Mining unexpected patterns using decision trees and interestingness measures: a case study of endometriosis

In: Soft Computing · 2015 · vol. 20(10) , pp. 3991–4003 · doi:10.1007/s00500-015-1735-0 · W1950602547
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This paper proposes a domain-driven data mining model using decision trees and interestingness measures to find unexpected patterns contrasting prior knowledge in endometriosis treatment recovery rates.

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The paper proposes a domain-driven unexpected pattern mining framework that uses decision trees to compare recovery rates between two treatments and employs defined interestingness measures to identify patterns that contrast with prior domain knowledge in a closed-loop mining process. The authors apply the approach to retrospective data from transvaginal ultrasound-guided aspirations, using decision trees as a new tool for this treatment-comparison setting, and report that the model can successfully identify and compare treatment effects via recovery-rate patterns. A stated caveat is that the study is a case example relying on retrospective data and on how domain users’ prior knowledge is operationalized through the chosen interestingness measures. This paper is centrally about endometriosis — it uses retrospective transvaginal ultrasound-guided aspiration data on endometriosis-related ovarian lesions to mine unexpected, interesting recovery-rate patterns with decision trees and interestingness measures.

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Abstract

Because clinical research is carried out in complex environments, prior domain knowledge, constraints, and expert knowledge can enhance the capabilities and performance of data mining. In this paper we propose an unexpected pattern mining model that uses decision trees to compare recovery rates of two different treatments, and to find patterns that contrast with the prior knowledge of domain users. In the proposed model we define interestingness measures to determine whether the patterns found are interesting to the domain. By applying the concept of domain-driven data mining, we repeatedly utilize decision trees and interestingness measures in a closed-loop, in-depth mining process to find unexpected and interesting patterns. We use retrospective data from transvaginal ultrasound-guided aspirations to show that the proposed model can successfully compare different treatments using a decision tree, which is a new usage of that tool. We believe that unexpected, interesting patterns may provide clinical researchers with different perspectives for future research. Similar content being viewed by others Abbreviations - ANOVA: - Analysis of variance - D\(^{3}\)M: - Domain-driven data mining - CA-125: - Cancer antigen 125, carcinoma antigen 125, or carbohydrate antigen 125 - BMI: - Body mass index - CART: - Classification and regression tree - EST: - Ethanol sclerotherapy - ID3: - Iterative Dichotomiser 3 algorithm - CHAID: - Chi-Square Automatic Interaction Detector - tech(): - Technical interestingness measures - biz(): - Business interestingness measures - act(): - Actionability of a pattern - tech_obj(): - Technical objective interestingness measures - tech_sub(): - Technical subjective interestingness measures - biz_obj(): - Business objective interestingness measures - biz_sub(): - Business subjective interestingness measures - RecoveryRate(): - Probability patient recovers from illness - IM \(_{\mathrm{tech\_obj}}\) : - Technical objective interestingness measure - IM \(_{\mathrm{tech\_sub}}\) : - Technical subjective interestingness measure - IM \(_{\mathrm{biz\_obj}}\) : - Business objective interestingness measure - IM \(_{\mathrm{biz\_sub}}\) : - Business subjective interestingness measure

References

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Mining unexpected patterns using decision trees and interestingness measures: a case study of endometriosis. Soft Comput 20, 3991–4003 (2016). https://doi.org/10.1007/s00500-015-1735-0 Published: Issue date: DOI: https://doi.org/10.1007/s00500-015-1735-0

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