Remodeling of Intracellular Architecture During SARS-CoV-2 Infection of Human Endothelium | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Remodeling of Intracellular Architecture During SARS-CoV-2 Infection of Human Endothelium Agata Kubisiak, Agnieszka Dabrowska, Pawel Botwina, Patrycja Twardawa, and 5 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-4582723/v1 This work is licensed under a CC BY 4.0 License Status: Published Journal Publication published 30 Nov, 2024 Read the published version in Scientific Reports → Version 1 posted 10 You are reading this latest preprint version Abstract Clinical data indicate that COVID-19 causes cardiovascular complications, regardless of the severity of the disease. In this work, we have shown that SARS-CoV-2 infection causes vascular dysfunction due to the modification of endothelial cell elasticity. We used human pulmonary endothelial cells (HPAECs) expressing the ACE2 receptor as a model of the endothelium. This system mimics in vivo conditions, as it allows virus entry but not replication. As a reference, we used A549 epithelial cells, a well-described model that supports productive replication of SARS-CoV-2. We show that the infection of HPAECs results in cell stiffening, which correlates with increased polymerization of actin filaments and induction of the inflammatory response. On the contrary, A549 epithelial cells supporting viral replication showed decreased stiffness. We demonstrated the endothelial stiffening effect for four variants of the SARS-CoV-2 virus: Wuhan, Alpha, Beta, and Delta. Consequently, we believe that nonproductive SARS-CoV-2 infection associated with stiffening of the endothelium may be clinically relevant and result in dysfunction and damage to this tissue. SARS-COV-2 COVID-19 endothelial cells variants elasticity AFM Figures Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 6 1. Introduction Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that causes coronavirus disease 2019 (COVID-19) promoted the pandemic not seen after the Spanish flu in the beginning of previous century. Extremely high number of cases created a convenient platform for virus evolution and resulted in the rapid emergence of several genetic variants of the SARS-CoV-2. The first three named Alpha (B.1.1.7), Beta (B.1.351), and Delta (B.1.617.2), although they have the same origin, differ in transmissibility and/or severity of the associated disease. [ 1 , 2 ] The available data unquestionably point to the significant role of the endothelium in the development of the severe course of COVID-19 and the long COVID. [ 3 – 5 ] In most cases, endothelial dysfunction is described as an abnormal cellular phenotype in which vascular balance shifts to vasoconstriction and inflammation. The clinical signs of endotheliitis and vasculitis are reported as post-infection complications that may appear in a wide range of organs, including the kidney, heart, small intestine, lung, and skin [ 6 ] . This further supports the observation that COVID-19 is a systemic disease affecting the endothelial compartment. [ 7 – 9 ] However, the biomechanical understanding of this process remains unclear. [ 9 , 10 ] A distinction is made between direct and indirect causes of the development of endothelial dysfunction. The former is related to the direct consequences of infection, while the latter is the result of endothelial exposure to cytokines (cytokine storm). [ 11 ] Local and systemic inflammation that characterizes COVID-19 activates and damages the endothelium, resulting in an elevation of von Willebrand factor (vWB) in the blood, making the vasculature more susceptible to thrombotic events. [ 12 – 15 ] However, the tissue is also considered the infection site. In postmortem tissue evaluation, Varga [ 16 ] and others [ 17 , 18 ] identified viral content in blood vessels and blood. A report by Jacobs et al. [ 19 ] published in 2022 refers to the clinical study that proves the occurrence of viral proteins in the plasma of patients with COVID-19. The authors indicate the correlation of viremia with disease severity, its outcome, and specific inflammatory biomarkers. While virus particles and virus RNA have been found in the blood and endothelial tissues and we know that the SARS-CoV-2 virus can cause abortive infection of the human endothelium, the consequences of the interaction between virus and endothelium in the clinic remain to be elucidated. [ 20 ] Some autopsy-based studies following COVID-19 have shown multifocal vascular damage, as well as activation of endothelial cells. [ 21 ] Furthermore, among the etiological factors of the observed endothelial dysfunction, pro-inflammatory cytokines produced during COVID-19 were reported. Buzhdygan et al. [ 22 ] have shown that the SARS-CoV-2 spike protein promotes the loss of integrity of the endothelial barrier and increases endothelial inflammation and permeability due to modulation of the renin-angiotensin pathway, potentially affecting the function of the blood-brain barrier. Similarly, Rhea et al. [ 23 ] show that virus-induced structural remodeling of the endothelial tissue results in increased permeability of the blood-brain barrier to the virus. It is also known that the spike protein, which protrudes from the surface of the virus particle, interacts with the angiotensin-converting enzyme 2 (ACE2) protein, which acts as a cellular receptor. [ 24 ] Moreover, our recent study [ 25 ] showed that ACE2 is present on the surface of HPAEC cells, hence these cells should become permissive for SARS-CoV-2, however, for efficient infection several other factors such as TMPRSS2 are required. Importantly, an increasing number of scientific reports also indicate the potential role of integrins as SARS-CoV-2 co-receptors in the endothelium. [ 26 ] In this work, we hypothesized that endothelial nanomechanics play an important role in the initiation and progression of endothelial dysfunction during SARS-CoV-2 infection. Nanomechanical properties of endothelial cells such as cellular elasticity/stiffness constitute an important part of the endothelial phenotype and their alteration is a starting point of endothelial dysfunction development. [ 27 – 29 ] As we have shown in previous works, the early response of endothelial cells to pathological factors (e.g., proinflammatory cytokines, high glucose) is associated with increased cell stiffness and actin cytoskeleton remodeling, resulting in decreases in nitric oxide (NO) production and activation of the inflammatory pathway. [ 30 – 32 ] Consequently, nanomechanical changes occurring in endothelial cells contribute to the development of vascular dysfunction, atherosclerosis, and hypertension and ultimately cause serious systemic complications. [ 29 ] In our study, we evaluate the nanomechanical response of human pulmonary artery endothelial cells (HPAECs) and A549 epithelial cell line expressing ACE2 and TMPRSS2 (A549 +/+ ) infected with SARS-CoV-2 highlighting the important role of virus variability (WT, Alpha, Beta, Delta) in the course of the nanomechanical changes. We have analyzed cell topography correlated with cell elasticity maps by using the atomic force microscopy (AFM) method completed by fluorescence microscopy and quantitative PCR coupled with reverse transcription (RT-qPCR) analysis. 2. Results 2.1. SARS-CoV-2 induces abortive infection in HPAEC cells A549 +/+ and HPAEC cells were infected with the SARS-CoV-2 virus. At 2, 24, and 48 h post infection (p.i.), the supernatant and cells were collected for RT-qPCR and sg mRNA analysis, and the cells were fixed. Detection of sg mRNA was carried out to confirm active viral replication, because once the virus enters cells, replication of the viral genome and production of sg mRNA begins. Human lung adenocarcinoma A549 +/+ cells are a permissive for SARS-CoV-2 virus infection and were used as a positive control. We confirmed the efficient replication in A549 +/+ cells by RNA quantification (Fig. 1 a), the presence of viral sg mRNA (Fig. 1 b), and by the nucleocapsid protein detection (Fig. 1 c-d). The same techniques were used to confirm infection in HPAEC cells; SARS-CoV-2 virus does not replicate productively in the cells tested, as indicated by RT-qPCR analysis (Fig. 1 e ) ; however, the presence of sg mRNA indicates that the genome replication occurs (Fig. 1 f). In addition, using an immunostaining method, virus particles (indicated by white arrows) were labeled after 2 and 24 h p.i. (Fig. 1 g-h). The results consistently indicate the abortive infection of SARS-CoV-2 in HPAEC cells. 2.2 Impact of SARS-CoV-2 infection on the nanomechanical properties of A549 +/+ cells and HPAECs Differences in the course of infection for A549 +/+ cells and HPAEC prompted us to perform nanomechanical measurements. Our aim was to check whether changes in elasticity were observed despite the lack of effective infection of HPAECs. Figure 2 shows the results of the AFM nanomechanical measurements and actin cytoskeleton imaging obtained for A549 +/+ and HPAECs infected with SARS-CoV-2 in the following time points: 2, 24, and 48 h. A549 +/+ cells showed a time-dependent, biphasic change of the E values. After 2 h p.i., the values of E significantly increased for all measured cells in comparison to the mock sample, as shown on Fig. 2 a. For the subsequent timepoints (24 h and 48 h), a significant decrease in E value was observed. The relative changes plot shown in Fig. 2 a indicates the percentage change in the E parameter relative to mock. For 2 h p.i. times, the E parameter increases by 44% compared to mock, while for the remaining times it decreases, reaching a drop of 42% after 48h p.i. The quantitative analysis of E was supported by qualitative data visualization in a form of 2D AFM images of cells morphology correlated with distribution of E parameters (elasticity maps), as showed in Fig. 2 b. By maintaining a constant range of E values for all elasticity maps, a significant reduction of this parameter is shown with increasing time of p.i. and it is correlating with gradual injury to the cell structure. Observed nanomechanical changes are strengthened by fluorescence images of F-actin structure in infected cells (Fig. 2 c) as well as quantitative analysis of fluorescence intensity of phalloidin (Fig. 2 d). All together indicate progressive damage of the A549 +/+ cells after infection with SARS-CoV-2 occurring parallelly with a significant change in elasticity, and F-actin content. HPAECs infected with SARS-CoV-2 also showed significant changes in cell stiffness and structure, which correlated with the remodeling of the actin cytoskeleton. At first, similar to the infected A549 +/+ cells, significant increase in cellular stiffness (96% relative to mock) has been observed at 2 h p.i. Additionally, for this timepoint, the AFM image and elasticity map (Fig. 2 f) depict stiff membrane ripples on the cell surface, which leads to the conclusion that after infection there are changes in the perimembrane structures of the cell. After 24 h p.i, the values of E measured for subsequent cells did not change significantly relative to values obtained for 2 h p.i, as depicted in Fig. 2 e. However, in relation to mock, the infected HPAECs are significantly stiffer. The AFM image shows some structural changes in the cell membrane, and the elasticity map depicts a highly crosslinked actin network under the cell membrane. Observed changes indicate that infection with SARS-CoV-2 involves the cytoskeletal remodeling in HPAECs. This hypothesis is confirmed by result noted after 48 h p.i. For this time-point, further significant increase in cellular stiffness was proven by quantitative analysis of the cellular E (Fig. 2 e) and qualitative analysis of AFM images (Fig. 2 f) showing a stiff cortex covering the cell body. The fluorescence analysis depicts in Fig. 2 g and 2 h validate the AFM results, showing increase F-actin content in HPAECs infected with SARS-CoV-2. Moreover, the graph of relative changes (Fig. 2 e) highlights changes in relation to mock, indicating that the most significant increase in stiffness occurs after 48 h. Moreover, the presented increase in stiffness of HPAECs as well as the reorganization of the actin cytoskeleton leads to changes in endothelial layer structure, Fig. 2 g (bottom row), manifested by the loss of intercellular connections and the formation of characteristic gaps in the endothelial structure, suggesting an increase in the permeability of the endothelial layer. An increase in endothelial permeability and an increase in endothelial stiffness directly indicate the development of endothelial dysfunction caused by the SARS-CoV-2 virus. To address the question of the mechanism of the post infection cytoskeleton remodeling, we focused on RhoA proteins and vimentin playing important regulatory and transport roles in both epithelial and endothelial cells. Figure 3 shows the results of qualitative and quantitative analysis of fluorescence images obtained for RhoA protein and vimentin in A549 +/+ cells and HPAECs. Images were taken after 2 h, 24 h, and 48 h post infection and, as a reference, images were taken for mock for these same times points. In the case of A549 +/+ cells (Fig. 3 a, c) it was noticed an initial increase in the RhoA protein content (2 h p.i.). However, for the following 24 h and 48 h, a significant decrease of RhoA protein content was observed. Interestingly, an increase in the amount of RhoA protein is accompanied by a decrease in the amount of vimentin and, conversely, a decrease in the amount of RhoA protein is associated with an increase in the amount of vimentin, as shown in Fig. 3 b, d. A similar effect was noted for HPAECs. The results presented in Fig. 3 e-h indicate an increase in the amount of RhoA protein at subsequent p.i. time points and, in parallel, for the same p.i. time points, the vimentin signal is decreasing. Obtained results indicate the important role of RhoA and vimentin in the course of response of epithelial and endothelial cells to SARS-CoV-2 infection. 2. 3 Intracellular changes during SARS-CoV-2 infection in HPAECs. For this section, we presented the results as a comparison of the effect of infection of epithelial and endothelial cells with the variant B.1.13 of SARS-CoV-2 virus. A549 +/+ cells were used as a model system. However, in this work, we ask about the impact of the virus on the nanomechanical properties of HPAECs and linking these changes with the endothelial cell's phenotype. To address this question, we performed fluorescence tests using selected markers of endothelial function. The results of the qualitative and quantitative analysis are shown in Fig. 4 . In particular, we assessed the mitochondrial homeostasis markers like expression of the anti-apoptotic protein Bcl-2 level and mitochondrial oxidative stress (Fig. 4 a-d), as well as markers of endothelial dysfunction (Fig. 4 e-j). Figure 4 a-b present the results of mitochondrial homeostasis markers showing an increase of Bcl-2 protein content with the increase of p.i time. Bcl-2 proteins, known as antiapoptotic proteins, confer cellular resistance to mitochondrial apoptosis and attenuate mitochondrial oxidative stress. [ 33 ] As shown (Fig. 4 a-d) in infected HPAECs cells, a slight increase in mitochondrial reactive oxygen species was observed, which in turn we associate with an increase in Bcl-2 activity. Our result shows that after infection with the SARS-CoV-2 virus, a defense reaction develops in endothelial cells, protecting the cells against apoptosis. The next panel presenting the endothelial dysfunction markers (Fig. 4 e-j) has shown that after infection with variant B.1.13 of SARS-CoV-2 virus in HPAECs develop an inflammatory response. The both qualitative (Fig. 4 e, g, i) and quantitative (Fig. 4 f, h, j) analysis, indicate a gradual increase in the number of ICAM-1 molecules, a reduction in the glycocalyx layer associated with the rapid increase in the von Willebrand factor were observed. An increase in the activity of ICAM-1 adhesion molecules (Fig. 4 e, f), a standard marker of endothelial inflammation, indicates an increase in the adhesion of circulating leukocytes to the endothelium and a loss of integrity of the endothelial barrier. At the same time, the glycocalyx is reduced (Fig. 4 g-h ) . The structure of this sugar-rich layer protects the endothelial cells against the adhesion of circulating blood cells [ 34 ] and viruses. [ 25 ] Its reduction enhances thrombosis and pro-thrombotic complications in blood vessels. In our work, we also noticed that glycocalyx reduction increases the expression of the vWB factor (Fig. 4 i-j), which further promotes the development of vascular dysfunction and thrombosis. Bcl-2 protein and MitoSox analysis performed for HPAECs infected with SARS-CoV-2 (WT). ( a,c) Representative images of Bcl-2 ( a ) and MitoSox ( c ). Mock image was taken for 24 h post inoculation. ( b,d) Quantitative analysis of the fluorescence intensity. Data shown as a relative value to the reference measurements, i.e. ock 2 h,24 h, and 48 h. Mock image was taken for 24 h post inoculation. Bcl-2 -green; MitoSOX – red. Markers of ECs dysfunction panel shows the post-infection analysis of ICAM-1 molecule, glycocalyx layer (heparan sulfate, HS), and vWB performed for HPAECs. Fluorescent images of ICAM-1 molecule (e) , glycocalyx coverage (g) , and vWB (i) were taken for 2 h, 24 h, and 48 h post infection times. Depicted mock image was taken for 24 h post inoculation. Relative changes of fluorescence intensity of ICAM-1 (f) , glycocalyx (h) , and vWB (j) to the reference measurements, i.e. mock 2 h, 24 h, and 48 h. ICAM-1 – green; glycocalyx (HS) – yellow, vWB – red. Statistics: p values were determined by one-way ANOVA followed by Tukey’s post-hoc test, prepared in Origin software. The statistical significance was marked as: (*): p < 0.05, (**): p < 5E-3, (***): p < 5E-6. 2.4 Impact of SARS-CoV-2 variants: B..1.1.7 (Alpha), B.1.351 (Beta) and B.1.617.2 (Delta) on the nanomechanical properties of HPAECs To complete the knowledge about the elasticity changes of endothelial cells caused by the SARS-CoV-2 virus, we performed measurements for three variants: Alpha, Beta, Delta. The previous paragraphs showed a complete analysis of, stiffness, cytoskeleton changes, and dysfunction markers for HPAECs after infection with the B.1.13 variant of SARS-CoV-2 virus. In this section, we present changes in the elastic modulus and analysis of virus replication in HPAECs infected by subsequent variants. Obtained nanomechanical results for infected cells were compared both to the data obtained for the mock-inoculated cells as well as for non-infected control cells (Ctrl). This is because the values of elastic modulus of mock-inoculated cells change in subsequent time points, especially after 48 h p.i. The results are presented in Fig. 5 . At first, we tested the HPAECs infected with SARS-CoV-2 Alpha variant (Fig. 5 a-d). The obtained results showed a similar nature of elasticity changes as in the case of the B.1.13 variant (Fig. 5 a-b). The relative changes of elastic modulus (E) (Fig. 5 b) calculated in relation to mock-inoculated cells and non-infected cells depict a similar course of changes, showing significant stiffening of HPAECs infected with Alpha variant. However, RT-qPCR studies showed no virus replication in infected HPAECs (Fig. 5 c-d). For variant Beta, after infection, HPAECs were significant stiffer relative to mock and Ctrl (Fig. 5 e, f). However, for 24 h p.i time, the elasticity changes are less significant than for 2 h p.i. The most significant increase of stiffness in HPAECs infected with SARS-CoV-2 Beta variant is noted after 48h p.i.. Similarly, to the Alpha variant, no virus replication was observed in HPAECs (Fig. 5 g, h). The last tested variant of the SARS-CoV-2 virus was the Delta variant. Results of the stiffness changes in HPAECs infected with the Delta variant showed a completely different cell response compared to the previous variants. The reason for this difference seems to be the large variability of the E values obtained for mock-inoculated cells (Fig. 5 i). Therefore, a significant increase in stiffness compared to mock was obtained solely for HPAECs after 2 h p.i. For 24 h p.i. the change in HPAECs stiffness is insignificant in relation to mock, while, after 48h p.i., a significant decrease in stiffness was observed in relation to mock (Fig. 5 j). However, in the case of HPAECs infected with SARS-CoV-2 Deta variant, the relative changes of E calculated in relation to the non-infected cells show significant stiffening of HPAECs at 48 h after infection. In mock-inoculated group, HPAECs were treated with the same conditions and medium as the infected group, except they were not exposed to the virus. The mock medium, collected from mock-inoculated Vero cells, could contain factors sensitizing HPAECs. Analyzing the RT-qPCR result for HPAECs cells infected with the Delta variant of the SARS-CoV-2 virus (Fig. 5 k-l), an increase of virus yield in the lysate was observed (10^9 copies/ml) compared to the Alpha (10^7 copies/ml, Fig. 5 c) and Beta (< 10^7 copies/ml, Fig. 5 g). Proportionally, for subsequent p.i. times, the virus yield in supernatant is also significantly higher than for the Alpha (Fig. 5 d) and Beta (Fig. 5 h) variants. Since the amount of virus in the supernatant is low, it cannot be concluded that virus replication occurs in HPAECs. We assume that an increase in the amount of virus in the cell lysate means increased efficiency of virus entry into the cell. 3. Discussion In this work, we have shown the impact of SARS-CoV-2 on the stiffness of epithelial and endothelial cells. In particular, we have shown the correlation between the modification of cellular stiffness and the effectiveness of viral infection. Effective infection in A549 +/+ cells is followed by a significant two-phase change in cellular elasticity: 2 hours after infection, cells stiffen, while for longer times (24 h and 48 h p.i.) a significant reduction in cell stiffness was observed. Moreover, the reduction of cell stiffness correlates with increased viral yield in lysate and supernatant. In the case of endothelial cells, we did not observe efficient virus replication, which confirms the reports in the literature of abortive infection of the endothelium by the SARS-CoV-2 virus. [ 20 ] However, in our work, we focused on the nanomechanical aspect, proving that the endothelium infected with the SARS-CoV-2 virus becomes significantly stiffer. We postulate that an increase in cellular stiffness is the early symptom of viral infection. Literature data indicate that a change in endothelial stiffness is a specific biomarker of endothelial condition. [ 35 ] Endothelial cells are one of the main players in maintaining vascular homeostasis with the ability to act in both sensory and effector capacities. [ 36 ] The endothelial elasticity is an important part of the mechanosensitivity mechanism of endothelium which regulates the blood pressure. This is due to the correlation between the stiffness of cells and the NO production by eNOS, as proposed by Fels et al. [ 37 ] Stiff cells with polymerized actin fibers, resulting in weakened mechanosensitivity, are unable to produce NO, while soft cells overproduce it. Therefore, alterations of endothelial cell stiffness play a notable role in the pathogenesis of a broad spectrum of human diseases including hypertension, stroke, heart disease, diabetes, tumor growth, and metastasis. In our work, we have shown that changes in endothelial stiffness also occur in viral infection and are induced by direct contact of the virus with the endothelium. The increase in endothelial stiffness caused by SARS-CoV-2 virus infection disrupts the endothelial mechanism of blood flow regulation and at the same time amplifies the development of inflammation. This result is particularly important for understanding susceptibility to severe COVID-19 in patients with known viremia. Clinical studies indicate that patients diagnosed with plasma viremia have been more predisposed to vascular and tissue damage related to the severe course of COVID-19. [ 19 ] An increase in endothelial stiffness is a symptom of a viral infection. However, the question remains about the reason for the lack of virus replication in endothelial cells. In our work, in addition to nanomechanical measurements, we focused on the analysis of some cellular cytoskeleton proteins. In general, cellular cytoskeletal proteins play an important role in viral infection of a cell. Some viruses recruit cytoskeletal proteins from the host cell for intracellular trafficking to move around in the cytoplasm much more quickly than could be accomplished by diffusion alone. [ 38 – 41 ] In this work, we focus on the two cytoskeleton proteins - actin and vimentin and also one of the proteins that regulate the structure of the cytoskeleton - RhoA, which have an impact on the nanomechanical properties of cells and contributes to the life cycles of virus. First, actin forms filaments that provide cells with mechanical support and contribute to biological processes such as mechanosensitivity, internalizing membrane vesicles, and cellular movement and communication. [ 42 ] In endothelial cells, in addition to the above functions, actin is responsible for maintaining the impermeability of the endothelial barrier. [ 43 ] Reorganization of the actin cytoskeleton is strongly related to changes in the nanomechanical properties of cells and occurs under the influence of various pathological factors. [ 44 ] The SARS-CoV-2 virus also uses actin in its replication cycle, hijacking the actin fibers network for moving to replication sites. In this work, we have shown that infection caused by the SARS-CoV-2 virus significantly changes the actin cytoskeleton. In the case of A549 +/+ cells, these changes lead to a decrease in the number of actin filaments for longer p.i. times. This result is consistent with previously published data [ 45 ] indicating that efficient replication in A549 +/+ cells reduces the number of F-actin filaments. Simultaneously, after 2 h p.it the significant increase in the F-actin content in A549 +/+ cells shown in our work indicates the contribution of actin filaments in the movement of the virus in the cytoplasm. For endothelial cells, the results obtained indicate a significant increase in F-actin polymerization stimulated by SARS-CoV-2 virus infection. Although for 2 h p.i. in HPAECs the actin content increases, similarly to A549 +/+ , for longer times p.i. the actin content also remains at a high level. This result correlates with the measurement of elasticity and, at the same time, indicates the progression of endothelial cell dysfunction and an increase in the permeability of the endothelial barrier. We speculate that actin polymerization occurring in HPAECs is one of the reasons for the inhibition of virus replication. Additionally, in HPAECs infected with SARS-CoV-2 viruses, the RhoA protein content increases, confirming that a cellular response mechanism related to actin polymerization is activated in endothelial cells. RhoA proteins are responsible for actin polymerization, which in consequence leads to increased cellular stiffening. Importantly, in endothelial cells, an increase in the level of RhoA protein unbalances the production of vasodilating and vasoconstricting substances leading to the development of endothelial dysfunction. The other cytoskeleton protein strongly related to virus biology is vimentin, which is an intermediate filament cytoskeletal component that plays important roles in the regulation of cellular functions such as migration, response to inflammation, and immunity. Vimentin forms a dynamic, and elastic network surrounding the nucleus and it spreads radially to the cell membrane. Importantly, vimentin plays essential roles in coordinating intracellular signaling pathways, particularly, in endothelial cells vimentin modulates the production of NO as well as regulating the endothelial barrier function. [ 46 ] In the context of virus infection, vimentin plays an important role in virus entry and replication. Arrindell et al. [ 47 ] demonstrated a direct interaction between the SARS-CoV-2 spike protein, ACE2, and vimentin in epithelial cells. In this cell, cell surface vimentin works as a coreceptor for SARS-CoV-2 viruses and therefore increases viral entry and cytopathogenic effects. Our results confirm this effect showing a significant increase in the vimentin content in A549 +/+ cells correlated with effective replication. Interestingly, for HPAECs the vimentin content decreases, which may be a clue to explain the nonproductive SARS-CoV2 infection of endothelial cells. As shown, there is a relation between vimentin and RhoA activity. [ 48 ] Vimentin depletion promotes RhoA activity and actin stress fiber assembly. In our work, we showed that there is an anti-correlation between RhoA and vimentin in HPAECs. The increase in RhoA activity, resulting in polymerization and increased stiffness, correlates with a decrease in vimentin content in HPAECs. In this context, it can be concluded that the interaction of these two cytoskeletal proteins may influence the effectiveness of endothelial cells viral infection. ACE2 is the main receptor for the SARS coronaviruses family, which regulates the entry of those viruses into cells. In the case of A549 +/+ cells, the overexpression of ACE2 and TMPRSS indisputably increases the effectiveness of the infection and confirms the significant contribution of these receptors to epithelial infection by SARS-CoV-2. However, for endothelial cells, abortive infection may suggest the participation of other receptors, less specific. In the cardiac system, as shown by Clarke et al. [ 49 ] the ACE2 binds to integrin subunits that affect integrin-induced cell signaling. Cooperation between ACE2 and the integrin receptors could explain endothelial resistance to effective SARS-CoV-2 infection. Integrins play an important role in regulating cellular proliferation, migration, inflammation, and apoptosis. [ 50 ] The mechanism of integrin action is related to the expression of RhoA proteins, which are the main transducer of signals from plasma membrane receptors. [ 38 , 45 , 51 ] RhoA proteins mediate various cellular processes, including actin polymerization, stress fiber formation, cell contraction, and cell adhesion to the associated extracellular matrix. Furthermore, RhoA protein expression is correlated with an increase in Bcl-2 protein activity in HPAECs infected with SARS-CoV-2 (Fig. 3 e, Fig. 4 a-b). The published data indicate that the activation of the RhoA protein in endothelial cells blocks the mitochondrial apoptosis pathway due to Bcl-2 protein activation. [ 52 ] Bcl-2 also acts as an antioxidant in endothelial cells. The increase in Bcl-2 in infected HPAECs protects the endothelial cells against apoptosis and DNA damage. [ 53 – 56 ] Based on reports from the literature and our data, we assume that SARS-CoV-2 viruses bind to HPAECs by ACE2 or integrins, triggering the RhoA-dependent signaling pathway, which leads to actin polymerization and an increase in cell stiffness and permeability of the endothelial layer. [ 57 ] Moreover, as we have shown, the direct exposition of HPAECs on SARS-CoV-2 leads to the increase in the inflammation markers like ICAMs level, glycocalyx reduction, and increase of vWB factors (Fig. 4 ). The glycocalyx layer plays an important role in the maintenance of selective permeability of the endothelial barrier, modulates leukocyte adhesion, and influences the antithrombotic potential of the endothelial layer. Furthermore, loss of endothelial glycocalyx influences cytoskeleton changes and vice versa. [ 28 , 58 ] The reduction of the glycocalyx layer increases the adhesion of circulating cells and molecules to endothelial cells, therefore, increasing the probability of thrombus formation. [ 59 ] The obtained results were presented graphically as a proposed model for the course of SARS-CoV-2 infection in endothelial cells (Fig. 6 ). Finally, we observed differences in the endothelial response to infection with SARS-CoV-2 variants (Fig. 5 ). We showed that all tested SARS-CoV-2 variants (WT, Alpha, Beta and Delta) caused abortive infection in HPAECs. However, the differences in endothelial stiffness depending on the time post infection were noticed. An increase in this parameter was observed for all variants after 2 h p.i., and this trend continued in subsequent periods for the Alpha and Beta variants. In contrast, a decrease in endothelial stiffness over time was observed for the Delta variant. These results may suggest that the response of HPAEC cells to SARS-CoV-2 virus infection may depend on the virus variant, which in turn may translate into the pathophysiology of COVID-19 development and thus the consequences of infection. 4. Methods Cells and Viruses : A549 ( Homo sapiens ; lung epithelial cells; ATCC CCL-185) expressing ACE2 and TMPRSS2 (A549 +/+ ) was performed according to the standard method used lentivirus approach. [ 60 ] Cells were maintained in Dulbecco-modified Eagle's medium (DMEM, high glucose, ThermoFisher Scientific, Warszawa, Poland) supplemented with 5% heat-inactivated fetal bovine serum (FBS, ThermoFisher Scientific, Poland). The medium was also complemented with penicillin (100 U ml -1 , ThermoFisher Scientific, Warszawa, Poland) and streptomycin (100 µg ml -1 , ThermoFisher Scientific, Warszawa, Poland). Furthermore, blasticidin S (10 µg ml -1 , Sigma-Aldrich, St. Louis, MO, USA) and puromycin (0.5 µg ml -1 , Sigma-Aldrich, St. Louis, MO, USA) were added to the medium to maintain the expression of ACE2 and TMPRSS2. Vero cells ( Cercopithecus aethiops ; kidney epithelial; ATCC CCL-81) cells were maintained in DMEM supplemented with 3% FBS, 100 U/ml penicillin, and 100 µg ml -1 streptomycin. Cells were cultured at 37°C in a humid atmosphere containing 5% CO 2 . Every two weeks, cells were routinely tested for mycoplasma contamination. Primary Human Pulmonary Artery Endothelial Cells (HPAEC, ATCC PCS-100-022) were grown in Vascular Cell Basal Medium (Cat. No. PCS-100-030, ATCC), supplemented with Endothelial Cell Growth Kit-VEGF (Cat. No. PCS-100-041, ATCC). The medium was also completed with penicillin and streptomycin (10 mg/ml, Sigma-Aldrich, St. Louis, MO, USA). The SARS-CoV-2 strain isolated in house was used as a reference. The variant (B.1.13) is designated hCoV-19/Poland/PL_P7/2020 (GISAID accession code: EPI_ISL_428930). The Delta variant (B.1.617.2) was isolated from a sample obtained in May 2021 in the Czech Republic and is designated hCoV-19/Czech Republic/NRL_7102/2021 (GISAID accession code: EPI_ISL_2357738). The Alpha variant (B.1.1.7) was purchased from EVAg (Ref-SKU: 012V-04194), SARS-CoV-2, hCoV-19/Sweden/20-53840/2020. The Beta variant (B.1.351) was purchased from EVAg (Ref-SKU: 012V-04195), SARS-CoV-2/hCoV-19/Sweden/21-51217/2021.. All SARS-CoV-2 stocks were generated by infecting of Vero cell monolayer. The cells were incubated at 37°C under 5% CO 2 . The virus-containing medium was collected on day 2 post-infection (p.i.), aliquoted, and stored at − 80°C. Control samples from mock-inoculated cells were prepared in the same manner. Virus yields were assessed by titration on fully confluent cell layers in 96-well plates, according to the method of Reed and Muench. Plates were incubated at 37°C, and the cytopathic effect (CPE) was scored by observation through an inverted microscope. Viral Infection A549 +/+ and HPAEC cultures were seeded in a culture medium on 96-well plates (TPP, Trasadingen, Switzerland) 2 days before infection. Subconfluent cell layers were infected with SARS-CoV-2 viruses at 1600 50% tissue culture infectious dose (TCID 50 )/ml. After 2 h of incubation at 37°C, cells were rinsed twice with PBS, and a fresh medium was added. The infection was carried out for the next 48 h; supernatants and cells were collected after 2 h, 24 h, and 48 h p.i. Isolation of Nucleic Acids, Reverse Transcription, and Quantitative PCR : A viral DNA/RNA kit (A&A Biotechnology, Gdansk, Poland) was used for nucleic acid isolation from the cell culture supernatants and cells. RNA was isolated following the manufacturer's instructions. Viral RNA was quantified by the usage of quantitative PCR coupled with reverse transcription (RT-qPCR) (GoTaq Probe 1-Step RT-qPCR System, Promega, Poland), with CFX96 Touch real-time PCR detection system (Bio-Rad, Munich, Germany). The reaction was carried out in the presence of the primers and probe (Fwd: CAC ATT GGC ACC CGC AAT C; Rev: GAG GAA CGA GAA GAG GCT TG; probe: 6FAM-ACT TCC TCA AGG AAC AAC ATT GCC A-BHQ-1). The heating scheme was as follows: 15 min at 45°C and 2 min at 95°C, followed by 40 cycles of 15 s at 95°C and 1 min at 56°C. To assess the copy number of the N gene, standards were prepared. The PCR product was amplified and cloned into pTZ57R/T plasmids using an InsTAclone PCR cloning kit (Thermo Scientific). The resulting plasmid was linearized, and its concentration was assessed with a NanoDrop™ 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA); the number of copies was deducted based on the Avogadro constant. The obtained standards were serially diluted and used as input for RT-qPCR. Detection of SARS-CoV-2 N sg mRNA : Total nucleic acids were isolated from the virus- or mock-inoculated cells with Viral DNA/RNA Kit (A&A Biotechnology), following the protocol provided by the manufacturer. The TURBO DNase (Thermo Fisher Scientific, Poland) was added to the samples to remove the DNA contamination; the reaction was carried out for 15 min at 37°C, and subsequently, the enzyme was inactivated by 10 min incubation at 75°C in the presence of 10 mM EDTA (Thermo Fisher Scientific, Poland). Reverse transcription was performed using a high-capacity cDNA reverse transcription kit (Thermo Fisher Scientific, Poland), following the manufacturer's instructions. Viral cDNA was amplified in a 20 µl reaction mixture containing 1 × Dream Taq Green PCR master mix (Thermo Fisher Scientific), and primers (500 nM each). The following primers were used to amplify SARS-CoV-2 subgenomic mRNA (sg mRNA): forward primer TAT ACC TTC CCA GGT AAC AAA CCA; reverse primer - first PCR reaction GTA GCT CTT CGG TAG TAG CCA AT; reverse primer – second PCR reaction TCT TCC TTG CCA TGT TGA GTG A. The conditions were as follows: 3 min at 95°C, 35 cycles (30 cycles for 2nd PCR) of 30 s at 95°C, 30 s at 55°C, and 20 s at 72°C, followed by 5 min at 72°C and 10 min at 4°C. The PCR products were run on 1% agarose gels (1x Tris-acetate EDTA [TAE] buffer) and analyzed in the dedicated imaging software (Thermo Fisher Scientific). Cell preparation for AFM and confocal imaging HPAECs and A549 +/+ cells were seeded on a glass coverslip 48 h before the infection. Subconfluent cells were infected with all above-mentioned SARS-CoV-2 variants and after 2 h washed with PBS; the medium was refreshed. The infection was carried out for 2 h, 24 h, and 48 h, whereupon cells were fixed for 1 h with 3.7% paraformaldehyde (PFA) buffered with PHEM. Atomic Force Microscopy measurements All measurements were carried out using fixed cells in Hanks' Balanced Salt Solution (H8264, Sigma-Aldrich) as a measuring medium. All samples were mounted into a liquid cell (BioCell, JPK Instruments) under a stable temperature set at 37°C. The measurement was carried out using NanoWizard 3 NanoScience AFM (JPK Instruments). HPAEC and A549 +/+ cell AFM imaging was performed using pyramidal-shaped Pt-Ir coated cantilevers (SCM-PIC-V2, Bruker) with a nominal spring constant of 0.1 N/m. Images (256 × 256 pixels) were obtained at scan sizes of 4 µm × 4 µm, 20 µm × 20 µm (for B.1.13 variant) and 30 µm x 30 µm (for B.1.1.7, B.1.351 and B.1.617.2 variants). Topographical images were acquired with chosen force-distance (FD)-based imaging mode (QI; JPK Instruments), allowing for high-resolution imaging of fixed cells. In this method, a single FD-curve is measured in every pixel point of the image and translated from the selected trigger force into the images of cell topography. The loading force varied from 0.7 to 1.2 nN and was adjusted to obtain a clear contrast of the cell surface. The obtained images of topography were analyzed in JPK Data Processing Software. Fluorescence staining and imaging Fixed cells were permeabilized using 0.5% Tween-20 (13 min, room temperature [RT]), and unspecific binding sites were blocked with 5% bovine serum albumin (BSA) in PBS (4°C, overnight) prior to staining. Cells on coverslips were stained to visualize cellular and viral proteins. All antibodies used for immunostaining are listed in Table 1 . Table 1 Reagents and dyes used in the measurements. Antiobdy Provider Catalog number Dilution Conditions Mouse SARS-CoV-2 N protein antibody Thermo Fisher Scientific MA5-29981 1:200 2 h, RT Mouse Anti-ICAM-1/CD54 antibody Santa Cruz Biotechnology Sc-8439 1:500 1.5 h, RT MitoSOX™ Red Mitochondrial Superoxide indicator Molecular Probes M36008 1:1000 30 min, RT Anti-Rho A antibody conjugated with Alexa Fluor 647 dye Santa Cruz Biotechnology Sc-48 AF647 1:500 3 h, 4°C Bcl-2 monoclonal antibody conjugated with FITC dye Thermo Fisher Scientific A18153 1:500 45 min, RT Recombinant anti-vimentin antibody Abcam Ab92573 1:200 O/N, 4°C Anti-heparin sulfate primary antibody Amsbio 370255_S 1:100 O/N, 4°C Phalloidin conjugated with Alexa Fluor 647 dye Thermo Fisher Scientific A22287 1:400 25 min, RT Phalloidin conjugated with Alexa Fluor 488 dye Thermo Fisher Scientific A12379 1:400 25 min, RT Secondary antibody conjugated with Alexa Fluor 488 dye Thermo Fisher Scientific A-11001 1:400 1 h, RT Secondary antibody conjugated with Alexa Fluor 555 dye Thermo Fisher Scientific A21422 1:200 1 h, RT Secondary antibody conjugated with Alexa Fluor 546 dye Thermo Fisher Scientific A11003 1:500 1 h, RT vWB antibody Santa Cruz Biotechnology Sc-53466 1:500 1 h, RT m-IgGκ BP-CFL 594 Santa Cruz Biotechnology Sc-516178 1:500 1h, RT After incubating with each antibody, cells were washed thrice with 0.5% Tween-20 in PBS. Finally, the nuclear DNA was stained with 4', 6-diamidino-2-phenylindole (DAPI, 0.1 mg/ml, Sigma-Aldrich), washed, and mounted on glass slides with Prolong Diamond antifade mountant (P36970, Thermo Fisher Scientific, Poland). Samples were visualized using Zeiss LSM 710 confocal microscope and 40×/1.3 oil objective. Statistical analysis The AFM nanoindentation data were presented in the form of a box-plot. Each point in box-plot graphs represents the mean elasticity modulus (E) calculated for a single cell based on a log-normal distribution fit. Next, the mean values were calculated for each data points and groups (infected cells, mock and Ctrl) in order to compute the relative changes, relative to mock and Ctrl, based on the Eq. ( 1 ) $$Relative=\frac{{{I}_{i}^{SARS-CoV-2}}_{ }-{I}_{i}^{R}}{{I}_{i}^{R}}\times 100\%$$ 1 where \({I}_{i}^{SARS-CoV-2}\) are the means of elastic modulus for infected cells and \({I}_{i}^{R}\) are the means of elastic modulus mock cells or Ctrl cells after i ∈ {2,24,48} h of incubation. The absolute error of such measurements was calculated as a total differential of the Relative function. The fluorescence intensity data were analyzed in ImageJ software. For a single fluorescence image, the intensity was measured as a total value and normalized to the background value and a number of cells. Next, the mean fluorescence value was calculated based on all measured images, with SD as an error. To compare the data, the relative change was calculated based on the Eq. ( 2 ): $$Relative=\frac{{{I}_{i}^{SARS-CoV-2}}_{ }-{I}_{i}^{Mock}}{{I}_{i}^{Mock}}\times 100\%$$ 2 where \({I}_{i}^{SARS-CoV-2}\) and \({I}_{i}^{Mock}\) are the means s of fluorescence intensity for infected cells and mock cells after i ∈ {2,24,48} h of incubation. The absolute error of such measurements was calculated as a total differential of the Relative function. The statistical significance was tested with a one-way ANOVA (P < 0.05) followed by Tukey’s honest significant difference post-hoc test. All statistical analyses and graphs were prepared in Origin software. Declarations Acknowledgements The SARS-CoV-2 Delta variant (B.1.617.2) designated as hCoV-19/Czech Republic/NRL_7102/2021 (GISAID accession code: EPI_ISL_2357738). was kindly shared by Czech Republic National Institute of Public Health. The study was partially funded by "Research support module" (No. RSM/18/KA) as part of the "Excellence Initiative – Research University" program at the Jagiellonian University in Kraków (A. Kubisiak). Further, this work was supported by a subsidy from the Polish Ministry of Science and Higher Education for research on SARS-CoV-2 (K.P.), the DURABLE project, co-funded by the European Union, under the EU4Health Programme (EU4H) (https://health.ec.europa.eu/funding/eu4health-programme-2021-2027-vision-healthiereuropean-union_en#work-programmes) (K. Pyrc) Author Contributions A.K.: Conceptualization, Methodology, Validation, Data analysis, AFM and Fluorescence preparation and measurements, Writing, Funding acquisition; A.D.: Conceptualization, Methodology, Validation, PCR data analysis, Preparation of infected samples, Writing; P.B.: PCR data analysis, Preparation of infected samples; P.T.: Fluorescence data analysis; D.K.: Fluorescence preparation and measurements; T. K.: Fluorescence measurements; Z.R.: Fluorescence measurements, Resources; K.P.: Writing-Review and Editing, Supervision, Methodology, Data analysis, Resources; M.T.-K.: Conceptualization, Resources, Writing, Methodology, Data analysis, Supervision. All authors participated in Discussion. Competing interests The author(s) declare no competing interests. Data Availability The datasets used and/or analysed during the current study available from the corresponding author on reasonable request. References Gupta, P., Gupta, V., Singh, C. M. & Singhal, L. Emergence of COVID-19 Variants: An Update. Cureus (2023) Saberiyan, M. et al. SARS-CoV-2: phenotype, genotype, and characterization of different variants. Cell Mol Biol Lett 27, (2022). Ackermann, M. et al. Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19. New England Journal of Medicine 383, 120–128 (2020). Perico, L., Benigni, A. & Remuzzi, G. SARS-CoV-2 and the spike protein in endotheliopathy. Trends in Microbiology vol. 32 53–67, (2024). Nicosia, R. F., Ligresti, G., Caporarello, N., Akilesh, S. & Ribatti, D. COVID-19 Vasculopathy: Mounting Evidence for an Indirect Mechanism of Endothelial Injury. American Journal of Pathology vol. 191 1374–1384, (2021). Hattori, Y., Hattori, K., Machida, T. & Matsuda, N. Vascular endotheliitis associated with infections: Its pathogenetic role and therapeutic implication. Biochemical Pharmacology vol. 197, (2022). Barbosa, L. C., Gonçalves, T. L., de Araujo, L. P., Rosario, L. V. de O. & Ferrer, V. P. Endothelial cells and SARS-CoV-2: An intimate relationship. Vascul Pharmacol 137, (2021). Libby, P. & Lüscher, T. COVID-19 is, in the end, an endothelial disease. European Heart Journal vol. 41 3038–3044, (2020). Jin, Y. et al. Endothelial activation and dysfunction in COVID-19: from basic mechanisms to potential therapeutic approaches. Signal Transduction and Targeted Therapy vol. 5, (2020). Wang, P. et al. A cross-talk between epithelium and endothelium mediates human alveolar–capillary injury during SARS-CoV-2 infection. Cell Death Dis 11, (2020). Xu, S. wen, Ilyas, I. & Weng, J. ping. Endothelial dysfunction in COVID-19: an overview of evidence, biomarkers, mechanisms and potential therapies. Acta Pharmacologica Sinica vol. 44 695–709, (2023). Lang, J. et al. Inhibition of SARS pseudovirus cell entry by lactoferrin binding to heparan sulfate proteoglycans. PLoS One 6, (2011). Bernard, I., Limonta, D., Mahal, L. K. & Hobman, T. C. Endothelium infection and dysregulation by sars-cov-2: Evidence and caveats in covid-19. Viruses vol. 13, (2021). Pons, S., Fodil, S., Azoulay, E. & Zafrani, L. The vascular endothelium: The cornerstone of organ dysfunction in severe SARS-CoV-2 infection. Critical Care vol. 24, (2020). Nishiga, M., Wang, D. W., Han, Y., Lewis, D. B. & Wu, J. C. COVID-19 and cardiovascular disease: from basic mechanisms to clinical perspectives. Nature Reviews Cardiology vol. 17 543–558, (2020). Varga, Z. et al. Endothelial cell infection and endotheliitis in COVID-19. The Lancet vol. 395 1417–1418, (2020). Stüdle, C. et al. SARS-CoV-2 infects epithelial cells of the blood-cerebrospinal fluid barrier rather than endothelial cells or pericytes of the blood-brain barrier. Fluids Barriers CNS 20, (2023). Valdebenito, S. et al. COVID-19 Lung Pathogenesis in SARS-CoV-2 Autopsy Cases. Front Immunol 12, (2021). Jacobs, J. L. et al. Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcomes. Clinical Infectious Diseases 74, 1525–1533 (2022). Schimmel, L. et al. Endothelial cells are not productively infected by SARS-CoV-2. Clin Transl Immunology 10, (2021). Lee, M. H. et al. Neurovascular injury with complement activation and inflammation in COVID-19. Brain 145, 2555–2568 (2022). Buzhdygan, T. P. et al. The SARS-CoV-2 spike protein alters barrier function in 2D static and 3D microfluidic in-vitro models of the human blood–brain barrier. Neurobiol Dis 146, (2020). Rhea, E. M. et al. The S1 protein of SARS-CoV-2 crosses the blood–brain barrier in mice. Nat Neurosci 24, 368–378, (2021). Ma, Z., Yang, K. Y., Huang, Y. & Lui, K. O. Endothelial contribution to COVID-19: an update on mechanisms and therapeutic implications. J Mol Cell Cardiol 164, 69–82 (2022). Targosz-Korecka, M. et al. Endothelial glycocalyx shields the interaction of SARS-CoV-2 spike protein with ACE2 receptors. Sci Rep 11, (2021). Gressett, T. E. et al. Integrins as Therapeutic Targets for SARS-CoV-2. Front Cell Infect Microbiol 12, (2022). Targosz-Korecka, M. et al. AFM-based detection of glycocalyx degradation and endothelial stiffening in the db/db mouse model of diabetes. Sci Rep 7, (2017). Bar, A. et al. Degradation of Glycocalyx and Multiple Manifestations of Endothelial Dysfunction Coincide in the Early Phase of Endothelial Dysfunction Before Atherosclerotic Plaque Development in Apolipoprotein E/Low-Density Lipoprotein Receptor-Deficient Mice . J Am Heart Assoc 8, (2019). Szymonski, M., Targosz-Korecka, M. & Malek-Zietek, K. E. Nano-mechanical model of endothelial dysfunction for AFM-based diagnostics at the cellular level. Pharmacological Reports vol. 67 728–735, (2015). Kolodziejczyk, A. M., Brzezinka, G. D., Khurana, K., Targosz-Korecka, M. & Szymonski, M. Nanomechanical sensing of the endothelial cell response to anti-inflammatory action of 1-methylnicotinamide chloride. Int J Nanomedicine 8, 2757–2767, (2013). Targosz-Korecka, M., Brzezinka, G. D., Malek, K. E., Ste¸piéste¸pié, E. & Szymonski, M. Stiffness Memory of EA.Hy926 Endothelial Cells in Response to Chronic Hyperglycemia. Cardiovascular Diabetology vol. 12, (2013). Malek-Zietek, K. E., Targosz-Korecka, M. & Szymonski, M. The impact of hyperglycemia on adhesion between endothelial and cancer cells revealed by single-cell force spectroscopy. Journal of Molecular Recognition 30, (2017). Susnow, N., Zeng, L., Margineantu, D., & Hockenbery, D. M. Bcl-2 family proteins as regulators of oxidative stress. Seminars in cancer biology , 19(1), 42–49, (2009). Becker, B. F., Chappell, D., Bruegger, D., Annecke, T. & Jacob, M. Therapeutic strategies targeting the endothelial glycocalyx: Acute deficits, but great potential. Cardiovascular Research vol. 87 300–310, (2010). Lange, A., Lange, J. & Jaskuła, E. Cytokine Overproduction and Immune System Dysregulation in alloHSCT and COVID-19 Patients. Frontiers in Immunology vol. 12, (2021). Rajendran, P. et al. The vascular endothelium and human diseases. International Journal of Biological Sciences vol. 9 1057–1069, (2013). Fels, J., Callies, C., Kusche-Vihrog, K., & Oberleithner, H. Nitric oxide release follows endothelial nanomechanics and not vice versa. Pflugers Archiv : European journal of physiology , 460(5), 915–923, (2010). Wen, Z., Zhang, Y., Lin, Z., Shi, K. & Jiu, Y. Cytoskeleton - A crucial key in host cell for coronavirus infection. Journal of Molecular Cell Biology vol. 12 968–979, (2020). Spear, M. & Wu, Y. Viral exploitation of actin: Force-generation and scaffolding functions in viral infection. Virologica Sinica vol. 29 139–147, (2014). Dabrowska, A. et al. Reversible rearrangement of the cellular cytoskeleton: A key to the broad-spectrum antiviral activity of novel amphiphilic polymers. Mater Today Bio 22 , (2023). Bearer, E. L. & Satpute-Krishnan, P. The Role of the Cytoskeleton in the Life Cycle of Viruses and Intracellular Bacteria: Tracks, Motors, and Polymerization Machines. Current drug targets. Infectious disorders , 2(3), 247–264. (2002). Pollard, T. D. & Cooper, J. A. Actin, a central player in cell shape and movement. Science vol. 326 1208–1212, (2009). Dugina, V. B., Shagieva, G. S., Shakhov, A. S. & Alieva, I. B. The cytoplasmic actins in the regulation of endothelial cell function. International Journal of Molecular Sciences vol. 22, (2021). Papakonstanti, E. A. & Stournaras, C. Cell responses regulated by early reorganization of actin cytoskeleton. FEBS Letters vol. 582 2120–2127, (2008). Swain, J. et al. F-actin nanostructures rearrangements and regulation are essential for SARS-CoV-2 particle production in host pulmonary cells. iScience 26, (2023). Ridge, K. M., Eriksson, J. E., Pekny, M. & Goldman, R. D. Roles of vimentin in health and disease. Genes & development , 36(7-8), 391–407 (2022) Arrindell, J. et al. Vimentin is an important ACE2 co-receptor for SARS-CoV-2 in epithelial cells. iScience 25 , (2022). Jiu, Y. et al. Vimentin Intermediate Filaments Control Actin Stress Fiber Assembly through GEF-H1 and RhoA. Journal of cell science , 130(5), 892–902 (2017). Clarke, N. E., Fisher, M. J., Porter, K. E., Lambert, D. W. & Turner, A. J. Angiotensin converting enzyme (ACE) and ACE2 bind integrins and ACE2 regulates integrin signalling. PLoS One 7, (2012). Robles, J. P., Zamora, M., Martinez De La Escalera, G. & Clapp, C. The spike protein of SARS-CoV-2 induces endothelial inflammation through integrin α5β1 and NF-κB. The Journal of biological chemistry , 298(3), 101695, (2022) Kloc, M., Uosef, A., Wosik, J., Kubiak, J. Z. & Ghobrial, R. M. Virus interactions with the actin cytoskeleton—what we know and do not know about SARS-CoV-2. Archives of Virology vol. 167 737–749, (2022). Del Re, D. P., Miyamoto, S. & Brown, J. H. Focal adhesion kinase as a RhoA- activable signaling scaffold mediating activation and cardiomyocyte protection. Journal of Biological Chemistry 283 , 35622–35629 (2008). Florentini, C. et al. Toxin-induced activation of Rho GTP-binding protein increases Bcl-2 expression and influences mitochondrial homeostasis. Exp Cell Res 242 , 341–350 (1998). Kang, J. & Pervaiz, S. Crosstalk between Bcl-2 family and Ras family small GTPases: potential cell fate regulation? Frontiers in Oncology vol. 2 JAN (2013). Targosz-Korecka, M. et al. Stiffness changes of tumor HEp2 cells correlates with the inhibition and release of TRAIL-induced apoptosis pathways. in Journal of Molecular Recognition vol. 25 299–308 (2012). Wilson, A. J. et al. The DNA damage mark pH2AX differentiates the cytotoxic effects of small molecule HDAC inhibitors in ovarian cancer cells. Cancer Biol Ther 12 , 484–493 (2011). Szczygiel, A. M., Brzezinka, G., Targosz-Korecka, M., Chlopicki, S. & Szymonski, M. Elasticity changes anti-correlate with NO production for human endothelial cells stimulated with TNF-α. Pflugers Arch 463 , 487–496 (2012). Giergiel, M., Malek-Zietek, K. E., Konior, J. & Targosz-Korecka, M. Endothelial glycocalyx detection and characterization by means of atomic force spectroscopy: Comparison of various data analysis approaches. Micron 151, (2021). Stȩpien, E. et al. Circulating ectosomes: Determination of angiogenic microRNAs in type 2 diabetes. Theranostics 8 , 3874–3890 (2018). Synowiec, A. et al. Identification of cellular factors required for sars-cov-2 replication. Cells 10, (2021). Additional Declarations No competing interests reported. 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Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-4582723","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":321064839,"identity":"d6064039-6667-4ad5-9c9f-2d46f7653160","order_by":0,"name":"Agata Kubisiak","email":"data:image/png;base64,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","orcid":"","institution":"Jagiellonian University","correspondingAuthor":true,"prefix":"","firstName":"Agata","middleName":"","lastName":"Kubisiak","suffix":""},{"id":321064842,"identity":"568c33d9-6e15-457f-abba-20fdf1ade07c","order_by":1,"name":"Agnieszka Dabrowska","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Agnieszka","middleName":"","lastName":"Dabrowska","suffix":""},{"id":321064843,"identity":"b30cc501-6f99-40ac-a5a6-b758e630692f","order_by":2,"name":"Pawel Botwina","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Pawel","middleName":"","lastName":"Botwina","suffix":""},{"id":321064846,"identity":"7686ee20-264c-4bf5-af88-2bab5bd22bda","order_by":3,"name":"Patrycja Twardawa","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Patrycja","middleName":"","lastName":"Twardawa","suffix":""},{"id":321064847,"identity":"d8f77d75-523c-4052-b8d2-4c98e927671e","order_by":4,"name":"Damian Kloska","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Damian","middleName":"","lastName":"Kloska","suffix":""},{"id":321064848,"identity":"93ae37f9-2ec6-4abf-8216-84a56b866c76","order_by":5,"name":"Tomasz Kołodziej","email":"","orcid":"","institution":"Jagiellonian University Medical College","correspondingAuthor":false,"prefix":"","firstName":"Tomasz","middleName":"","lastName":"Kołodziej","suffix":""},{"id":321064849,"identity":"aff06854-603b-4409-8031-da9b29be8837","order_by":6,"name":"Zenon Rajfur","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Zenon","middleName":"","lastName":"Rajfur","suffix":""},{"id":321064850,"identity":"645b00a9-ca6a-488b-8a58-e7953d0a7d27","order_by":7,"name":"Krzysztof Pyrc","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Krzysztof","middleName":"","lastName":"Pyrc","suffix":""},{"id":321064851,"identity":"8c750d00-aad6-4376-a505-7c73dfa24b42","order_by":8,"name":"Marta Targosz-Korecka","email":"","orcid":"","institution":"Jagiellonian University","correspondingAuthor":false,"prefix":"","firstName":"Marta","middleName":"","lastName":"Targosz-Korecka","suffix":""}],"badges":[],"createdAt":"2024-06-14 14:36:01","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-4582723/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-4582723/v1","draftVersion":[],"editorialEvents":[{"content":"https://doi.org/10.1038/s41598-024-80351-z","type":"published","date":"2024-11-30T15:57:48+00:00"}],"editorialNote":"","failedWorkflow":false,"files":[{"id":59500257,"identity":"e1b616b0-3d04-4f4c-be33-380f5a63fd37","added_by":"auto","created_at":"2024-07-02 14:02:42","extension":"png","order_by":1,"title":"Figure 1","display":"","copyAsset":false,"role":"figure","size":3595704,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003eAssessment of SARS-CoV-2 (WT) replication in A549\u003c/strong\u003e\u003csup\u003e\u003cstrong\u003e+/+\u003c/strong\u003e\u003c/sup\u003e\u003cstrong\u003e cells and HPAECs a)\u003c/strong\u003e The graphs show the RT-qPCR results indicating the virus yield in the SARS-CoV-2 infected (5,000 TCID\u003csub\u003e50\u003c/sub\u003e/ml) A549\u003csup\u003e+/+\u003c/sup\u003e cells (lysates and supernatants) collected at 2, 24 and 48 h p.i.. The results are presented as average values with standard deviations (error bars). \u003cstrong\u003eb)\u003c/strong\u003e PCR analysis of subgenomic mRNA present in A549\u003csup\u003e+/+\u003c/sup\u003e cells obtained in cells infected with SARS-CoV-2 at 5,000 TCID\u003csub\u003e50\u003c/sub\u003e/ml and collected at 2, 24, and 48 h p.i. Mock-inoculated cells were used as a negative control, while the inoculum was used as a positive control. The PCR products were visible around 250 bp as expected. \u003cstrong\u003e(c,d\u003c/strong\u003e) Representative immunofluorescence images of actin filaments, nucleocapsid protein (NP), and nucleus\u0026nbsp; were obtained for A549\u003csup\u003e+/+ \u003c/sup\u003ecells infected with SARS-CoV-2 (\u003cstrong\u003ec)\u003c/strong\u003e or mock-inoculated (\u003cstrong\u003ed\u003c/strong\u003e). Merged panels (upper row) and separate (bottom row).\u0026nbsp; Appropriate analysis as for A549\u003csup\u003e+/+\u003c/sup\u003e was performed for HPAECs cells infected with the SARS-CoV-2 virus i.e.: \u003cstrong\u003ee\u003c/strong\u003e) virus yield in the cells lysates and supernatants, \u003cstrong\u003ef\u003c/strong\u003e) PCR analysis of sg mRNA present in HPAECs, (\u003cstrong\u003eg,h\u003c/strong\u003e) immunofluorescence images of actin filaments, nucleocapsid protein (NP) and nucleus obtained for infected HPAECs (\u003cstrong\u003eg\u003c/strong\u003e) and mock-inoculated (\u003cstrong\u003eh\u003c/strong\u003e). Actin filaments - red, nucleocapsid protein – green, nucleus – blue. Experiments were performed in at least two biological repetitions, each in triplicate. Fluorescence microscope images were collected on the Zeiss LSM 710 using 40×/1.3 oil objective.\u003c/p\u003e","description":"","filename":"Figure1.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/6f060a57a999850249cb0e31.png"},{"id":59500258,"identity":"40c5d7e0-52dd-43d2-ae97-4ce8a2077fe8","added_by":"auto","created_at":"2024-07-02 14:02:43","extension":"png","order_by":2,"title":"Figure 2","display":"","copyAsset":false,"role":"figure","size":4068127,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003ePost-infection changes of cellular elasticity and cytoskeleton structure.\u003c/strong\u003e \u003cstrong\u003e(a-h)\u003c/strong\u003e The nanomechanical analysis of A549\u003csup\u003e+/+\u003c/sup\u003e cells infected with SARS-CoV-2 (WT): \u003cstrong\u003e(a)\u003c/strong\u003e Box-plots depict the quantitative analysis of elastic moduli calculated for A549\u003csup\u003e+/+\u003c/sup\u003e cells after 2, 24, and 48 h p.i. and reference mock-inoculated cells. All measurements were performed using fixed cells. Each point in the box plot represents the mean value of E calculated for a single cell. The graph on the right represents the relative changes of E with respect to mock. \u003cstrong\u003e(b)\u003c/strong\u003e Representative AFM maps of height (top row) and E (bottom row) were taken for A549\u003csup\u003e+/+\u003c/sup\u003e cells infected with SARS-CoV-2 and mock-inoculated (representative images for 24 h p.i.). \u003cstrong\u003e(c)\u003c/strong\u003e Representative fluorescence images of A549\u003csup\u003e+/+\u003c/sup\u003e stained for F-actin. The top rows represent mock images, and the bottom row represents the images taken for infected A549\u003csup\u003e+/+\u003c/sup\u003e. \u003cstrong\u003e(d)\u003c/strong\u003e Quantification of phalloidin intensity showed as relative changes to mock. Appropriate nanomechanical analysis obtained for HPAECs are shown in \u003cstrong\u003e(e-h) \u003c/strong\u003epanel. \u003cstrong\u003e(e)\u003c/strong\u003e The quantitative analysis of elastic moduli for infected and mock HPAECs. On the right graph of the relative changes of E to mock. (f) Representative AFM maps of height (top row) and E (bottom row) taken for HPAECs. \u003cstrong\u003e(g)\u003c/strong\u003e Representative fluorescence images of HPAECs stained for F-actin. The top row represents mock images and the bottom row represents the images taken for HPAECs after 2, 24, and 48 h p.i.. The white arrows mark the characteristic gaps formation in the endothelial layer. \u003cstrong\u003e(h)\u003c/strong\u003e Quantification of phalloidin intensity presented as relative changes to mock cells. F-actin – green. All measurements were made for fixed cells. Statistics: p values were determined by one-way ANOVA followed by Tukey's post-hoc test, with significance marked as (*): p\u0026lt;0.05; (**): p\u0026lt;5E-3; (***): p\u0026lt;5E-6. The Fig. was created with OriginPro2022.\u003c/p\u003e","description":"","filename":"Figure2.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/0c52d8a07465bbfd993062b6.png"},{"id":59500253,"identity":"e7f431ca-a81b-42ba-b33f-41ab445b0047","added_by":"auto","created_at":"2024-07-02 14:02:42","extension":"png","order_by":3,"title":"Figure 3","display":"","copyAsset":false,"role":"figure","size":3407193,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003eAnti-correlation between the RhoA and vimentin expression in SARS-CoV-2 (B.1.13 variant) infected cells. a)\u003c/strong\u003e Representative fluorescence images of A549\u003csup\u003e+/+\u003c/sup\u003e cells stained for a) RhoA protein and \u003cstrong\u003eb)\u003c/strong\u003e vimentin taken for subsequent post infection times: 2 h, 24 h and 48 h. \u003cstrong\u003ec) \u003c/strong\u003eQuantification of RhoA staining intensity in A549\u003csup\u003e+/+\u003c/sup\u003e presented as box-plot of mean intensity values per image normalized to the number of cells (left) and relative changes of intensity to mock (right). \u003cstrong\u003ed)\u003c/strong\u003e\u0026nbsp; Quantification of vimentin staining intensity presented as box-plot of mean intensity values (left) and relative changes of intensity to mock (right). The results obtained for HPAECs are shown in \u003cstrong\u003e(e-h) \u003c/strong\u003epanel. \u003cstrong\u003ee)\u003c/strong\u003e Representative fluorescence images of RhoA and \u003cstrong\u003ef)\u003c/strong\u003e vimentin and corresponding \u003cstrong\u003e(g-h)\u003c/strong\u003e quantification of fluorescence intensity for \u003cstrong\u003eg)\u003c/strong\u003e RhoA and \u003cstrong\u003eh)\u003c/strong\u003e vimentin. Rho-A – red, vimentin - yellow. Statistics: p values were determined by one-way ANOVA followed by Tukey’s’ post-hoc test, prepared in Origin software. The statistical significance was marked as: (*): p\u0026lt;0.05, (**): p\u0026lt;5E-3, (***): p\u0026lt;5E-6.\u003c/p\u003e","description":"","filename":"Figure3.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/5b0658dd22ef8b5e1cc13fef.png"},{"id":59500254,"identity":"f1b357e7-1217-484c-b064-aab6c486029b","added_by":"auto","created_at":"2024-07-02 14:02:42","extension":"png","order_by":4,"title":"Figure 4","display":"","copyAsset":false,"role":"figure","size":2033491,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003eMarkers of HPAECs dysfunction. \u003c/strong\u003e\u003cem\u003eMitochondrial homeostasis \u003c/em\u003epanel represents \u003cbr\u003e\nBcl-2 protein and MitoSox analysis performed for HPAECs infected with SARS-CoV-2 (WT). (\u003cstrong\u003ea,c)\u003c/strong\u003e Representative images of Bcl-2 (\u003cstrong\u003ea\u003c/strong\u003e) and MitoSox (\u003cstrong\u003ec\u003c/strong\u003e). Mock image was taken for 24 h post inoculation. (\u003cstrong\u003eb,d)\u003c/strong\u003eQuantitative analysis of the fluorescence intensity. Data shown as a relative value to the reference measurements, i.e. ock 2 h,24 h, and 48 h. Mock image was taken for 24 h post inoculation. Bcl-2 -green; MitoSOX – red. \u003cem\u003eMarkers of ECs dysfunction \u003c/em\u003epanel shows the post-infection analysis of ICAM-1 molecule, glycocalyx layer (heparan sulfate, HS), and vWB performed for HPAECs. Fluorescent images of ICAM-1 molecule \u003cstrong\u003e(e)\u003c/strong\u003e, glycocalyx coverage \u003cstrong\u003e(g),\u003c/strong\u003eand vWB \u003cstrong\u003e(i)\u003c/strong\u003e were taken for 2 h, 24 h, and 48 h post infection times. Depicted mock image was taken for 24 h post inoculation. Relative changes of fluorescence intensity of ICAM-1 \u003cstrong\u003e(f)\u003c/strong\u003e, glycocalyx \u003cstrong\u003e(h),\u003c/strong\u003e and vWB \u003cstrong\u003e(j)\u003c/strong\u003eto the reference measurements, i.e. mock 2 h, 24 h, and \u0026nbsp;48 h. ICAM-1 – green; glycocalyx (HS) – yellow, vWB – red. Statistics: p values were determined by one-way ANOVA followed by Tukey’s post-hoc test, prepared in Origin software. The statistical significance was marked as: (*): p\u0026lt;0.05, (**): p\u0026lt;5E-3, (***): p\u0026lt;5E-6.\u003c/p\u003e","description":"","filename":"Figure4.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/9e0614d3627070feff58a73c.png"},{"id":59500256,"identity":"e859af2f-a86a-42ea-a2da-00d671018ed7","added_by":"auto","created_at":"2024-07-02 14:02:42","extension":"png","order_by":5,"title":"Figure 5","display":"","copyAsset":false,"role":"figure","size":970432,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003ePost-infection changes of HPAECs elasticity and virus replication measured for HPAECs infected with SARS-CoV-2 variants\u003c/strong\u003e. \u003cstrong\u003e(a-d)\u003c/strong\u003e \u003cem\u003eAlpha variant (B.1.1.7)\u003c/em\u003e: (\u003cstrong\u003ea\u003c/strong\u003e) Box-plot depicts the quantitative analysis of elastic moduli (E) calculated for HPAECs after 2 h, 24 h, and 48 h of p.i., reference mock-inoculated HPAECs and non-infected control HPAECs (Ctrl). All measurements were performed for fixed cells. Each point in the box plot represents the mean value of E calculated for a single cell. \u003cstrong\u003e(b) \u003c/strong\u003eThe relative changes of E of infected cells relative to mock (blue) and relative to Ctrl (gray). \u003cstrong\u003e(c-d) \u003c/strong\u003eThe graphs show the number of virus RNA copies present in the cells lysate and supernatants collected from HPAECs infected with SARS-CoV-2 variant Alpha at 5,000 TCID\u003csub\u003e50\u003c/sub\u003e/ml and collected at 2, 24, and 48 h post-infection. The results are presented as average values with standard deviations (error bars). (\u003cstrong\u003ee-h\u003c/strong\u003e) \u003cem\u003eBeta variant (B.1.351)\u003c/em\u003e: \u003cstrong\u003e(e) \u003c/strong\u003eBox-plot of E calculated for HPAECs infected with SARS-CoV-2 Beta variant, mock-inoculated HPAECs and non-infected HPAECs (Ctrl). \u003cstrong\u003e(f)\u003c/strong\u003e The relative changes of E of infected cells to mock (blue) and relative to Ctrl (gray). \u003cstrong\u003e(g,h)\u003c/strong\u003e The graphs show the number of virus RNA copies present in the cell’s lysate and supernatants. \u003cstrong\u003e(i-l)\u003c/strong\u003e \u003cem\u003eDelta variant (B.1.617.2)\u003c/em\u003e: (\u003cstrong\u003ei\u003c/strong\u003e) Box-plot of E calculated for HPAECs infected with SARS-CoV-2 Delta variant, mock-inoculated HPAECs and non-infected HPAECs (Ctrl). \u003cstrong\u003e(j)\u003c/strong\u003e The relative changes of E of infected cells relative to mock (blue) and relative to Ctrl (gray).\u0026nbsp; \u003cstrong\u003e(k-l)\u003c/strong\u003e The graphs show the number of virus RNA copies present in the cell’s lysate and supernatants.\u0026nbsp; Statistics: p values were determined by one-way ANOVA followed by Tukey's post-hoc test, with significance marked as (*): p\u0026lt;0.05; (**): p\u0026lt;5E-3; (***): p\u0026lt;5E-6. The Fig. was created with OriginPro2022\u003c/p\u003e","description":"","filename":"Figure5.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/4534a139f45b646a9e4b5549.png"},{"id":59500974,"identity":"4440911b-9e0f-41ba-b2af-b98363932454","added_by":"auto","created_at":"2024-07-02 14:10:42","extension":"png","order_by":6,"title":"Figure 6","display":"","copyAsset":false,"role":"figure","size":1053967,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cstrong\u003eProposed model of the course of SARS-CoV-2 infection in A549+/+ cells and HPAECs.\u003c/strong\u003e Graphical summary of the results obtained indicating differences in the course of the SARS-CoV-2 infection process in epithelial cells (A549\u003csup\u003e+/+\u003c/sup\u003e) and endothelial cells along with the dysfunctions occurring in HPAECs. The figure was created with BioRender.com\u003c/p\u003e","description":"","filename":"Figure6.png","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/8ef8db0df296fb00b77d5308.png"},{"id":70382789,"identity":"da34d449-1dbe-4cfa-8539-61e3df1afb3e","added_by":"auto","created_at":"2024-12-02 16:31:07","extension":"pdf","order_by":0,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":18169194,"visible":true,"origin":"","legend":"","description":"","filename":"manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-4582723/v1/19fa8e4e-84e3-4725-9349-0a3c1e0ce28c.pdf"}],"financialInterests":"No competing interests reported.","formattedTitle":"Remodeling of Intracellular Architecture During SARS-CoV-2 Infection of Human Endothelium","fulltext":[{"header":"1. Introduction","content":"\u003cp\u003eSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that causes coronavirus disease 2019 (COVID-19) promoted the pandemic not seen after the Spanish flu in the beginning of previous century. Extremely high number of cases created a convenient platform for virus evolution and resulted in the rapid emergence of several genetic variants of the SARS-CoV-2. The first three named Alpha (B.1.1.7), Beta (B.1.351), and Delta (B.1.617.2), although they have the same origin, differ in transmissibility and/or severity of the associated disease.\u003csup\u003e[\u003cspan citationid=\"CR1\" class=\"CitationRef\"\u003e1\u003c/span\u003e, \u003cspan citationid=\"CR2\" class=\"CitationRef\"\u003e2\u003c/span\u003e]\u003c/sup\u003e\u003c/p\u003e \u003cp\u003eThe available data unquestionably point to the significant role of the endothelium in the development of the severe course of COVID-19 and the long COVID.\u003csup\u003e[\u003cspan additionalcitationids=\"CR4\" citationid=\"CR3\" class=\"CitationRef\"\u003e3\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR5\" class=\"CitationRef\"\u003e5\u003c/span\u003e]\u003c/sup\u003e In most cases, endothelial dysfunction is described as an abnormal cellular phenotype in which vascular balance shifts to vasoconstriction and inflammation. The clinical signs of endotheliitis and vasculitis are reported as post-infection complications that may appear in a wide range of organs, including the kidney, heart, small intestine, lung, and skin\u003csup\u003e[\u003cspan citationid=\"CR6\" class=\"CitationRef\"\u003e6\u003c/span\u003e]\u003c/sup\u003e. This further supports the observation that COVID-19 is a systemic disease affecting the endothelial compartment.\u003csup\u003e[\u003cspan additionalcitationids=\"CR8\" citationid=\"CR7\" class=\"CitationRef\"\u003e7\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR9\" class=\"CitationRef\"\u003e9\u003c/span\u003e]\u003c/sup\u003e However, the biomechanical understanding of this process remains unclear.\u003csup\u003e[\u003cspan citationid=\"CR9\" class=\"CitationRef\"\u003e9\u003c/span\u003e, \u003cspan citationid=\"CR10\" class=\"CitationRef\"\u003e10\u003c/span\u003e]\u003c/sup\u003e\u003c/p\u003e \u003cp\u003eA distinction is made between direct and indirect causes of the development of endothelial dysfunction. The former is related to the direct consequences of infection, while the latter is the result of endothelial exposure to cytokines (cytokine storm).\u003csup\u003e[\u003cspan citationid=\"CR11\" class=\"CitationRef\"\u003e11\u003c/span\u003e]\u003c/sup\u003e Local and systemic inflammation that characterizes COVID-19 activates and damages the endothelium, resulting in an elevation of von Willebrand factor (vWB) in the blood, making the vasculature more susceptible to thrombotic events.\u003csup\u003e[\u003cspan additionalcitationids=\"CR13 CR14\" citationid=\"CR12\" class=\"CitationRef\"\u003e12\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR15\" class=\"CitationRef\"\u003e15\u003c/span\u003e]\u003c/sup\u003e However, the tissue is also considered the infection site. In postmortem tissue evaluation, Varga\u003csup\u003e[\u003cspan citationid=\"CR16\" class=\"CitationRef\"\u003e16\u003c/span\u003e]\u003c/sup\u003e and others\u003csup\u003e[\u003cspan citationid=\"CR17\" class=\"CitationRef\"\u003e17\u003c/span\u003e, \u003cspan citationid=\"CR18\" class=\"CitationRef\"\u003e18\u003c/span\u003e]\u003c/sup\u003e identified viral content in blood vessels and blood. A report by Jacobs et al.\u003csup\u003e[\u003cspan citationid=\"CR19\" class=\"CitationRef\"\u003e19\u003c/span\u003e]\u003c/sup\u003e published in 2022 refers to the clinical study that proves the occurrence of viral proteins in the plasma of patients with COVID-19. The authors indicate the correlation of viremia with disease severity, its outcome, and specific inflammatory biomarkers.\u003c/p\u003e \u003cp\u003eWhile virus particles and virus RNA have been found in the blood and endothelial tissues and we know that the SARS-CoV-2 virus can cause abortive infection of the human endothelium, the consequences of the interaction between virus and endothelium in the clinic remain to be elucidated.\u003csup\u003e[\u003cspan citationid=\"CR20\" class=\"CitationRef\"\u003e20\u003c/span\u003e]\u003c/sup\u003e Some autopsy-based studies following COVID-19 have shown multifocal vascular damage, as well as activation of endothelial cells.\u003csup\u003e[\u003cspan citationid=\"CR21\" class=\"CitationRef\"\u003e21\u003c/span\u003e]\u003c/sup\u003e Furthermore, among the etiological factors of the observed endothelial dysfunction, pro-inflammatory cytokines produced during COVID-19 were reported. Buzhdygan et al.\u003csup\u003e[\u003cspan citationid=\"CR22\" class=\"CitationRef\"\u003e22\u003c/span\u003e]\u003c/sup\u003e have shown that the SARS-CoV-2 spike protein promotes the loss of integrity of the endothelial barrier and increases endothelial inflammation and permeability due to modulation of the renin-angiotensin pathway, potentially affecting the function of the blood-brain barrier. Similarly, Rhea et al.\u003csup\u003e[\u003cspan citationid=\"CR23\" class=\"CitationRef\"\u003e23\u003c/span\u003e]\u003c/sup\u003e show that virus-induced structural remodeling of the endothelial tissue results in increased permeability of the blood-brain barrier to the virus. It is also known that the spike protein, which protrudes from the surface of the virus particle, interacts with the angiotensin-converting enzyme 2 (ACE2) protein, which acts as a cellular receptor.\u003csup\u003e[\u003cspan citationid=\"CR24\" class=\"CitationRef\"\u003e24\u003c/span\u003e]\u003c/sup\u003e Moreover, our recent study\u003csup\u003e[\u003cspan citationid=\"CR25\" class=\"CitationRef\"\u003e25\u003c/span\u003e]\u003c/sup\u003e showed that ACE2 is present on the surface of HPAEC cells, hence these cells should become permissive for SARS-CoV-2, however, for efficient infection several other factors such as TMPRSS2 are required. Importantly, an increasing number of scientific reports also indicate the potential role of integrins as SARS-CoV-2 co-receptors in the endothelium.\u003csup\u003e[\u003cspan citationid=\"CR26\" class=\"CitationRef\"\u003e26\u003c/span\u003e]\u003c/sup\u003e\u003c/p\u003e \u003cp\u003eIn this work, we hypothesized that endothelial nanomechanics play an important role in the initiation and progression of endothelial dysfunction during SARS-CoV-2 infection. Nanomechanical properties of endothelial cells such as cellular elasticity/stiffness constitute an important part of the endothelial phenotype and their alteration is a starting point of endothelial dysfunction development.\u003csup\u003e[\u003cspan additionalcitationids=\"CR28\" citationid=\"CR27\" class=\"CitationRef\"\u003e27\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR29\" class=\"CitationRef\"\u003e29\u003c/span\u003e]\u003c/sup\u003e As we have shown in previous works, the early response of endothelial cells to pathological factors (e.g., proinflammatory cytokines, high glucose) is associated with increased cell stiffness and actin cytoskeleton remodeling, resulting in decreases in nitric oxide (NO) production and activation of the inflammatory pathway.\u003csup\u003e[\u003cspan additionalcitationids=\"CR31\" citationid=\"CR30\" class=\"CitationRef\"\u003e30\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR32\" class=\"CitationRef\"\u003e32\u003c/span\u003e]\u003c/sup\u003e Consequently, nanomechanical changes occurring in endothelial cells contribute to the development of vascular dysfunction, atherosclerosis, and hypertension and ultimately cause serious systemic complications.\u003csup\u003e[\u003cspan citationid=\"CR29\" class=\"CitationRef\"\u003e29\u003c/span\u003e]\u003c/sup\u003e\u003c/p\u003e \u003cp\u003eIn our study, we evaluate the nanomechanical response of human pulmonary artery endothelial cells (HPAECs) and A549 epithelial cell line expressing ACE2 and TMPRSS2 (A549\u003csup\u003e+/+\u003c/sup\u003e) infected with SARS-CoV-2 highlighting the important role of virus variability (WT, Alpha, Beta, Delta) in the course of the nanomechanical changes. We have analyzed cell topography correlated with cell elasticity maps by using the atomic force microscopy (AFM) method completed by fluorescence microscopy and quantitative PCR coupled with reverse transcription (RT-qPCR) analysis.\u003c/p\u003e"},{"header":"2. Results","content":"\u003cdiv id=\"Sec3\" class=\"Section2\"\u003e \u003ch2\u003e2.1. SARS-CoV-2 induces abortive infection in HPAEC cells\u003c/h2\u003e \u003cp\u003eA549\u003csup\u003e+/+\u003c/sup\u003e and HPAEC cells were infected with the SARS-CoV-2 virus. At 2, 24, and 48 h post infection (p.i.), the supernatant and cells were collected for RT-qPCR and sg mRNA analysis, and the cells were fixed. Detection of sg mRNA was carried out to confirm active viral replication, because once the virus enters cells, replication of the viral genome and production of sg mRNA begins. Human lung adenocarcinoma A549\u003csup\u003e+/+\u003c/sup\u003e cells are a permissive for SARS-CoV-2 virus infection and were used as a positive control. We confirmed the efficient replication in A549\u003csup\u003e+/+\u003c/sup\u003e cells by RNA quantification (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003ea), the presence of viral sg mRNA (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eb), and by the nucleocapsid protein detection (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003ec-d). The same techniques were used to confirm infection in HPAEC cells; SARS-CoV-2 virus does not replicate productively in the cells tested, as indicated by RT-qPCR analysis (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003ee\u003cb\u003e)\u003c/b\u003e; however, the presence of sg mRNA indicates that the genome replication occurs (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003ef). In addition, using an immunostaining method, virus particles (indicated by white arrows) were labeled after 2 and 24 h p.i. (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eg-h). The results consistently indicate the abortive infection of SARS-CoV-2 in HPAEC cells.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec4\" class=\"Section2\"\u003e \u003ch2\u003e2.2 Impact of SARS-CoV-2 infection on the nanomechanical properties of A549\u003csup\u003e+/+\u003c/sup\u003e cells and HPAECs\u003c/h2\u003e \u003cp\u003eDifferences in the course of infection for A549\u003csup\u003e+/+\u003c/sup\u003e cells and HPAEC prompted us to perform nanomechanical measurements. Our aim was to check whether changes in elasticity were observed despite the lack of effective infection of HPAECs. Figure\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003e shows the results of the AFM nanomechanical measurements and actin cytoskeleton imaging obtained for A549\u003csup\u003e+/+\u003c/sup\u003e and HPAECs infected with SARS-CoV-2 in the following time points: 2, 24, and 48 h.\u003c/p\u003e \u003cp\u003eA549\u003csup\u003e+/+\u003c/sup\u003e cells showed a time-dependent, biphasic change of the \u003cem\u003eE\u003c/em\u003e values. After 2 h p.i., the values of E significantly increased for all measured cells in comparison to the mock sample, as shown on Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ea. For the subsequent timepoints (24 h and 48 h), a significant decrease in \u003cem\u003eE\u003c/em\u003e value was observed. The relative changes plot shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ea indicates the percentage change in the \u003cem\u003eE\u003c/em\u003e parameter relative to mock. For 2 h p.i. times, the \u003cem\u003eE\u003c/em\u003e parameter increases by 44% compared to mock, while for the remaining times it decreases, reaching a drop of 42% after 48h p.i. The quantitative analysis of \u003cem\u003eE\u003c/em\u003e was supported by qualitative data visualization in a form of 2D AFM images of cells morphology correlated with distribution of \u003cem\u003eE\u003c/em\u003e parameters (elasticity maps), as showed in Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eb. By maintaining a constant range of \u003cem\u003eE\u003c/em\u003e values for all elasticity maps, a significant reduction of this parameter is shown with increasing time of p.i. and it is correlating with gradual injury to the cell structure. Observed nanomechanical changes are strengthened by fluorescence images of F-actin structure in infected cells (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ec) as well as quantitative analysis of fluorescence intensity of phalloidin (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ed). All together indicate progressive damage of the A549\u003csup\u003e+/+\u003c/sup\u003e cells after infection with SARS-CoV-2 occurring parallelly with a significant change in elasticity, and F-actin content.\u003c/p\u003e \u003cp\u003eHPAECs infected with SARS-CoV-2 also showed significant changes in cell stiffness and structure, which correlated with the remodeling of the actin cytoskeleton. At first, similar to the infected A549\u003csup\u003e+/+\u003c/sup\u003e cells, significant increase in cellular stiffness (96% relative to mock) has been observed at 2 h p.i. Additionally, for this timepoint, the AFM image and elasticity map (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ef) depict stiff membrane ripples on the cell surface, which leads to the conclusion that after infection there are changes in the perimembrane structures of the cell. After 24 h p.i, the values of E measured for subsequent cells did not change significantly relative to values obtained for 2 h p.i, as depicted in Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ee. However, in relation to mock, the infected HPAECs are significantly stiffer. The AFM image shows some structural changes in the cell membrane, and the elasticity map depicts a highly crosslinked actin network under the cell membrane. Observed changes indicate that infection with SARS-CoV-2 involves the cytoskeletal remodeling in HPAECs. This hypothesis is confirmed by result noted after 48 h p.i. For this time-point, further significant increase in cellular stiffness was proven by quantitative analysis of the cellular E (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ee) and qualitative analysis of AFM images (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ef) showing a stiff cortex covering the cell body. The fluorescence analysis depicts in Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eg and \u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eh validate the AFM results, showing increase F-actin content in HPAECs infected with SARS-CoV-2. Moreover, the graph of relative changes (Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003ee) highlights changes in relation to mock, indicating that the most significant increase in stiffness occurs after 48 h. Moreover, the presented increase in stiffness of HPAECs as well as the reorganization of the actin cytoskeleton leads to changes in endothelial layer structure, Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eg (bottom row), manifested by the loss of intercellular connections and the formation of characteristic gaps in the endothelial structure, suggesting an increase in the permeability of the endothelial layer. An increase in endothelial permeability and an increase in endothelial stiffness directly indicate the development of endothelial dysfunction caused by the SARS-CoV-2 virus.\u003c/p\u003e \u003cp\u003eTo address the question of the mechanism of the post infection cytoskeleton remodeling, we focused on RhoA proteins and vimentin playing important regulatory and transport roles in both epithelial and endothelial cells.\u003c/p\u003e \u003cp\u003eFigure\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003e shows the results of qualitative and quantitative analysis of fluorescence images obtained for RhoA protein and vimentin in A549\u003csup\u003e+/+\u003c/sup\u003e cells and HPAECs. Images were taken after 2 h, 24 h, and 48 h post infection and, as a reference, images were taken for mock for these same times points. In the case of A549\u003csup\u003e+/+\u003c/sup\u003e cells (Fig.\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003ea, c) it was noticed an initial increase in the RhoA protein content (2 h p.i.). However, for the following 24 h and 48 h, a significant decrease of RhoA protein content was observed. Interestingly, an increase in the amount of RhoA protein is accompanied by a decrease in the amount of vimentin and, conversely, a decrease in the amount of RhoA protein is associated with an increase in the amount of vimentin, as shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003eb, d.\u003c/p\u003e \u003cp\u003eA similar effect was noted for HPAECs. The results presented in Fig.\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003ee-h indicate an increase in the amount of RhoA protein at subsequent p.i. time points and, in parallel, for the same p.i. time points, the vimentin signal is decreasing. Obtained results indicate the important role of RhoA and vimentin in the course of response of epithelial and endothelial cells to SARS-CoV-2 infection.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e\n\u003ch3\u003e2. 3 Intracellular changes during SARS-CoV-2 infection in HPAECs.\u003c/h3\u003e\n\u003cp\u003eFor this section, we presented the results as a comparison of the effect of infection of epithelial and endothelial cells with the variant B.1.13 of SARS-CoV-2 virus. A549\u003csup\u003e+/+\u003c/sup\u003e cells were used as a model system. However, in this work, we ask about the impact of the virus on the nanomechanical properties of HPAECs and linking these changes with the endothelial cell's phenotype.\u003c/p\u003e \u003cp\u003eTo address this question, we performed fluorescence tests using selected markers of endothelial function. The results of the qualitative and quantitative analysis are shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003e. In particular, we assessed the mitochondrial homeostasis markers like expression of the anti-apoptotic protein Bcl-2 level and mitochondrial oxidative stress (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ea-d), as well as markers of endothelial dysfunction (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ee-j). Figure\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ea-b present the results of mitochondrial homeostasis markers showing an increase of Bcl-2 protein content with the increase of p.i time. Bcl-2 proteins, known as antiapoptotic proteins, confer cellular resistance to mitochondrial apoptosis and attenuate mitochondrial oxidative stress.\u003csup\u003e[\u003cspan citationid=\"CR33\" class=\"CitationRef\"\u003e33\u003c/span\u003e]\u003c/sup\u003e As shown (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ea-d) in infected HPAECs cells, a slight increase in mitochondrial reactive oxygen species was observed, which in turn we associate with an increase in Bcl-2 activity. Our result shows that after infection with the SARS-CoV-2 virus, a defense reaction develops in endothelial cells, protecting the cells against apoptosis.\u003c/p\u003e \u003cp\u003eThe next panel presenting the endothelial dysfunction markers (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ee-j) has shown that after infection with variant B.1.13 of SARS-CoV-2 virus in HPAECs develop an inflammatory response. The both qualitative (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ee, g, i) and quantitative (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ef, h, j) analysis, indicate a gradual increase in the number of ICAM-1 molecules, a reduction in the glycocalyx layer associated with the rapid increase in the von Willebrand factor were observed. An increase in the activity of ICAM-1 adhesion molecules (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ee, f), a standard marker of endothelial inflammation, indicates an increase in the adhesion of circulating leukocytes to the endothelium and a loss of integrity of the endothelial barrier. At the same time, the glycocalyx is reduced (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eg-h\u003cb\u003e)\u003c/b\u003e. The structure of this sugar-rich layer protects the endothelial cells against the adhesion of circulating blood cells\u003csup\u003e[\u003cspan citationid=\"CR34\" class=\"CitationRef\"\u003e34\u003c/span\u003e]\u003c/sup\u003e and viruses.\u003csup\u003e[\u003cspan citationid=\"CR25\" class=\"CitationRef\"\u003e25\u003c/span\u003e]\u003c/sup\u003e Its reduction enhances thrombosis and pro-thrombotic complications in blood vessels. In our work, we also noticed that glycocalyx reduction increases the expression of the vWB factor (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ei-j), which further promotes the development of vascular dysfunction and thrombosis.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cp\u003eBcl-2 protein and MitoSox analysis performed for HPAECs infected with SARS-CoV-2 (WT). (\u003cb\u003ea,c)\u003c/b\u003e Representative images of Bcl-2 (\u003cb\u003ea\u003c/b\u003e) and MitoSox (\u003cb\u003ec\u003c/b\u003e). Mock image was taken for 24 h post inoculation. (\u003cb\u003eb,d)\u003c/b\u003e Quantitative analysis of the fluorescence intensity. Data shown as a relative value to the reference measurements, i.e. ock 2 h,24 h, and 48 h. Mock image was taken for 24 h post inoculation. Bcl-2 -green; MitoSOX \u0026ndash; red. \u003cem\u003eMarkers of ECs dysfunction\u003c/em\u003e panel shows the post-infection analysis of ICAM-1 molecule, glycocalyx layer (heparan sulfate, HS), and vWB performed for HPAECs. Fluorescent images of ICAM-1 molecule \u003cb\u003e(e)\u003c/b\u003e, glycocalyx coverage \u003cb\u003e(g)\u003c/b\u003e, and vWB \u003cb\u003e(i)\u003c/b\u003e were taken for 2 h, 24 h, and 48 h post infection times. Depicted mock image was taken for 24 h post inoculation. Relative changes of fluorescence intensity of ICAM-1 \u003cb\u003e(f)\u003c/b\u003e, glycocalyx \u003cb\u003e(h)\u003c/b\u003e, and vWB \u003cb\u003e(j)\u003c/b\u003e to the reference measurements, i.e. mock 2 h, 24 h, and 48 h. ICAM-1 \u0026ndash; green; glycocalyx (HS) \u0026ndash; yellow, vWB \u0026ndash; red. Statistics: p values were determined by one-way ANOVA followed by Tukey\u0026rsquo;s post-hoc test, prepared in Origin software. The statistical significance was marked as: (*): p\u0026thinsp;\u0026lt;\u0026thinsp;0.05, (**): p\u0026thinsp;\u0026lt;\u0026thinsp;5E-3, (***): p\u0026thinsp;\u0026lt;\u0026thinsp;5E-6.\u003c/p\u003e \u003cp\u003e \u003cb\u003e2.4 Impact of SARS-CoV-2 variants: B..1.1.7 (Alpha), B.1.351 (Beta) and B.1.617.2 (Delta) on the nanomechanical properties of HPAECs\u003c/b\u003e \u003c/p\u003e \u003cp\u003eTo complete the knowledge about the elasticity changes of endothelial cells caused by the SARS-CoV-2 virus, we performed measurements for three variants: Alpha, Beta, Delta. The previous paragraphs showed a complete analysis of, stiffness, cytoskeleton changes, and dysfunction markers for HPAECs after infection with the B.1.13 variant of SARS-CoV-2 virus.\u003c/p\u003e \u003cp\u003eIn this section, we present changes in the elastic modulus and analysis of virus replication in HPAECs infected by subsequent variants. Obtained nanomechanical results for infected cells were compared both to the data obtained for the mock-inoculated cells as well as for non-infected control cells (Ctrl). This is because the values of elastic modulus of mock-inoculated cells change in subsequent time points, especially after 48 h p.i. The results are presented in Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003e.\u003c/p\u003e \u003cp\u003eAt first, we tested the HPAECs infected with SARS-CoV-2 Alpha variant (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ea-d). The obtained results showed a similar nature of elasticity changes as in the case of the B.1.13 variant (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ea-b). The relative changes of elastic modulus (E) (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003eb) calculated in relation to mock-inoculated cells and non-infected cells depict a similar course of changes, showing significant stiffening of HPAECs infected with Alpha variant. However, RT-qPCR studies showed no virus replication in infected HPAECs (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ec-d).\u003c/p\u003e \u003cp\u003eFor variant Beta, after infection, HPAECs were significant stiffer relative to mock and Ctrl (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ee, f). However, for 24 h p.i time, the elasticity changes are less significant than for 2 h p.i. The most significant increase of stiffness in HPAECs infected with SARS-CoV-2 Beta variant is noted after 48h p.i.. Similarly, to the Alpha variant, no virus replication was observed in HPAECs (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003eg, h).\u003c/p\u003e \u003cp\u003eThe last tested variant of the SARS-CoV-2 virus was the Delta variant. Results of the stiffness changes in HPAECs infected with the Delta variant showed a completely different cell response compared to the previous variants. The reason for this difference seems to be the large variability of the \u003cem\u003eE\u003c/em\u003e values obtained for mock-inoculated cells (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ei). Therefore, a significant increase in stiffness compared to mock was obtained solely for HPAECs after 2 h p.i. For 24 h p.i. the change in HPAECs stiffness is insignificant in relation to mock, while, after 48h p.i., a significant decrease in stiffness was observed in relation to mock (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ej). However, in the case of HPAECs infected with SARS-CoV-2 Deta variant, the relative changes of \u003cem\u003eE\u003c/em\u003e calculated in relation to the non-infected cells show significant stiffening of HPAECs at 48 h after infection. In mock-inoculated group, HPAECs were treated with the same conditions and medium as the infected group, except they were not exposed to the virus. The mock medium, collected from mock-inoculated Vero cells, could contain factors sensitizing HPAECs.\u003c/p\u003e \u003cp\u003eAnalyzing the RT-qPCR result for HPAECs cells infected with the Delta variant of the SARS-CoV-2 virus (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ek-l), an increase of virus yield in the lysate was observed (10^9 copies/ml) compared to the Alpha (10^7 copies/ml, Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ec) and Beta (\u0026lt;\u0026thinsp;10^7 copies/ml, Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003eg). Proportionally, for subsequent p.i. times, the virus yield in supernatant is also significantly higher than for the Alpha (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003ed) and Beta (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003eh) variants. Since the amount of virus in the supernatant is low, it cannot be concluded that virus replication occurs in HPAECs. We assume that an increase in the amount of virus in the cell lysate means increased efficiency of virus entry into the cell.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e"},{"header":"3. Discussion","content":"\u003cp\u003eIn this work, we have shown the impact of SARS-CoV-2 on the stiffness of epithelial and endothelial cells. In particular, we have shown the correlation between the modification of cellular stiffness and the effectiveness of viral infection.\u003c/p\u003e \u003cp\u003eEffective infection in A549\u003csup\u003e+/+\u003c/sup\u003e cells is followed by a significant two-phase change in cellular elasticity: 2 hours after infection, cells stiffen, while for longer times (24 h and 48 h p.i.) a significant reduction in cell stiffness was observed.\u003c/p\u003e \u003cp\u003eMoreover, the reduction of cell stiffness correlates with increased viral yield in lysate and supernatant. In the case of endothelial cells, we did not observe efficient virus replication, which confirms the reports in the literature of abortive infection of the endothelium by the SARS-CoV-2 virus.\u003csup\u003e[\u003cspan citationid=\"CR20\" class=\"CitationRef\"\u003e20\u003c/span\u003e]\u003c/sup\u003e However, in our work, we focused on the nanomechanical aspect, proving that the endothelium infected with the SARS-CoV-2 virus becomes significantly stiffer.\u003c/p\u003e \u003cp\u003eWe postulate that an increase in cellular stiffness is the early symptom of viral infection. Literature data indicate that a change in endothelial stiffness is a specific biomarker of endothelial condition.\u003csup\u003e[\u003cspan citationid=\"CR35\" class=\"CitationRef\"\u003e35\u003c/span\u003e]\u003c/sup\u003e Endothelial cells are one of the main players in maintaining vascular homeostasis with the ability to act in both sensory and effector capacities.\u003csup\u003e[\u003cspan citationid=\"CR36\" class=\"CitationRef\"\u003e36\u003c/span\u003e]\u003c/sup\u003e The endothelial elasticity is an important part of the mechanosensitivity mechanism of endothelium which regulates the blood pressure. This is due to the correlation between the stiffness of cells and the NO production by eNOS, as proposed by Fels et al.\u003csup\u003e[\u003cspan citationid=\"CR37\" class=\"CitationRef\"\u003e37\u003c/span\u003e]\u003c/sup\u003e Stiff cells with polymerized actin fibers, resulting in weakened mechanosensitivity, are unable to produce NO, while soft cells overproduce it. Therefore, alterations of endothelial cell stiffness play a notable role in the pathogenesis of a broad spectrum of human diseases including hypertension, stroke, heart disease, diabetes, tumor growth, and metastasis. In our work, we have shown that changes in endothelial stiffness also occur in viral infection and are induced by direct contact of the virus with the endothelium. The increase in endothelial stiffness caused by SARS-CoV-2 virus infection disrupts the endothelial mechanism of blood flow regulation and at the same time amplifies the development of inflammation. This result is particularly important for understanding susceptibility to severe COVID-19 in patients with known viremia. Clinical studies indicate that patients diagnosed with plasma viremia have been more predisposed to vascular and tissue damage related to the severe course of COVID-19.\u003csup\u003e[\u003cspan citationid=\"CR19\" class=\"CitationRef\"\u003e19\u003c/span\u003e]\u003c/sup\u003e\u003c/p\u003e \u003cp\u003eAn increase in endothelial stiffness is a symptom of a viral infection. However, the question remains about the reason for the lack of virus replication in endothelial cells. In our work, in addition to nanomechanical measurements, we focused on the analysis of some cellular cytoskeleton proteins. In general, cellular cytoskeletal proteins play an important role in viral infection of a cell. Some viruses recruit cytoskeletal proteins from the host cell for intracellular trafficking to move around in the cytoplasm much more quickly than could be accomplished by diffusion alone.\u003csup\u003e[\u003cspan additionalcitationids=\"CR39 CR40\" citationid=\"CR38\" class=\"CitationRef\"\u003e38\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR41\" class=\"CitationRef\"\u003e41\u003c/span\u003e]\u003c/sup\u003e In this work, we focus on the two cytoskeleton proteins - actin and vimentin and also one of the proteins that regulate the structure of the cytoskeleton - RhoA, which have an impact on the nanomechanical properties of cells and contributes to the life cycles of virus.\u003c/p\u003e \u003cp\u003eFirst, actin forms filaments that provide cells with mechanical support and contribute to biological processes such as mechanosensitivity, internalizing membrane vesicles, and cellular movement and communication.\u003csup\u003e[\u003cspan citationid=\"CR42\" class=\"CitationRef\"\u003e42\u003c/span\u003e]\u003c/sup\u003e In endothelial cells, in addition to the above functions, actin is responsible for maintaining the impermeability of the endothelial barrier.\u003csup\u003e[\u003cspan citationid=\"CR43\" class=\"CitationRef\"\u003e43\u003c/span\u003e]\u003c/sup\u003e Reorganization of the actin cytoskeleton is strongly related to changes in the nanomechanical properties of cells and occurs under the influence of various pathological factors.\u003csup\u003e[\u003cspan citationid=\"CR44\" class=\"CitationRef\"\u003e44\u003c/span\u003e]\u003c/sup\u003e The SARS-CoV-2 virus also uses actin in its replication cycle, hijacking the actin fibers network for moving to replication sites. In this work, we have shown that infection caused by the SARS-CoV-2 virus significantly changes the actin cytoskeleton.\u003c/p\u003e \u003cp\u003eIn the case of A549\u003csup\u003e+/+\u003c/sup\u003e cells, these changes lead to a decrease in the number of actin filaments for longer p.i. times. This result is consistent with previously published data\u003csup\u003e[\u003cspan citationid=\"CR45\" class=\"CitationRef\"\u003e45\u003c/span\u003e]\u003c/sup\u003e indicating that efficient replication in A549\u003csup\u003e+/+\u003c/sup\u003e cells reduces the number of F-actin filaments. Simultaneously, after 2 h p.it the significant increase in the F-actin content in A549\u003csup\u003e+/+\u003c/sup\u003e cells shown in our work indicates the contribution of actin filaments in the movement of the virus in the cytoplasm.\u003c/p\u003e \u003cp\u003eFor endothelial cells, the results obtained indicate a significant increase in F-actin polymerization stimulated by SARS-CoV-2 virus infection. Although for 2 h p.i. in HPAECs the actin content increases, similarly to A549\u003csup\u003e+/+\u003c/sup\u003e, for longer times p.i. the actin content also remains at a high level. This result correlates with the measurement of elasticity and, at the same time, indicates the progression of endothelial cell dysfunction and an increase in the permeability of the endothelial barrier. We speculate that actin polymerization occurring in HPAECs is one of the reasons for the inhibition of virus replication. Additionally, in HPAECs infected with SARS-CoV-2 viruses, the RhoA protein content increases, confirming that a cellular response mechanism related to actin polymerization is activated in endothelial cells. RhoA proteins are responsible for actin polymerization, which in consequence leads to increased cellular stiffening. Importantly, in endothelial cells, an increase in the level of RhoA protein unbalances the production of vasodilating and vasoconstricting substances leading to the development of endothelial dysfunction.\u003c/p\u003e \u003cp\u003eThe other cytoskeleton protein strongly related to virus biology is vimentin, which is an intermediate filament cytoskeletal component that plays important roles in the regulation of cellular functions such as migration, response to inflammation, and immunity. Vimentin forms a dynamic, and elastic network surrounding the nucleus and it spreads radially to the cell membrane. Importantly, vimentin plays essential roles in coordinating intracellular signaling pathways, particularly, in endothelial cells vimentin modulates the production of NO as well as regulating the endothelial barrier function.\u003csup\u003e[\u003cspan citationid=\"CR46\" class=\"CitationRef\"\u003e46\u003c/span\u003e]\u003c/sup\u003e In the context of virus infection, vimentin plays an important role in virus entry and replication. Arrindell et al.\u003csup\u003e[\u003cspan citationid=\"CR47\" class=\"CitationRef\"\u003e47\u003c/span\u003e]\u003c/sup\u003e demonstrated a direct interaction between the SARS-CoV-2 spike protein, ACE2, and vimentin in epithelial cells. In this cell, cell surface vimentin works as a coreceptor for SARS-CoV-2 viruses and therefore increases viral entry and cytopathogenic effects. Our results confirm this effect showing a significant increase in the vimentin content in A549\u003csup\u003e+/+\u003c/sup\u003e cells correlated with effective replication. Interestingly, for HPAECs the vimentin content decreases, which may be a clue to explain the nonproductive SARS-CoV2 infection of endothelial cells. As shown, there is a relation between vimentin and RhoA activity.\u003csup\u003e[\u003cspan citationid=\"CR48\" class=\"CitationRef\"\u003e48\u003c/span\u003e]\u003c/sup\u003e Vimentin depletion promotes RhoA activity and actin stress fiber assembly. In our work, we showed that there is an anti-correlation between RhoA and vimentin in HPAECs. The increase in RhoA activity, resulting in polymerization and increased stiffness, correlates with a decrease in vimentin content in HPAECs. In this context, it can be concluded that the interaction of these two cytoskeletal proteins may influence the effectiveness of endothelial cells viral infection.\u003c/p\u003e \u003cp\u003eACE2 is the main receptor for the SARS coronaviruses family, which regulates the entry of those viruses into cells. In the case of A549\u003csup\u003e+/+\u003c/sup\u003e cells, the overexpression of ACE2 and TMPRSS indisputably increases the effectiveness of the infection and confirms the significant contribution of these receptors to epithelial infection by SARS-CoV-2. However, for endothelial cells, abortive infection may suggest the participation of other receptors, less specific. In the cardiac system, as shown by Clarke et al.\u003csup\u003e[\u003cspan citationid=\"CR49\" class=\"CitationRef\"\u003e49\u003c/span\u003e]\u003c/sup\u003e the ACE2 binds to integrin subunits that affect integrin-induced cell signaling. Cooperation between ACE2 and the integrin receptors could explain endothelial resistance to effective SARS-CoV-2 infection. Integrins play an important role in regulating cellular proliferation, migration, inflammation, and apoptosis.\u003csup\u003e[\u003cspan citationid=\"CR50\" class=\"CitationRef\"\u003e50\u003c/span\u003e]\u003c/sup\u003e The mechanism of integrin action is related to the expression of RhoA proteins, which are the main transducer of signals from plasma membrane receptors.\u003csup\u003e[\u003cspan citationid=\"CR38\" class=\"CitationRef\"\u003e38\u003c/span\u003e, \u003cspan citationid=\"CR45\" class=\"CitationRef\"\u003e45\u003c/span\u003e, \u003cspan citationid=\"CR51\" class=\"CitationRef\"\u003e51\u003c/span\u003e]\u003c/sup\u003e RhoA proteins mediate various cellular processes, including actin polymerization, stress fiber formation, cell contraction, and cell adhesion to the associated extracellular matrix. Furthermore, RhoA protein expression is correlated with an increase in Bcl-2 protein activity in HPAECs infected with SARS-CoV-2 (Fig.\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003ee, Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003ea-b). The published data indicate that the activation of the RhoA protein in endothelial cells blocks the mitochondrial apoptosis pathway due to Bcl-2 protein activation.\u003csup\u003e[\u003cspan citationid=\"CR52\" class=\"CitationRef\"\u003e52\u003c/span\u003e]\u003c/sup\u003e Bcl-2 also acts as an antioxidant in endothelial cells. The increase in Bcl-2 in infected HPAECs protects the endothelial cells against apoptosis and DNA damage.\u003csup\u003e[\u003cspan additionalcitationids=\"CR54 CR55\" citationid=\"CR53\" class=\"CitationRef\"\u003e53\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR56\" class=\"CitationRef\"\u003e56\u003c/span\u003e]\u003c/sup\u003e Based on reports from the literature and our data, we assume that SARS-CoV-2 viruses bind to HPAECs by ACE2 or integrins, triggering the RhoA-dependent signaling pathway, which leads to actin polymerization and an increase in cell stiffness and permeability of the endothelial layer.\u003csup\u003e[\u003cspan citationid=\"CR57\" class=\"CitationRef\"\u003e57\u003c/span\u003e]\u003c/sup\u003e Moreover, as we have shown, the direct exposition of HPAECs on SARS-CoV-2 leads to the increase in the inflammation markers like ICAMs level, glycocalyx reduction, and increase of vWB factors (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003e). The glycocalyx layer plays an important role in the maintenance of selective permeability of the endothelial barrier, modulates leukocyte adhesion, and influences the antithrombotic potential of the endothelial layer. Furthermore, loss of endothelial glycocalyx influences cytoskeleton changes and vice versa.\u003csup\u003e[\u003cspan citationid=\"CR28\" class=\"CitationRef\"\u003e28\u003c/span\u003e, \u003cspan citationid=\"CR58\" class=\"CitationRef\"\u003e58\u003c/span\u003e]\u003c/sup\u003e The reduction of the glycocalyx layer increases the adhesion of circulating cells and molecules to endothelial cells, therefore, increasing the probability of thrombus formation.\u003csup\u003e[\u003cspan citationid=\"CR59\" class=\"CitationRef\"\u003e59\u003c/span\u003e]\u003c/sup\u003e The obtained results were presented graphically as a proposed model for the course of SARS-CoV-2 infection in endothelial cells (Fig.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e).\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cp\u003eFinally, we observed differences in the endothelial response to infection with SARS-CoV-2 variants (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003e). We showed that all tested SARS-CoV-2 variants (WT, Alpha, Beta and Delta) caused abortive infection in HPAECs. However, the differences in endothelial stiffness depending on the time post infection were noticed. An increase in this parameter was observed for all variants after 2 h p.i., and this trend continued in subsequent periods for the Alpha and Beta variants. In contrast, a decrease in endothelial stiffness over time was observed for the Delta variant. These results may suggest that the response of HPAEC cells to SARS-CoV-2 virus infection may depend on the virus variant, which in turn may translate into the pathophysiology of COVID-19 development and thus the consequences of infection.\u003c/p\u003e"},{"header":"4. Methods","content":"\u003cp\u003e \u003cb\u003eCells and Viruses\u003c/b\u003e: A549 (\u003cem\u003eHomo sapiens\u003c/em\u003e; lung epithelial cells; ATCC CCL-185) expressing ACE2 and TMPRSS2 (A549\u003csup\u003e+/+\u003c/sup\u003e) was performed according to the standard method used lentivirus approach.\u003csup\u003e[\u003cspan citationid=\"CR60\" class=\"CitationRef\"\u003e60\u003c/span\u003e]\u003c/sup\u003e Cells were maintained in Dulbecco-modified Eagle's medium (DMEM, high glucose, ThermoFisher Scientific, Warszawa, Poland) supplemented with 5% heat-inactivated fetal bovine serum (FBS, ThermoFisher Scientific, Poland). The medium was also complemented with penicillin (100 U ml\u003csup\u003e-1\u003c/sup\u003e, ThermoFisher Scientific, Warszawa, Poland) and streptomycin (100 \u0026micro;g ml\u003csup\u003e-1\u003c/sup\u003e, ThermoFisher Scientific, Warszawa, Poland). Furthermore, blasticidin S (10 \u0026micro;g ml\u003csup\u003e-1\u003c/sup\u003e, Sigma-Aldrich, St. Louis, MO, USA) and puromycin (0.5 \u0026micro;g ml\u003csup\u003e-1\u003c/sup\u003e, Sigma-Aldrich, St. Louis, MO, USA) were added to the medium to maintain the expression of ACE2 and TMPRSS2. Vero cells (\u003cem\u003eCercopithecus aethiops\u003c/em\u003e; kidney epithelial; ATCC CCL-81) cells were maintained in DMEM supplemented with 3% FBS, 100 U/ml penicillin, and 100 \u0026micro;g ml\u003csup\u003e-1\u003c/sup\u003e streptomycin. Cells were cultured at 37\u0026deg;C in a humid atmosphere containing 5% CO\u003csub\u003e2\u003c/sub\u003e. Every two weeks, cells were routinely tested for mycoplasma contamination. Primary Human Pulmonary Artery Endothelial Cells (HPAEC, ATCC PCS-100-022) were grown in Vascular Cell Basal Medium (Cat. No. PCS-100-030, ATCC), supplemented with Endothelial Cell Growth Kit-VEGF (Cat. No. PCS-100-041, ATCC). The medium was also completed with penicillin and streptomycin (10 mg/ml, Sigma-Aldrich, St. Louis, MO, USA).\u003c/p\u003e \u003cp\u003eThe SARS-CoV-2 strain isolated in house was used as a reference. The variant (B.1.13) is designated hCoV-19/Poland/PL_P7/2020 (GISAID accession code: EPI_ISL_428930). The Delta variant (B.1.617.2) was isolated from a sample obtained in May 2021 in the Czech Republic and is designated hCoV-19/Czech Republic/NRL_7102/2021 (GISAID accession code: EPI_ISL_2357738). The Alpha variant (B.1.1.7) was purchased from EVAg (Ref-SKU: 012V-04194), SARS-CoV-2, hCoV-19/Sweden/20-53840/2020. The Beta variant (B.1.351) was purchased from EVAg (Ref-SKU: 012V-04195), SARS-CoV-2/hCoV-19/Sweden/21-51217/2021..\u003c/p\u003e \u003cp\u003eAll SARS-CoV-2 stocks were generated by infecting of Vero cell monolayer. The cells were incubated at 37\u0026deg;C under 5% CO\u003csub\u003e2\u003c/sub\u003e. The virus-containing medium was collected on day 2 post-infection (p.i.), aliquoted, and stored at \u0026minus;\u0026thinsp;80\u0026deg;C. Control samples from mock-inoculated cells were prepared in the same manner. Virus yields were assessed by titration on fully confluent cell layers in 96-well plates, according to the method of Reed and Muench. Plates were incubated at 37\u0026deg;C, and the cytopathic effect (CPE) was scored by observation through an inverted microscope.\u003c/p\u003e \u003cp\u003e \u003cstrong\u003eViral Infection\u003c/strong\u003e \u003cp\u003eA549\u003csup\u003e+/+\u003c/sup\u003e and HPAEC cultures were seeded in a culture medium on 96-well plates (TPP, Trasadingen, Switzerland) 2 days before infection. Subconfluent cell layers were infected with SARS-CoV-2 viruses at 1600 50% tissue culture infectious dose (TCID\u003csub\u003e50\u003c/sub\u003e)/ml. After 2 h of incubation at 37\u0026deg;C, cells were rinsed twice with PBS, and a fresh medium was added. The infection was carried out for the next 48 h; supernatants and cells were collected after 2 h, 24 h, and 48 h p.i.\u003c/p\u003e \u003c/p\u003e \u003cp\u003e \u003cb\u003eIsolation of Nucleic Acids, Reverse Transcription, and Quantitative PCR\u003c/b\u003e: A viral DNA/RNA kit (A\u0026amp;A Biotechnology, Gdansk, Poland) was used for nucleic acid isolation from the cell culture supernatants and cells. RNA was isolated following the manufacturer's instructions. Viral RNA was quantified by the usage of quantitative PCR coupled with reverse transcription (RT-qPCR) (GoTaq Probe 1-Step RT-qPCR System, Promega, Poland), with CFX96 Touch real-time PCR detection system (Bio-Rad, Munich, Germany). The reaction was carried out in the presence of the primers and probe (Fwd: CAC ATT GGC ACC CGC AAT C; Rev: GAG GAA CGA GAA GAG GCT TG; probe: 6FAM-ACT TCC TCA AGG AAC AAC ATT GCC A-BHQ-1). The heating scheme was as follows: 15 min at 45\u0026deg;C and 2 min at 95\u0026deg;C, followed by 40 cycles of 15 s at 95\u0026deg;C and 1 min at 56\u0026deg;C. To assess the copy number of the N gene, standards were prepared. The PCR product was amplified and cloned into pTZ57R/T plasmids using an InsTAclone PCR cloning kit (Thermo Scientific). The resulting plasmid was linearized, and its concentration was assessed with a NanoDrop\u0026trade; 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA); the number of copies was deducted based on the Avogadro constant. The obtained standards were serially diluted and used as input for RT-qPCR.\u003c/p\u003e \u003cp\u003e \u003cb\u003eDetection of SARS-CoV-2 N sg mRNA\u003c/b\u003e: Total nucleic acids were isolated from the virus- or mock-inoculated cells with Viral DNA/RNA Kit (A\u0026amp;A Biotechnology), following the protocol provided by the manufacturer. The TURBO DNase (Thermo Fisher Scientific, Poland) was added to the samples to remove the DNA contamination; the reaction was carried out for 15 min at 37\u0026deg;C, and subsequently, the enzyme was inactivated by 10 min incubation at 75\u0026deg;C in the presence of 10 mM EDTA (Thermo Fisher Scientific, Poland). Reverse transcription was performed using a high-capacity cDNA reverse transcription kit (Thermo Fisher Scientific, Poland), following the manufacturer's instructions. Viral cDNA was amplified in a 20 \u0026micro;l reaction mixture containing 1 \u0026times; Dream Taq Green PCR master mix (Thermo Fisher Scientific), and primers (500 nM each). The following primers were used to amplify SARS-CoV-2 subgenomic mRNA (sg mRNA): forward primer TAT ACC TTC CCA GGT AAC AAA CCA; reverse primer - first PCR reaction GTA GCT CTT CGG TAG TAG CCA AT; reverse primer \u0026ndash; second PCR reaction TCT TCC TTG CCA TGT TGA GTG A. The conditions were as follows: 3 min at 95\u0026deg;C, 35 cycles (30 cycles for 2nd PCR) of 30 s at 95\u0026deg;C, 30 s at 55\u0026deg;C, and 20 s at 72\u0026deg;C, followed by 5 min at 72\u0026deg;C and 10 min at 4\u0026deg;C. The PCR products were run on 1% agarose gels (1x Tris-acetate EDTA [TAE] buffer) and analyzed in the dedicated imaging software (Thermo Fisher Scientific).\u003c/p\u003e \u003cp\u003e \u003cstrong\u003eCell preparation for AFM and confocal imaging\u003c/strong\u003e \u003cp\u003eHPAECs and A549\u003csup\u003e+/+\u003c/sup\u003e cells were seeded on a glass coverslip 48 h before the infection. Subconfluent cells were infected with all above-mentioned SARS-CoV-2 variants and after 2 h washed with PBS; the medium was refreshed. The infection was carried out for 2 h, 24 h, and 48 h, whereupon cells were fixed for 1 h with 3.7% paraformaldehyde (PFA) buffered with PHEM.\u003c/p\u003e \u003c/p\u003e \u003cp\u003e \u003cstrong\u003eAtomic Force Microscopy measurements\u003c/strong\u003e \u003cp\u003eAll measurements were carried out using fixed cells in Hanks' Balanced Salt Solution (H8264, Sigma-Aldrich) as a measuring medium. All samples were mounted into a liquid cell (BioCell, JPK Instruments) under a stable temperature set at 37\u0026deg;C. The measurement was carried out using NanoWizard 3 NanoScience AFM (JPK Instruments). HPAEC and A549\u003csup\u003e+/+\u003c/sup\u003e cell AFM imaging was performed using pyramidal-shaped Pt-Ir coated cantilevers (SCM-PIC-V2, Bruker) with a nominal spring constant of 0.1 N/m. Images (256 \u0026times; 256 pixels) were obtained at scan sizes of 4 \u0026micro;m \u0026times; 4 \u0026micro;m, 20 \u0026micro;m \u0026times; 20 \u0026micro;m (for B.1.13 variant) and 30 \u0026micro;m x 30 \u0026micro;m (for B.1.1.7, B.1.351 and B.1.617.2 variants). Topographical images were acquired with chosen force-distance (FD)-based imaging mode (QI; JPK Instruments), allowing for high-resolution imaging of fixed cells. In this method, a single FD-curve is measured in every pixel point of the image and translated from the selected trigger force into the images of cell topography. The loading force varied from 0.7 to 1.2 nN and was adjusted to obtain a clear contrast of the cell surface. The obtained images of topography were analyzed in JPK Data Processing Software.\u003c/p\u003e \u003c/p\u003e \u003cp\u003e \u003cstrong\u003eFluorescence staining and imaging\u003c/strong\u003e \u003cp\u003eFixed cells were permeabilized using 0.5% Tween-20 (13 min, room temperature [RT]), and unspecific binding sites were blocked with 5% bovine serum albumin (BSA) in PBS (4\u0026deg;C, overnight) prior to staining. Cells on coverslips were stained to visualize cellular and viral proteins. All antibodies used for immunostaining are listed in Table\u0026nbsp;\u003cspan refid=\"Tab1\" class=\"InternalRef\"\u003e1\u003c/span\u003e.\u003c/p\u003e \u003c/p\u003e \u003cp\u003e \u003cdiv class=\"gridtable\"\u003e\u003ctable float=\"Yes\" id=\"Tab1\" border=\"1\"\u003e \u003ccaption language=\"En\"\u003e \u003cdiv class=\"CaptionNumber\"\u003eTable 1\u003c/div\u003e \u003cdiv class=\"CaptionContent\"\u003e \u003cp\u003eReagents and dyes used in the measurements.\u003c/p\u003e \u003c/div\u003e \u003c/caption\u003e \u003ccolgroup cols=\"5\"\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c1\" colnum=\"1\"\u003e\u003c/div\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c2\" colnum=\"2\"\u003e\u003c/div\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c3\" colnum=\"3\"\u003e\u003c/div\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c4\" colnum=\"4\"\u003e\u003c/div\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c5\" colnum=\"5\"\u003e\u003c/div\u003e \u003cthead\u003e \u003ctr\u003e \u003cth align=\"left\" colname=\"c1\"\u003e \u003cp\u003eAntiobdy\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c2\"\u003e \u003cp\u003eProvider\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c3\"\u003e \u003cp\u003eCatalog number\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c4\"\u003e \u003cp\u003eDilution\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c5\"\u003e \u003cp\u003eConditions\u003c/p\u003e \u003c/th\u003e \u003c/tr\u003e \u003c/thead\u003e \u003ctbody\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eMouse SARS-CoV-2 N protein antibody\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eMA5-29981\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:200\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e2 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eMouse Anti-ICAM-1/CD54 antibody\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eSanta Cruz Biotechnology\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eSc-8439\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1.5 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eMitoSOX\u0026trade; Red Mitochondrial Superoxide indicator\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eMolecular Probes\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eM36008\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:1000\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e30 min, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eAnti-Rho A antibody conjugated with Alexa Fluor 647 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eSanta Cruz Biotechnology\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eSc-48 AF647\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e3 h, 4\u0026deg;C\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eBcl-2 monoclonal antibody conjugated with FITC dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA18153\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e45 min, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eRecombinant anti-vimentin antibody\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eAbcam\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eAb92573\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:200\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003eO/N, 4\u0026deg;C\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eAnti-heparin sulfate primary antibody\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eAmsbio\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003e370255_S\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:100\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003eO/N, 4\u0026deg;C\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003ePhalloidin conjugated with Alexa Fluor 647 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA22287\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:400\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e25 min, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003ePhalloidin conjugated with Alexa Fluor 488 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA12379\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:400\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e25 min, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eSecondary antibody conjugated with Alexa Fluor 488 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA-11001\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:400\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eSecondary antibody conjugated with Alexa Fluor 555 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA21422\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:200\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eSecondary antibody conjugated with Alexa Fluor 546 dye\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThermo Fisher Scientific\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eA11003\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003evWB antibody\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eSanta Cruz Biotechnology\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eSc-53466\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1 h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003em-IgGκ BP-CFL 594\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003eSanta Cruz Biotechnology\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c3\"\u003e \u003cp\u003eSc-516178\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c4\"\u003e \u003cp\u003e1:500\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c5\"\u003e \u003cp\u003e1h, RT\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003c/tbody\u003e \u003c/colgroup\u003e \u003c/table\u003e\u003c/div\u003e \u003c/p\u003e \u003cp\u003eAfter incubating with each antibody, cells were washed thrice with 0.5% Tween-20 in PBS. Finally, the nuclear DNA was stained with 4', 6-diamidino-2-phenylindole (DAPI, 0.1 mg/ml, Sigma-Aldrich), washed, and mounted on glass slides with Prolong Diamond antifade mountant (P36970, Thermo Fisher Scientific, Poland). Samples were visualized using Zeiss LSM 710 confocal microscope and 40\u0026times;/1.3 oil objective.\u003c/p\u003e \u003cp\u003e \u003cstrong\u003eStatistical analysis\u003c/strong\u003e \u003cp\u003eThe AFM nanoindentation data were presented in the form of a box-plot. Each point in box-plot graphs represents the mean elasticity modulus (E) calculated for a single cell based on a log-normal distribution fit. Next, the mean values were calculated for each data points and groups (infected cells, mock and Ctrl) in order to compute the relative changes, relative to mock and Ctrl, based on the Eq.\u0026nbsp;(\u003cspan refid=\"Equ1\" class=\"InternalRef\"\u003e1\u003c/span\u003e)\u003c/p\u003e \u003c/p\u003e \u003cp\u003e \u003cdiv id=\"Equ1\" class=\"Equation\"\u003e \u003cdiv format=\"TEX\" class=\"mathdisplay\" id=\"FileID_Equ1\" name=\"EquationSource\"\u003e\n$$Relative=\\frac{{{I}_{i}^{SARS-CoV-2}}_{ }-{I}_{i}^{R}}{{I}_{i}^{R}}\\times 100\\%$$\u003c/div\u003e \u003cdiv class=\"EquationNumber\"\u003e1\u003c/div\u003e\u003c/div\u003e \u003c/p\u003e \u003cp\u003ewhere \u003cspan class=\"InlineEquation\"\u003e\u003cspan class=\"mathinline\"\u003e\\({I}_{i}^{SARS-CoV-2}\\)\u003c/span\u003e\u003c/span\u003eare the means of elastic modulus for infected cells and \u003cspan class=\"InlineEquation\"\u003e\u003cspan class=\"mathinline\"\u003e\\({I}_{i}^{R}\\)\u003c/span\u003e\u003c/span\u003e are the means of elastic modulus mock cells or Ctrl cells after \u003cem\u003ei\u003c/em\u003e \u0026isin; {2,24,48} h of incubation. The absolute error of such measurements was calculated as a total differential of the Relative function.\u003c/p\u003e \u003cp\u003eThe fluorescence intensity data were analyzed in ImageJ software. For a single fluorescence image, the intensity was measured as a total value and normalized to the background value and a number of cells. Next, the mean fluorescence value was calculated based on all measured images, with SD as an error. To compare the data, the relative change was calculated based on the Eq.\u0026nbsp;(\u003cspan refid=\"Equ2\" class=\"InternalRef\"\u003e2\u003c/span\u003e):\u003cdiv id=\"Equ2\" class=\"Equation\"\u003e\u003cdiv format=\"TEX\" class=\"mathdisplay\" id=\"FileID_Equ2\" name=\"EquationSource\"\u003e\n$$Relative=\\frac{{{I}_{i}^{SARS-CoV-2}}_{ }-{I}_{i}^{Mock}}{{I}_{i}^{Mock}}\\times 100\\%$$\u003c/div\u003e\u003cdiv class=\"EquationNumber\"\u003e2\u003c/div\u003e\u003c/div\u003e\u003c/p\u003e \u003cp\u003ewhere \u003cspan class=\"InlineEquation\"\u003e\u003cspan class=\"mathinline\"\u003e\\({I}_{i}^{SARS-CoV-2}\\)\u003c/span\u003e\u003c/span\u003e and \u003cspan class=\"InlineEquation\"\u003e\u003cspan class=\"mathinline\"\u003e\\({I}_{i}^{Mock}\\)\u003c/span\u003e\u003c/span\u003eare the means s of fluorescence intensity for infected cells and mock cells after i \u0026isin; {2,24,48} h of incubation. The absolute error of such measurements was calculated as a total differential of the Relative function.\u003c/p\u003e \u003cp\u003eThe statistical significance was tested with a one-way ANOVA (P\u0026thinsp;\u0026lt;\u0026thinsp;0.05) followed by Tukey\u0026rsquo;s honest significant difference post-hoc test. All statistical analyses and graphs were prepared in Origin software.\u003c/p\u003e"},{"header":"Declarations","content":"\u003cp\u003eAcknowledgements\u003c/p\u003e\n\u003cp\u003eThe SARS-CoV-2 Delta variant (B.1.617.2) designated as hCoV-19/Czech Republic/NRL_7102/2021 (GISAID accession code: EPI_ISL_2357738). was kindly shared by Czech Republic National Institute of Public Health. \u003cbr\u003eThe study was partially funded by \u0026quot;Research support module\u0026quot; (No. RSM/18/KA) as part of the \u0026quot;Excellence Initiative \u0026ndash; Research University\u0026quot; program at the Jagiellonian University in Krak\u0026oacute;w (A. Kubisiak). Further, this work was supported by a subsidy from the Polish Ministry of Science and Higher Education for research on SARS-CoV-2 (K.P.), the DURABLE project, co-funded by the European Union, under the EU4Health Programme (EU4H) (https://health.ec.europa.eu/funding/eu4health-programme-2021-2027-vision-healthiereuropean-union_en#work-programmes) (K. Pyrc)\u003c/p\u003e\n\n\u003cp\u003eAuthor Contributions\u003c/p\u003e\n\u003cp\u003eA.K.: Conceptualization, Methodology, Validation, Data analysis, AFM and Fluorescence preparation and measurements, Writing, Funding acquisition; A.D.: Conceptualization, Methodology, Validation, PCR data analysis, Preparation of infected samples, Writing; \u003cbr\u003e P.B.: PCR data analysis, Preparation of infected samples; P.T.: Fluorescence data analysis; \u003cbr\u003e D.K.: Fluorescence preparation and measurements; T. K.: Fluorescence measurements; Z.R.: Fluorescence measurements, Resources; K.P.: Writing-Review and Editing, Supervision, Methodology, Data analysis, Resources; M.T.-K.: Conceptualization, Resources, Writing, Methodology, Data analysis, Supervision. All authors participated in Discussion. \u003c/p\u003e\n\n\u003cp\u003e\u003cstrong\u003eCompeting interests\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe author(s) declare no competing interests.\u003c/p\u003e\n\n\u003cp\u003eData Availability\u003c/p\u003e\n\u003cp\u003eThe datasets used and/or analysed during the current study available from the corresponding author on reasonable request.\u003c/p\u003e\n"},{"header":"References","content":"\u003col\u003e\n\u003cli\u003eGupta, P., Gupta, V., Singh, C. M. \u0026amp; Singhal, L. Emergence of COVID-19 Variants: An Update. \u003cem\u003eCureus \u003c/em\u003e(2023) \u003c/li\u003e\n\u003cli\u003eSaberiyan, M. et al. SARS-CoV-2: phenotype, genotype, and characterization of different variants. \u003cem\u003eCell Mol Biol Lett\u003c/em\u003e 27, (2022).\u003c/li\u003e\n\u003cli\u003eAckermann, M. et al. Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19. \u003cem\u003eNew England Journal of Medicine\u003c/em\u003e 383, 120\u0026ndash;128 (2020).\u003c/li\u003e\n\u003cli\u003ePerico, L., Benigni, A. \u0026amp; Remuzzi, G. SARS-CoV-2 and the spike protein in endotheliopathy. \u003cem\u003eTrends in Microbiology\u003c/em\u003e vol. 32 53\u0026ndash;67, (2024).\u003c/li\u003e\n\u003cli\u003eNicosia, R. F., Ligresti, G., Caporarello, N., Akilesh, S. \u0026amp; Ribatti, D. COVID-19 Vasculopathy: Mounting Evidence for an Indirect Mechanism of Endothelial Injury. \u003cem\u003eAmerican Journal of Pathology\u003c/em\u003e vol. 191 1374\u0026ndash;1384, (2021).\u003c/li\u003e\n\u003cli\u003eHattori, Y., Hattori, K., Machida, T. \u0026amp; Matsuda, N. Vascular endotheliitis associated with infections: Its pathogenetic role and therapeutic implication. \u003cem\u003eBiochemical Pharmacology\u003c/em\u003e vol. 197, (2022).\u003c/li\u003e\n\u003cli\u003eBarbosa, L. C., Gon\u0026ccedil;alves, T. L., de Araujo, L. P., Rosario, L. V. de O. \u0026amp; Ferrer, V. P. Endothelial cells and SARS-CoV-2: An intimate relationship. \u003cem\u003eVascul Pharmacol\u003c/em\u003e 137, (2021).\u003c/li\u003e\n\u003cli\u003eLibby, P. \u0026amp; L\u0026uuml;scher, T. COVID-19 is, in the end, an endothelial disease. \u003cem\u003eEuropean Heart Journal\u003c/em\u003e vol. 41 3038\u0026ndash;3044, (2020).\u003c/li\u003e\n\u003cli\u003eJin, Y. et al. Endothelial activation and dysfunction in COVID-19: from basic mechanisms to potential therapeutic approaches. \u003cem\u003eSignal Transduction and Targeted Therapy\u003c/em\u003e vol. 5, (2020).\u003c/li\u003e\n\u003cli\u003eWang, P. et al. A cross-talk between epithelium and endothelium mediates human alveolar\u0026ndash;capillary injury during SARS-CoV-2 infection. \u003cem\u003eCell Death Dis\u003c/em\u003e 11, (2020).\u003c/li\u003e\n\u003cli\u003eXu, S. wen, Ilyas, I. \u0026amp; Weng, J. ping. Endothelial dysfunction in COVID-19: an overview of evidence, biomarkers, mechanisms and potential therapies. \u003cem\u003eActa Pharmacologica Sinica \u003c/em\u003evol. 44 695\u0026ndash;709, (2023).\u003c/li\u003e\n\u003cli\u003eLang, J. et al. Inhibition of SARS pseudovirus cell entry by lactoferrin binding to heparan sulfate proteoglycans. \u003cem\u003ePLoS One\u003c/em\u003e 6, (2011).\u003c/li\u003e\n\u003cli\u003eBernard, I., Limonta, D., Mahal, L. K. \u0026amp; Hobman, T. C. Endothelium infection and dysregulation by sars-cov-2: Evidence and caveats in covid-19. \u003cem\u003eViruses\u003c/em\u003e vol. 13, (2021).\u003c/li\u003e\n\u003cli\u003ePons, S., Fodil, S., Azoulay, E. \u0026amp; Zafrani, L. The vascular endothelium: The cornerstone of organ dysfunction in severe SARS-CoV-2 infection. \u003cem\u003eCritical Care\u003c/em\u003e vol. 24, (2020).\u003c/li\u003e\n\u003cli\u003eNishiga, M., Wang, D. W., Han, Y., Lewis, D. B. \u0026amp; Wu, J. C. COVID-19 and cardiovascular disease: from basic mechanisms to clinical perspectives. \u003cem\u003eNature Reviews Cardiology \u003c/em\u003evol. 17 543\u0026ndash;558, (2020).\u003c/li\u003e\n\u003cli\u003eVarga, Z. et al. Endothelial cell infection and endotheliitis in COVID-19. \u003cem\u003eThe Lancet\u003c/em\u003e vol. 395 1417\u0026ndash;1418, (2020).\u003c/li\u003e\n\u003cli\u003eSt\u0026uuml;dle, C. et al. SARS-CoV-2 infects epithelial cells of the blood-cerebrospinal fluid barrier rather than endothelial cells or pericytes of the blood-brain barrier. \u003cem\u003eFluids Barriers CNS\u003c/em\u003e 20, (2023).\u003c/li\u003e\n\u003cli\u003eValdebenito, S. et al. COVID-19 Lung Pathogenesis in SARS-CoV-2 Autopsy Cases. \u003cem\u003eFront Immunol\u003c/em\u003e 12, (2021).\u003c/li\u003e\n\u003cli\u003eJacobs, J. L. et al. Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcomes. \u003cem\u003eClinical Infectious Diseases\u003c/em\u003e 74, 1525\u0026ndash;1533 (2022).\u003c/li\u003e\n\u003cli\u003eSchimmel, L. et al. Endothelial cells are not productively infected by SARS-CoV-2. \u003cem\u003eClin Transl Immunology\u003c/em\u003e 10, (2021).\u003c/li\u003e\n\u003cli\u003eLee, M. H. et al. Neurovascular injury with complement activation and inflammation in COVID-19. \u003cem\u003eBrain\u003c/em\u003e 145, 2555\u0026ndash;2568 (2022).\u003c/li\u003e\n\u003cli\u003eBuzhdygan, T. P. et al. The SARS-CoV-2 spike protein alters barrier function in 2D static and 3D microfluidic in-vitro models of the human blood\u0026ndash;brain barrier. \u003cem\u003eNeurobiol Dis\u003c/em\u003e 146, (2020).\u003c/li\u003e\n\u003cli\u003eRhea, E. M. et al. The S1 protein of SARS-CoV-2 crosses the blood\u0026ndash;brain barrier in mice. \u003cem\u003eNat Neurosci\u003c/em\u003e 24, 368\u0026ndash;378, (2021).\u003c/li\u003e\n\u003cli\u003eMa, Z., Yang, K. Y., Huang, Y. \u0026amp; Lui, K. O. Endothelial contribution to COVID-19: an update on mechanisms and therapeutic implications. \u003cem\u003eJ Mol Cell Cardiol\u003c/em\u003e 164, 69\u0026ndash;82 (2022).\u003c/li\u003e\n\u003cli\u003eTargosz-Korecka, M. et al. Endothelial glycocalyx shields the interaction of SARS-CoV-2 spike protein with ACE2 receptors. \u003cem\u003eSci Rep\u003c/em\u003e 11, (2021).\u003c/li\u003e\n\u003cli\u003eGressett, T. E. et al. Integrins as Therapeutic Targets for SARS-CoV-2. \u003cem\u003eFront Cell Infect Microbiol \u003c/em\u003e12, (2022).\u003c/li\u003e\n\u003cli\u003eTargosz-Korecka, M. et al. AFM-based detection of glycocalyx degradation and endothelial stiffening in the db/db mouse model of diabetes. \u003cem\u003eSci Rep \u003c/em\u003e7, (2017).\u003c/li\u003e\n\u003cli\u003eBar, A. et al. Degradation of Glycocalyx and Multiple Manifestations of Endothelial Dysfunction Coincide in the Early Phase of Endothelial Dysfunction Before Atherosclerotic Plaque Development in Apolipoprotein E/Low-Density Lipoprotein Receptor-Deficient Mice\u003cem\u003e. J Am Heart Assoc\u003c/em\u003e 8, (2019).\u003c/li\u003e\n\u003cli\u003eSzymonski, M., Targosz-Korecka, M. \u0026amp; Malek-Zietek, K. E. Nano-mechanical model of endothelial dysfunction for AFM-based diagnostics at the cellular level. \u003cem\u003ePharmacological Reports\u003c/em\u003e vol. 67 728\u0026ndash;735, (2015).\u003c/li\u003e\n\u003cli\u003eKolodziejczyk, A. M., Brzezinka, G. D., Khurana, K., Targosz-Korecka, M. \u0026amp; Szymonski, M. Nanomechanical sensing of the endothelial cell response to anti-inflammatory action of 1-methylnicotinamide chloride. \u003cem\u003eInt J Nanomedicine\u003c/em\u003e 8, 2757\u0026ndash;2767, (2013).\u003c/li\u003e\n\u003cli\u003eTargosz-Korecka, M., Brzezinka, G. D., Malek, K. E., Ste\u0026cedil;pi\u0026eacute;ste\u0026cedil;pi\u0026eacute;, E. \u0026amp; Szymonski, M. Stiffness Memory of EA.Hy926 Endothelial Cells in Response to Chronic Hyperglycemia. \u003cem\u003eCardiovascular Diabetology \u003c/em\u003evol. 12, (2013).\u003c/li\u003e\n\u003cli\u003eMalek-Zietek, K. E., Targosz-Korecka, M. \u0026amp; Szymonski, M. The impact of hyperglycemia on adhesion between endothelial and cancer cells revealed by single-cell force spectroscopy. \u003cem\u003eJournal of Molecular Recognition\u003c/em\u003e 30, (2017). \u003c/li\u003e\n\u003cli\u003eSusnow, N., Zeng, L., Margineantu, D., \u0026amp; Hockenbery, D. M. Bcl-2 family \u003cbr\u003eproteins as regulators of oxidative stress. \u003cem\u003eSeminars in cancer biology\u003c/em\u003e, 19(1), 42\u0026ndash;49, \u003cbr\u003e (2009).\u003c/li\u003e\n\u003cli\u003eBecker, B. F., Chappell, D., Bruegger, D., Annecke, T. \u0026amp; Jacob, M. Therapeutic strategies targeting the endothelial glycocalyx: Acute deficits, but great potential. \u003cem\u003eCardiovascular Research\u003c/em\u003e vol. 87 300\u0026ndash;310, (2010).\u003c/li\u003e\n\u003cli\u003eLange, A., Lange, J. \u0026amp; Jaskuła, E. Cytokine Overproduction and Immune System Dysregulation in alloHSCT and COVID-19 Patients. \u003cem\u003eFrontiers in Immunology\u003c/em\u003e vol. 12, (2021).\u003c/li\u003e\n\u003cli\u003eRajendran, P. \u003cem\u003eet al.\u003c/em\u003e The vascular endothelium and human diseases. \u003cem\u003eInternational Journal of Biological Sciences\u003c/em\u003e vol. 9 1057\u0026ndash;1069, (2013).\u003c/li\u003e\n\u003cli\u003eFels, J., Callies, C., Kusche-Vihrog, K., \u0026amp; Oberleithner, H. Nitric oxide release follows endothelial nanomechanics and not vice versa. \u003cem\u003ePflugers Archiv : European journal of physiology\u003c/em\u003e, 460(5), 915\u0026ndash;923, (2010).\u003c/li\u003e\n\u003cli\u003eWen, Z., Zhang, Y., Lin, Z., Shi, K. \u0026amp; Jiu, Y. Cytoskeleton - A crucial key in host cell for coronavirus infection. \u003cem\u003eJournal of Molecular Cell Biology\u003c/em\u003e vol. 12 968\u0026ndash;979, (2020).\u003c/li\u003e\n\u003cli\u003eSpear, M. \u0026amp; Wu, Y. Viral exploitation of actin: Force-generation and scaffolding functions in viral infection. \u003cem\u003eVirologica Sinica\u003c/em\u003e vol. 29 139\u0026ndash;147, (2014).\u003c/li\u003e\n\u003cli\u003eDabrowska, A. \u003cem\u003eet al.\u003c/em\u003e Reversible rearrangement of the cellular cytoskeleton: A key to the broad-spectrum antiviral activity of novel amphiphilic polymers. \u003cem\u003eMater Today Bio\u003c/em\u003e \u003cstrong\u003e22\u003c/strong\u003e, (2023).\u003c/li\u003e\n\u003cli\u003eBearer, E. L. \u0026amp; Satpute-Krishnan, P. The Role of the Cytoskeleton in the Life Cycle of Viruses and Intracellular Bacteria: Tracks, Motors, and Polymerization Machines. \u003cem\u003eCurrent drug targets. Infectious disorders\u003c/em\u003e, 2(3), 247\u0026ndash;264. (2002).\u003c/li\u003e\n\u003cli\u003ePollard, T. D. \u0026amp; Cooper, J. A. Actin, a central player in cell shape and movement. \u003cem\u003eScience\u003c/em\u003e vol. 326 1208\u0026ndash;1212, (2009).\u003c/li\u003e\n\u003cli\u003eDugina, V. B., Shagieva, G. S., Shakhov, A. S. \u0026amp; Alieva, I. B. The cytoplasmic actins in the regulation of endothelial cell function. \u003cem\u003eInternational Journal of Molecular Sciences\u003c/em\u003e vol. 22, (2021).\u003c/li\u003e\n\u003cli\u003ePapakonstanti, E. A. \u0026amp; Stournaras, C. Cell responses regulated by early reorganization of actin cytoskeleton. \u003cem\u003eFEBS Letters\u003c/em\u003e vol. 582 2120\u0026ndash;2127, (2008).\u003c/li\u003e\n\u003cli\u003eSwain, J. et al. F-actin nanostructures rearrangements and regulation are essential for SARS-CoV-2 particle production in host pulmonary cells. \u003cem\u003eiScience\u003c/em\u003e 26, (2023).\u003c/li\u003e\n\u003cli\u003eRidge, K. M., Eriksson, J. E., Pekny, M. \u0026amp; Goldman, R. D. Roles of vimentin in health and disease.\u003cem\u003e Genes \u0026amp; development\u003c/em\u003e, 36(7-8), 391\u0026ndash;407 (2022)\u003c/li\u003e\n\u003cli\u003eArrindell, J. \u003cem\u003eet al.\u003c/em\u003e Vimentin is an important ACE2 co-receptor for SARS-CoV-2 in epithelial cells. \u003cem\u003eiScience\u003c/em\u003e \u003cstrong\u003e25\u003c/strong\u003e, (2022). \u003c/li\u003e\n\u003cli\u003eJiu, Y. et al. Vimentin Intermediate Filaments Control Actin Stress Fiber Assembly through GEF-H1 and RhoA. \u003cem\u003eJournal of cell science\u003c/em\u003e, 130(5), 892\u0026ndash;902 (2017).\u003c/li\u003e\n\u003cli\u003eClarke, N. E., Fisher, M. J., Porter, K. E., Lambert, D. W. \u0026amp; Turner, A. J. Angiotensin converting enzyme (ACE) and ACE2 bind integrins and ACE2 regulates integrin signalling. \u003cem\u003ePLoS One\u003c/em\u003e 7, (2012).\u003c/li\u003e\n\u003cli\u003eRobles, J. P., Zamora, M., Martinez De La Escalera, G. \u0026amp; Clapp, C. The spike protein of SARS-CoV-2 induces endothelial inflammation through integrin \u0026alpha;5\u0026beta;1 and NF-\u0026kappa;B. \u003cem\u003eThe Journal of biological chemistry\u003c/em\u003e, 298(3), 101695, (2022)\u003c/li\u003e\n\u003cli\u003eKloc, M., Uosef, A., Wosik, J., Kubiak, J. Z. \u0026amp; Ghobrial, R. M. Virus interactions with the actin cytoskeleton\u0026mdash;what we know and do not know about SARS-CoV-2. \u003cem\u003eArchives of Virology\u003c/em\u003e vol. 167 737\u0026ndash;749, (2022).\u003c/li\u003e\n\u003cli\u003eDel Re, D. P., Miyamoto, S. \u0026amp; Brown, J. H. Focal adhesion kinase as a RhoA- activable signaling scaffold mediating activation and cardiomyocyte protection. \u003cem\u003eJournal of Biological Chemistry\u003c/em\u003e \u003cstrong\u003e283\u003c/strong\u003e, 35622\u0026ndash;35629 (2008).\u003c/li\u003e\n\u003cli\u003eFlorentini, C. \u003cem\u003eet al.\u003c/em\u003e Toxin-induced activation of Rho GTP-binding protein increases Bcl-2 expression and influences mitochondrial homeostasis. \u003cem\u003eExp Cell Res\u003c/em\u003e \u003cstrong\u003e242\u003c/strong\u003e, 341\u0026ndash;350 (1998).\u003c/li\u003e\n\u003cli\u003eKang, J. \u0026amp; Pervaiz, S. Crosstalk between Bcl-2 family and Ras family small GTPases: potential cell fate regulation? \u003cem\u003eFrontiers in Oncology\u003c/em\u003e vol. 2 JAN (2013).\u003c/li\u003e\n\u003cli\u003eTargosz-Korecka, M. \u003cem\u003eet al.\u003c/em\u003e Stiffness changes of tumor HEp2 cells correlates with the inhibition and release of TRAIL-induced apoptosis pathways. in \u003cem\u003eJournal of Molecular Recognition\u003c/em\u003e vol. 25 299\u0026ndash;308 (2012).\u003c/li\u003e\n\u003cli\u003eWilson, A. J. \u003cem\u003eet al.\u003c/em\u003e The DNA damage mark pH2AX differentiates the cytotoxic effects of small molecule HDAC inhibitors in ovarian cancer cells. \u003cem\u003eCancer Biol Ther\u003c/em\u003e \u003cstrong\u003e12\u003c/strong\u003e, 484\u0026ndash;493 (2011).\u003c/li\u003e\n\u003cli\u003eSzczygiel, A. M., Brzezinka, G., Targosz-Korecka, M., Chlopicki, S. \u0026amp; Szymonski, M. Elasticity changes anti-correlate with NO production for human endothelial cells stimulated with TNF-\u0026alpha;. \u003cem\u003ePflugers Arch\u003c/em\u003e \u003cstrong\u003e463\u003c/strong\u003e, 487\u0026ndash;496 (2012).\u003c/li\u003e\n\u003cli\u003eGiergiel, M., Malek-Zietek, K. E., Konior, J. \u0026amp; Targosz-Korecka, M. Endothelial glycocalyx detection and characterization by means of atomic force spectroscopy: Comparison of various data analysis approaches. \u003cem\u003eMicron\u003c/em\u003e 151, (2021).\u003c/li\u003e\n\u003cli\u003eStȩpien, E. \u003cem\u003eet al.\u003c/em\u003e Circulating ectosomes: Determination of angiogenic microRNAs in type 2 diabetes. \u003cem\u003eTheranostics\u003c/em\u003e \u003cstrong\u003e8\u003c/strong\u003e, 3874\u0026ndash;3890 (2018).\u003c/li\u003e\n\u003cli\u003eSynowiec, A. et al. Identification of cellular factors required for sars-cov-2 replication. \u003cem\u003eCells \u003c/em\u003e10, (2021).\u003c/li\u003e\n\u003c/ol\u003e"}],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":true,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":false,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":false,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"
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