Find this author on Google Scholar Find this author on PubMed Search for this author on this site Taylor Moore 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia 2 Peraton, Inc. , Reston, Virginia MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site Kaylynn Aiona 3 Denver Health and Hospital Authority , Colorado PhD, MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Kaylynn Aiona Jacek Skarbinski 4 Kaiser Permanente Northern California , Oakland MD Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Jacek Skarbinski Masahiro Narita 5 Public Health Seattle and King County , Seattle 6 University of Washington , Seattle MD Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Masahiro Narita Priya B. Shete 7 University of California , San Francisco MD, MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Priya B. Shete Jagadheeswari Adhimurthy 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia 2 Peraton, Inc. , Reston, Virginia MS Find this author on Google Scholar Find this author on PubMed Search for this author on this site Richard Broadhurst 3 Denver Health and Hospital Authority , Colorado MD, MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Richard Broadhurst Paul Wada 4 Kaiser Permanente Northern California , Oakland MD Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Paul Wada Grace Bond 5 Public Health Seattle and King County , Seattle MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Grace Bond Matthew T. Murrill 7 University of California , San Francisco MD, PhD Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Matthew T. Murrill Kuan-Chieh Huang 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia 2 Peraton, Inc. , Reston, Virginia BS Find this author on Google Scholar Find this author on PubMed Search for this author on this site Meagan Lee 7 University of California , San Francisco MPH Find this author on Google Scholar Find this author on PubMed Search for this author on this site Jihming Lin 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia 2 Peraton, Inc. , Reston, Virginia MS Find this author on Google Scholar Find this author on PubMed Search for this author on this site Kathryn Winglee 1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention , Atlanta, Georgia PhD Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Kathryn Winglee Abstract Full Text Info/History Metrics Supplementary material Data/Code Preview PDF Abstract Importance Tuberculosis (TB) was the leading infectious cause of death worldwide in 2023. Most US TB cases represent reactivation of latent TB infection (LTBI). Because LTBI treatment is approximately 90% effective for preventing TB disease, LTBI screening and treatment are primary strategies for US TB elimination. The Tuberculosis Epidemiologic Studies Consortium-III (TBESC-III) supports US TB elimination efforts by addressing LTBI among individuals at higher risk of infection seeking care in US primary care clinics. Objective To characterize and measure outcomes across a longitudinal LTBI care cascade, from proportion of persons at higher risk through testing, diagnosis, and treatment. Design Longitudinal study using patient-level electronic health record (EHR) data. Setting Primary care clinics serving at least 10,000 non–US-born individuals annually from countries with high TB disease incidence rates (defined as ≥10 cases per 100,000 persons among expatriates living in the US). Participants Persons at higher risk of TB infection, defined as non-US birth or, if unknown, a non-English language preference, who had a visit during the study period at a participating clinic. Intervention(s) (for clinical trials) or Exposure(s) (for observational studies) Not relevant Main Outcome(s) and Measure(s) Among participants without prior TB or LTBI testing, diagnosis, or treatment documented (ie, cascade eligible), we determined proportions: tested for TB infection, with available test results, with positive results, chest imaging ordered, LTBI diagnoses, and with LTBI treatment prescribed, started, and completed. Percentages were averaged across four sites representing multiple clinics. Results Of 3.5 million persons seeking care, on average, 48% were at higher risk of TB infection, and 69% of these were cascade eligible. Among cascade eligible individuals, 14% were tested; 92% of those tested had available results, with 17% testing positive. Of those testing positive, 82% underwent chest imaging; 70% met LTBI diagnostic criteria. Among those diagnosed, 61% were prescribed treatment; 87% started treatment, with 56% completing treatment. Conclusions and Relevance Although an average of 17% of participants tested had TB infection, most (average, 86%) higher-risk individuals were not tested; an average of 39% of those diagnosed were not prescribed treatment, and nearly half (average, 44%) did not complete treatment. Targeted interventions to increase LTBI testing and treatment completion among higher-risk individuals could facilitate more preventive treatment and reductions in TB-associated morbidity. Introduction Tuberculosis (TB) elimination in the US is defined as a national incidence rate of <1 case per 1,000,000 population. Currently, the incidence rate is 27 times the elimination threshold. 1 , 2 The majority of TB disease in the US is due to reactivation of latent TB infection (LTBI), disproportionately among non–US-born persons likely infected in their countries of birth, despite LTBI treatment being approximately 90% effective for preventing TB disease progression. 3 – 9 The Centers for Disease Control and Prevention (CDC) and the US Preventive Services Task Force (USPSTF) recommend TB screening for persons who were born in or have lived outside the US in countries where TB is more prevalent. 10 – 12 However, TB screening among individuals at higher risk in the United States is inconsistently implemented, and LTBI treatment completion rates are historically low. 7 , 13 – 16 Increasing LTBI treatment among non–US-born persons in the US might be one of the most effective tools for TB elimination. 17 Although most TB care is performed in public health clinics, primary care clinics represent a critical setting for this scale-up, as many provide routine medical care for persons at higher risk of infection. 13 , 14 , 18 – 23 The LTBI care cascade defines steps from identifying individuals at increased risk for TB infection through to treatment completion. Assessing patients eligible for and receiving care at each step is a useful for identifying gaps across the cascade, which can be used to improve TB prevention in health care systems. 15 , 24 , 25 However, defining and evaluating the LTBI care cascade using electronic health record (EHR) data from primary care settings poses several challenges. 15 , 26 , 27 EHR data are not collected for the purpose of developing care cascades; key risk factors are often missing or not standardized, and there are no variables to indicate definitive LTBI diagnosis or treatment outcomes. 14 , 28 , 29 EHR data elements are not standardized across health care systems or even individual clinics. Furthermore, the longitudinal nature of the care cascade, including developing standardized time allowed between steps, has not been previously considered. The third iteration of the Tuberculosis Epidemiologic Studies Consortium (TBESC-III) aims to improve LTBI care cascade outcomes among non–US-born populations at higher risk of infection who seek care in primary care settings. 30 The objective of this analysis was to standardize the methodology for defining the LTBI care cascade and assess outcomes in TBESC-III primary care networks using longitudinal EHR data to guide future interventions to improve LTBI care. This care cascade provides a baseline understanding of LTBI testing and treatment outcomes in primary care clinics, identifying specific steps for proposing interventions to improve outcomes across the LTBI care cascade. Methods Study Design and Population Detailed information on TBESC-III consortium study design and population is available (eMethods 1 in Supplement 1 ). Briefly, the consortium has 4 sites; all primary care health care systems serving at least 10,000 non–US-born individuals annually from countries with high TB disease incidence rates (defined as ≥10 cases per 100,000 persons among expatriates living in the US). 31 Study participants had to have (1) reported non-US birth or, if unknown, a non-English language preference, (2) a clinic visit during the study period at a participating clinic and (3) meet additional site-specific eligibility criteria ( Table 1 ). EHR data were extracted on study participants’ demographics, visits, and imaging that occurred during the study period and within the 2 years preceding it. All available EHR data on TB- and LTBI-related diagnostic testing; International Classification of Diseases , Ninth Revision ( ICD-9 ) and International Statistical Classification of Diseases, Tenth Revision ( ICD-10 ) diagnostic codes; and prescription data were extracted without time limits. An aggregate count of patients at each clinic meeting study eligibility, independent of nativity or language, was collected to determine the proportion study participants represented among the total population at each site. Descriptive analysis was completed in R (version 2025.05.01+513, 2025 Posit Software, PBC) View this table: View inline View popup Download powerpoint Table 1. Study Period Start and End Dates and Eligible Population by Site a , Tuberculosis Epidemiologic Studies Consortium (TBESC-III) Defining the LTBI Care Cascade Steps The site percentage for each care cascade step was the count of participants who met the cascade step definition divided by the total number of participants who met the definition for the preceding step at that site. To account for a wide range of clinic population sizes and ensure percentages were not driven by a single site, the percentage of individuals completing each cascade step was reported as an average of site-specific percentages. Patients were required to complete all steps successively to be counted. Figure 1 summarizes the care cascade steps and their definitions. Time allowed for completing each step was based on site clinical practices; there was a consensus to allow for maximum time when there were differences in clinical practices among sites. Download figure Open in new tab Figure 1. Latent Tuberculosis Infection Care Cascade Definitions, Tuberculosis Epidemiologic Studies Consortium (TBESC-III) a Individuals born in Puerto Rico, US Virgin Islands, Guam, and the Northern Mariana Islands were categorized as US-born. b Based on electronic health record data variables and ICD-9 and ICD-10 codes (eTable 1 in Supplement 1 ). c Tuberculin skin test, IGRA, acid-fast bacilli culture or smear, or nucleic acid amplification test. A valid test result was defined as a positive or negative test result. d CT data was submitted by 2 sites. e ICD-9: 795.52 and ICD-10: R76.12 and Z22.7. f If an individual completes 6 months of INH within 9 months, this amount of treatment would still be considered sufficient for treatment completion, even if they were prescribed 9 months of INH. 3HP indicates once-weekly isoniazid and rifapentine for 12 weeks; 3HR, 3 months of isoniazid and rifampin or rifabutin; 4R, 4 months of rifampin or rifabutin; CT, computed tomography; CXR, chest x-ray; ICD-9 , International Classification of Diseases , Ninth Revision ; ICD-10 , International Classification of Diseases, Tenth Revision; IGRA, interferon-gamma release assay; INH, isoniazid; LTBI, latent tuberculosis infection; and TB, tuberculosis. The care cascade begins with participants who met TB screening criteria, defined as reported non-US birth, or if country of birth was unknown or not collected, a primary language other than English. Demographic characteristics, specific risk factors for TB infection or disease, and insurance status at first visit during the study period were summarized for the population that met screening criteria; proportions for these variables were not averaged across sites but were stratified by site. The next step, cascade eligibility, identified persons for whom screening was indicated based on having no evidence of prior testing or treatment. Persons with a TB or LTBI diagnosis or treatment prescribed before or at their first visit during the study period, or TB diagnosis or treatment prescribed during the study period, were ineligible. TB and LTBI diagnosis were defined based on submitted EHR visit variables and diagnostic codes (eTable 1 in Supplement 1 ). TB and LTBI treatment were based on submitted EHR visit variables and regimens prescribed using prescription data (eTable 2 in Supplement 1 ). We excluded individuals who had a valid diagnostic test for TB infection or disease before their first visit during the study period. A valid test result was defined as a positive or negative test result using a tuberculin skin test (TST), interferon-gamma release assay (IGRA), acid-fast bacilli culture or smear, or Mycobacterium tuberculosis complex nucleic acid amplification test. Next, we identified persons with any IGRA test ordered during the study period, including TSPOT. TB , QuantiFERON-TB Gold, QuantiFERON-TB Gold In-Tube, or QuantiFERON-TB Gold Plus. We then determined those with a valid test result (positive or negative) and those with a positive test result. Next, we identified persons who had either a chest x-ray (CXR) or computed tomography (CT) of the chest ordered within 180 days before or after the date that a positive IGRA was ordered. This step was followed by an LTBI diagnosis (an LTBI ICD-9 code [795.52] or ICD-10 code [R76.12 and Z22.7]) reported within 90 days after the date any chest imaging was ordered. The CXR or CT had to be ordered and the diagnostic code reported during the study period or within 90 days after the study period end date for that site. Due to concerns that the lack of standardization across clinics in using LTBI diagnostic codes could underestimate the number of diagnoses, we also characterized a care cascade that removed the LTBI diagnosis step. For the treatment steps, we identified the following LTBI treatment regimens using prescription drug records: isoniazid and rifapentine for 3 months (3HP), rifampin/rifabutin for 4 months (4R), isoniazid and rifampin/rifabutin for 3 months (3HR), and isoniazid for 6 months (6H) or 9 months (9H); we were unable to distinguish between 6H and 9H regimens. An LTBI treatment regimen had to be prescribed within 180 days of a chest imaging order date or 270 days of a positive diagnostic test order date; it had to be prescribed at a visit during the study period or within 90 days after the study period end date. To determine persons who started the treatment regimen, we assessed whether prescribed medications for a regimen were filled. Treatment completion was determined based on whether a minimum number of doses were filled within a specific time frame based on the prescribed regimen. Persons had until 14 months after the end of the study period to complete treatment. We stratified treatment prescribed, started, and completed by LTBI treatment regimen; multiple regimens could be prescribed and started for each individual. A detailed description of treatment prescription, initiation, and completion methods is available (eMethods 2 in Supplement 1 ). Ethical Considerations This study was reviewed by and conducted under the authority of the CDC and was determined to not be human subjects research as the primary intent was routine disease surveillance. The study was conducted consistent with applicable federal law and CDC policy. a Results There were 548,923 persons that met screening criteria and were included in the study (i.e. participants). This was an average of 47.9% of the total clinic population of 3,522,077 patients across sites. Among those who met screening criteria, the majority (52%; n=285,754) were aged 40 to 64 years; 58% (n=320,244) were female, and 37% (n=203,209) reported Hispanic ethnicity ( Table 2 ). Among 326,993 persons who reported non-Hispanic ethnicity, the majority (82%; n=267,925) identified as Asian. Mexico was the most frequently reported country of birth among those who met screening criteria (20%; n=112,524), followed by China (15%; n=81,968) and the Philippines (12%; n=65,906). Among those who met screening criteria, the top 3 reported primary languages were English (49%; n=268,371), Spanish or Castilian (25%; n=138,721), and Chinese (15%; n=83,235). View this table: View inline View popup Table 2. Characteristics of Participants Meeting Tuberculosis Screening Criteria by Study Site Among those who met screening criteria, an average of 68.8% (n=379,176) met cascade eligibility across sites ( Figure 2 ). Among the 169,747 who were ineligible, the majority (90.7%; n=153,898) were removed due to having at least 1 TB diagnostic test with a positive or negative result before their first study period visit (e Figure 3 in Supplement 1 ). Regardless of testing history, 1.0% (n=1,653) of ineligible persons had evidence of TB diagnosis or treatment in their EHR, and 36.6% (n=62,133) had evidence of LTBI diagnosis or treatment before their first visit; 2.4% (n=4,140) had evidence of both TB disease and LTBI diagnosis or treatment. Download figure Open in new tab Figure 2. Latent Tuberculosis Infection Care Cascades in the Tuberculosis Epidemiologic Studies Consortium (TBESC-III) a Individuals born in Puerto Rico, US Virgin Islands, Guam, and the Northern Mariana Islands were categorized as US-born. b Based on electronic health record data and ICD-9 and ICD-10 codes. c Tuberculin skin test, IGRA, acid-fast bacilli culture or smear, or nucleic acid amplification test. d CT data was only submitted by 1 site. e ICD-9: 795.52; ICD-10: R76.12 and Z22.7. CT indicates computed tomography; ICD-9 , International Classification of Diseases, Ninth Revision ; ICD-10, International Classification of Diseases, Tenth Revision ; IGRA, interferon-gamma release assay; LTBI, latent tuberculosis infection; and TB, tuberculosis. Download figure Open in new tab Figure 3. Latent Tuberculosis Infection Treatment Regimens Prescribed, Started, And Completed a Average percentage of regimens across sites prescribed that were started. b Average percentage of regimens across sites started that were completed. 3HP indicates once-weekly isoniazid and rifapentine for 12 weeks; 3HR, 3 months of isoniazid and rifampin or rifabutin; 4R, 4 months of rifampin or rifabutin; 6H, isoniazid for 6 months; 9H, isoniazid for 9 months. Among the cascade-eligible population, an average of 13.9% (n=18,101) had an IGRA ordered; an additional 0.36% (n=2,109), on average, were tested using TST. Among those tested using IGRA, an average of 92.4% (n=16,989) had a valid test result (i.e., positive or negative); an average of 16.6% (n=2,604) had a positive IGRA result, among those, an average of 81.7% (n=2,255) had chest imaging ordered. An average of 69.6% (n=1,607) were subsequently diagnosed with LTBI. Among those diagnosed with LTBI, an average of 60.9% (n=946) were prescribed LTBI treatment. Overall, 1,482 regimens were prescribed among the 946 persons prescribed treatment; on average, 87.8% were rifamycin-based short-course regimens ( Figure 3 ). Among those prescribed treatment, an average of 87.0% (n=873) started treatment; on average across sites, 69.5% of 4R, 52.9% of 3HP, 71.3% of 3HR, and 63.8% of 6H or 9H regimens prescribed were started. Among persons who started treatment, the average completion rate was 55.5% (n=505). On average, across sites, 45.3% of 4R, 35.6% of 3HP, 73.6% of 3HR, and 45.3% of 6H or 9H regimens started were completed. In an alternate cascade removing the LTBI diagnostic step ( Figure 2 ), among those with chest imaging, the average proportions were as follows: 51.0% (n=1,102) were prescribed treatment, 84.9% (n=994) started treatment, and 57.0% (n=565) completed treatment. Site-specific care cascades had notable differences across all care cascade steps ( Figure 4 ). Download figure Open in new tab Figure 4. Latent Tuberculosis Infection Care Cascade by Tuberculosis Epidemiologic Studies Consortium (TBESC-III) Site a Individuals born in Puerto Rico, US Virgin Islands, Guam, and the Northern Mariana Islands were categorized as US-born. b Based on electronic health record data and ICD-9 and ICD-10 codes. c Tuberculin skin test, IGRA, acid-fast bacilli culture or smear, or nucleic acid amplification test. d CT data was only submitted by 1 site. e ICD-9: 795.52; ICD-10: R76.12 and Z22.7. CT indicates computed tomography; ICD-9 , International Classification of Diseases, Ninth Revision ; ICD-10, International Classification of Diseases and Related Health Problems, Tenth Revision ; IGRA, interferon-gamma release assay; LTBI, latent TB infection; and TB, tuberculosis. Discussion Using a longitudinal EHR cohort from 4 diverse primary care networks, we characterized the LTBI care cascade, from identifying those who met screening recommendations through treatment completion. Previous studies have characterized portions of the LTBI care cascade or analyzed specific populations, a single clinic or hospital system, but none have assessed the LTBI care cascade through treatment completion across multiple primary care settings. Nor have longitudinal EHR data elements and clinical protocols been used to establish timeframes for achieving steps. 14 , 27 , 32 , 33 This LTBI care cascade establishes rates of LTBI testing, diagnosis, and treatment prescription, initiation, and completion among individuals at increased risk for LTBI who seek care in primary care settings. This analysis suggests opportunities to expand testing and treatment after LTBI diagnosis to prevent TB disease. Although an average of 17% of participants had TB infection, an average of 86% of higher-risk individuals were not tested. An average of 39% of individuals diagnosed with LTBI were not prescribed treatment, and nearly half (average, 44%) did not finish treatment. Primary care clinics are relevant settings for characterizing the LTBI care cascade and addressing areas where TB prevention can be expanded along the care cascade. Almost half the population seeking care at these primary care clinics were identified as being at higher risk for TB infection. Additionally, the average 16.6% IGRA test positivity observed is similar to other reported LTBI prevalence rates among non–US-born persons based on IGRA positivity. 34 – 38 Previous studies have demonstrated opportunities to prevent TB disease through assessment of LTBI care cascade outcomes, including testing persons recommended for screening with recommended diagnostic tests, prescribing treatment for persons diagnosed, and ensuring treatment completion. 7 , 13 – 16 , 39 Similarly, this cascade demonstrates the potential for improving screening among populations at higher risk and treatment outcomes among those diagnosed with LTBI. The proportion tested was lower than reported in other primary care 13 , 14 , 39 and nonprimary care settings, 15 among populations at higher risk for infection. However, using IGRA predominantly for TB testing contrasts with previous studies in primary care settings, where TST was predominantly used. 14 , 26 , 40 , 41 We found a higher proportion of treatment prescribed and subsequently started compared with other studies, 15 including those in other primary care settings. 14 , 16 , 39 Although the proportion that completed treatment was higher than in similar settings, 14 – 16 , 42 it was lower than among individuals who received care at public health clinics 21 , 26 , 43 or where directly observed therapy was performed. 44 The rates of treatment prescription, initiation, and completion varied across sites and treatment regimens. Most treatment regimens prescribed were rifamycin-based regimens, indicating that TBESC-III sites have already implemented CDC’s recommendation for short-course rifamycin-based regimens, in contrast with other studies in primary care settings that show many practitioners might still widely use 6H/9H. 14 , 16 , 44 As seen in other studies, we observed that short-course regimens had higher completion rates than 6H/9H. 7 , 15 , 44 , 45 The high proportion of short-course regimens prescribed might have contributed to the higher rate of LTBI treatment completion in these primary care settings. We developed standardized methods for defining every step in the LTBI care cascade using EHR data, including establishing time allowed for achieving steps based on sites’ clinical protocol, and detailed methodology for determining treatment prescription, initiation, and completion. The EHR data elements and definitions for each step of this care cascade are the first to incorporate the longitudinal progression of care (e.g., diagnosis after chest imaging, treatment prescription after diagnosis) in totality, from screening to treatment completion. However, challenges in defining care cascade steps persisted. The number of individuals who met screening criteria was based on imperfect factors. Preferred language was a proxy for country of birth for all individuals at the smallest study site, and EHR data did not include travel or prior residence in countries outside the US. We were also unable to assess other risk factors for TB, including immunosuppression, close contact with a TB case, or history of homelessness or incarceration, when determining if an individual met screening criteria. In addition, CXR results were unavailable, so diagnostic codes were used as a proxy for LTBI diagnosis after TB disease was ruled out. However, LTBI diagnostic code use varies widely across clinics and physicians. 46 Previous literature has shown that diagnostic codes alone have low sensitivity when trying to identify TB cases in EHR records. 29 , 47 Similarly, TBESC-III clinics indicated LTBI diagnostic codes used to define the diagnostic step of the care cascade might not fully capture all persons diagnosed with LTBI. Our alternate care cascade that removed the LTBI diagnostic code requirement indicated an additional 6.9% (n=156) of persons who received chest imaging were prescribed treatment despite not having an LTBI diagnostic code present in the patient’s EHR. Thus, requiring an LTBI diagnostic code might underestimate LTBI diagnosis and treatment. These sites are not representative of all primary care clinics in the US. This analysis was of a self-selected group of clinics dedicated to improving TB, evidenced by their desire to join TBESC-III. Thus, the uptake of TB testing and LTBI treatment recommendations in other primary care settings could be lower elsewhere. Additionally, each clinic had different clinical practices surrounding steps of the care cascade, specifically related to the time between achieving each step. Thus, although the consortium came to a consensus for time allowed between events, all individuals moving through the care cascade may not have been identified. Several limitations were identified related to determining treatment initiation and completion based on pharmacy data. We were unable to determine from EHR data if individuals were offered treatment and declined it. Furthermore, prescription variables, such as dosing, frequency, quantity, and refills, were not standardized across sites and were sometimes incomplete, requiring an assumption that common dosing and frequency were used based on CDC guidelines. 7 Individuals might also have filled prescriptions at outside pharmacies, causing an underestimation of treatment initiation and completion. Lastly, we were unable to confirm whether individuals actually ingested the medication. Finally, EHR data available might not represent the entirety of an individual’s medical history. Previous testing, diagnosis, or treatment for LTBI or TB disease might not have been available, and individuals might have been inappropriately deemed eligible for testing; this could have downstream effects on the care cascade. In summary, we established a standardized methodology for estimating a complete LTBI care cascade using longitudinal EHR data, including standardized time intervals between steps and a new approach to assess LTBI treatment prescription, initiation, and completion using pharmacy data. We used these methods to assess outcomes in primary care settings where a large proportion of the population met TB screening criteria. We identified opportunities for expanding TB prevention efforts in TB testing, and in prescribing and completing LTBI treatment. Using this information, health care providers can design and implement interventions to prevent TB-associated morbidity and advance TB elimination in the US. This approach can be applied in other primary care settings to identify opportunities for improving TB care, as well as to design and evaluate the impact of specific interventions. Data Availability All data produced in the present study will be made publicly available after the conclusion of the contract. Acknowledgments We would like to acknowledge the contributions of Kumar Batra, Danique Gigger, Juan (Antonio) Hernandez, Mehabuba Rahman, Julia Raykin, Noah Schwartz, Sammi Smith, Thara Venkatappa, Jonathan Wortham, and Angus Wu to this manuscript. Furthermore, we thank all study participants and site staff who are participating in TBESC-III. Footnotes ↵ a See 45 C.F.R. part 46, 21 C.F.R. part 56; 42 U.S.C. §241(d); 5 U.S.C. §552a; 44 U.S.C. §3501 et seq. References 1. ↵ Filardo TD , Feng PJ , Pratt RH , Price SF , Self JL. Tuberculosis - United States, 2021 . MMWR Morb Mortal Wkly Rep . 2022 ; 71 ( 12 ): 441 – 446 . doi: 10.15585/mmwr.mm7112a1 OpenUrl CrossRef PubMed 2. ↵ Williams PM , Pratt RH , Walker WL , Price SF , Stewart RJ , Feng PJI. Tuberculosis — United States, 2023 . MMWR Morb Mortal Wkly Rep . 2024 ; 73 ( 12 ): 265 – 270 . 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