References
Sundsten T, Ortsater H (2009) Proteomics in diabetes research. Mol Cell Endocrinol 297:93–103
Yi L, Swensen AC, Qian WJ (2018) Serum biomarkers for diagnosis and prediction of type 1 diabetes. Transl Res 201:13–25
De Jesus DF, Kulkarni RN (2019) “Omics” and “epi-omics” underlying the beta-cell adaptation to insulin resistance. Mol Metab 27S:S42–SS8
Ahmed S, Cerosaletti K, James E et al (2019) Standardizing T-cell biomarkers in type 1 diabetes: challenges and recent advances. Diabetes 68:1366–1379
Lampasona V, Schlosser M, Mueller PW et al (2011) Diabetes antibody standardization program: first proficiency evaluation of assays for autoantibodies to zinc transporter 8. Clin Chem 57:1693–1702
Schlosser M, Mueller PW, Achenbach P et al (2011) Diabetes antibody standardization program: first evaluation of assays for autoantibodies to IA-2beta. Diabetes Care 34:2410–2412
Schlosser M, Mueller PW, Torn C et al (2010) Diabetes antibody standardization program: evaluation of assays for insulin autoantibodies. Diabetologia 53:2611–2620
Torn C, Mueller PW, Schlosser M et al (2008) Diabetes antibody standardization program: evaluation of assays for autoantibodies to glutamic acid decarboxylase and islet antigen-2. Diabetologia 51:846–852
Zheng Y, Ley SH, Hu FB (2018) Global aetiology and epidemiology of type 2 diabetes mellitus and its complications. Nat Rev Endocrinol 14:88–98
Talchai C, Xuan S, Lin HV et al (2012) Pancreatic beta cell dedifferentiation as a mechanism of diabetic beta cell failure. Cell 150:1223–1234
Chen ZZ, Gerszten RE (2020) Metabolomics and proteomics in type 2 diabetes. Circ Res 126:1613–1627
Elhadad MA, Jonasson C, Huth C et al (2020) Deciphering the plasma proteome of type 2 diabetes. Diabetes 69:2766–2778
Liu X, Feng Q, Chen Y et al (2009) Proteomics-based identification of differentially-expressed proteins including galectin-1 in the blood plasma of type 2 diabetic patients. J Proteome Res 8:1255–1262
Kim SW, Choi JW, Yun JW et al (2019) Proteomics approach to identify serum biomarkers associated with the progression of diabetes in Korean patients with abdominal obesity. PLoS One 14:e0222032
Liu C, Sun YV (2021) Anticipation of precision diabetes and promise of integrative multi-omics. Endocrinol Metab Clin N Am 50:559–574
Feldt-Rasmussen U, Effraimidis G, Klose M (2021) The hypothalamus-pituitary-thyroid (HPT)-axis and its role in physiology and pathophysiology of other hypothalamus-pituitary functions. Mol Cell Endocrinol 525:111173
Ortiga-Carvalho TM, Chiamolera MI, Pazos-Moura CC et al (2016) Hypothalamus-pituitary-thyroid axis. Compr Physiol 6:1387–1428
Chin WW, Shupnik MA, Ross DS et al (1985) Regulation of the alpha and thyrotropin beta-subunit messenger ribonucleic acids by thyroid hormones. Endocrinology 116:873–878
Goulart-Silva F, de Souza PB, Nunes MT (2011) T3 rapidly modulates TSHbeta mRNA stability and translational rate in the pituitary of hypothyroid rats. Mol Cell Endocrinol 332:277–282
Bargi-Souza P, Romano RM, Salgado Rde M et al (2013) Triiodothyronine rapidly alters the TSH content and the secretory granules distribution in male rat thyrotrophs by a cytoskeleton rearrangement-independent mechanism. Endocrinology 154:4908–4918
Bargi-Souza P, Goulart-Silva F, Nunes MT (2017) Novel aspects of T(3) actions on GH and TSH synthesis and secretion: physiological implications. J Mol Endocrinol 59:R167–RR78
Bargi-Souza P, Goulart-Silva F, Nunes MT (2018) Posttranscriptional actions of triiodothyronine on Tshb expression in TalphaT1 cells: new insights into molecular mechanisms of negative feedback. Mol Cell Endocrinol 478:45–52
Zoeller RT, Tan SW, Tyl RW (2007) General background on the hypothalamic-pituitary-thyroid (HPT) axis. Crit Rev Toxicol 37:11–53
Cheng SY, Leonard JL, Davis PJ (2010) Molecular aspects of thyroid hormone actions. Endocr Rev 31:139–170
Liu X, Guo Z, Sun H et al (2017) Comprehensive map and functional annotation of human pituitary and thyroid proteome. J Proteome Res 16:2680–2691
Merkulova T, Keller A, Oliviero P et al (2000) Thyroid hormones differentially modulate enolase isozymes during rat skeletal and cardiac muscle development. Am J Physiol Endocrinol Metab 278:E330–E339
Silvestri E, Moreno M, Schiavo L et al (2006) A proteomics approach to identify protein expression changes in rat liver following administration of 3,5,3′-triiodo-L-thyronine. J Proteome Res 5:2317–2327
Silvestri E, Burrone L, de Lange P et al (2007) Thyroid-state influence on protein-expression profile of rat skeletal muscle. J Proteome Res 6:3187–3196
Zinman T, Shneyvays V, Tribulova N et al (2006) Acute, nongenomic effect of thyroid hormones in preventing calcium overload in newborn rat cardiocytes. J Cell Physiol 207:220–231
Davis PJ, Davis FB (2002) Nongenomic actions of thyroid hormone on the heart. Thyroid 12:459–466
Takano AP, Diniz GP, Barreto-Chaves ML (2013) AMPK signaling pathway is rapidly activated by T3 and regulates the cardiomyocyte growth. Mol Cell Endocrinol 376:43–50
Klein I, Ojamaa K (2001) Thyroid hormone and the cardiovascular system. N Engl J Med 344:501–509
Biondi B (2012) Mechanisms in endocrinology: heart failure and thyroid dysfunction. Eur J Endocrinol 167:609–618
Dillmann WH (2002) Cellular action of thyroid hormone on the heart. Thyroid 12:447–452
Patel M, Mishra V, Pawar V et al (2013) Evaluation of acute physiological and molecular alterations in surgically developed hypothyroid Wistar rats. J Pharmacol Pharmacother 4:110–115
Zhu WZ, Olson A, Portman M et al (2020) Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice. Proteome Sci 18:11
Hu Z, Du M, Lai W et al (2018) Energy metabolism in the bone is associated with histomorphometric changes in rats with hyperthyroidism. Cell Physiol Biochem 46:1471–1482
Romano RM, Bargi-Souza P, Brunetto EL et al (2013) Hypothyroidism in adult male rats alters posttranscriptional mechanisms of luteinizing hormone biosynthesis. Thyroid 23:497–505
Romano RM, Bargi-Souza P, Brunetto EL et al (2018) Triiodothyronine differentially modulates the LH and FSH synthesis and secretion in male rats. Endocrine 59:191–202
Silva JF, Ocarino NM, Vieira AL et al (2013) Effects of hypo- and hyperthyroidism on proliferation, angiogenesis, apoptosis and expression of COX-2 in the corpus luteum of female rats. Reprod Domest Anim 48:691–698
Nascimento Gomes S, do Carmo Correa DE, de Oliveira IM et al (2020) Imbalanced testicular metabolism induced by thyroid disorders: new evidences from quantitative proteome. Endocrine 67:209–223
Lopes IMD, de Oliveira IM, Bargi-Souza P et al (2019) Effects of silver nanoparticle exposure to the testicular antioxidant system during the Prepubertal rat stage. Chem Res Toxicol 32:986–994
Oliveira VM, Ivanski F, Oliveira IM et al (2020) Acrylamide induces a thyroid allostasis-adaptive response in prepubertal exposed rats. Curr Res Toxicol 1:124–132
Romano RM, de Oliveira JM, de Oliveira VM et al (2021) Could glyphosate and glyphosate-based herbicides be associated with increased thyroid diseases worldwide? Front Endocrinol (Lausanne) 12:627167
de Oliveira IM, Cavallin MD, Correa D et al (2020) Proteomic profiles of thyroid gland and gene expression of the hypothalamic-pituitary-thyroid axis are modulated by exposure to AgNPs during prepubertal rat stages. Chem Res Toxicol 33:2605–2622
Alfadda AA, Benabdelkamel H, Masood A et al (2018) Differences in the plasma proteome of patients with hypothyroidism before and after thyroid hormone replacement: a proteomic analysis. Int J Mol Sci 19
Masood A, Benabdelkamel H, Ekhzaimy AA et al (2020) Plasma-based proteomics profiling of patients with hyperthyroidism after antithyroid treatment. Molecules 25
Masood A, Benabdelkamel H, Jammah AA et al (2021) Identification of protein changes in the urine of hypothyroid patients treated with thyroxine using proteomics approach. ACS Omega 6:2367–2378
Ritchie RF, Palomaki GE, Neveux LM et al (2004) Reference distributions for complement proteins C3 and C4: a practical, simple and clinically relevant approach in a large cohort. J Clin Lab Anal 18:1–8
Meng S, Zhang W, Guan LJ et al (2017) Proteomic analysis reveals aberrant expression of CALR and HSPA5 in thyroid tissues of Graves’ disease. Clin Biochem 50:40–45
Davies L, Morris LG, Haymart M et al (2015) American Association of Clinical Endocrinologists and American College of endocrinology disease state clinical review: the increasing incidence of thyroid cancer. Endocr Pract 21:686–696
Papini E, Guglielmi R, Bianchini A et al (2002) Risk of malignancy in nonpalpable thyroid nodules: predictive value of ultrasound and color-Doppler features. J Clin Endocrinol Metab 87:1941–1946
DeLellis RA, Lloyd RV, Heitz PU et al (2004) Pathology and genetics of tumours of endocrine organs. World Health Organization Classification of Tumours. IARC Press, Lyon
Sofiadis A, Dinets A, Orre LM et al (2010) Proteomic study of thyroid tumors reveals frequent up-regulation of the Ca2+ −binding protein S100A6 in papillary thyroid carcinoma. Thyroid 20:1067–1076
Sofiadis A, Becker S, Hellman U et al (2012) Proteomic profiling of follicular and papillary thyroid tumors. Eur J Endocrinol 166:657–667
McArdle CA, Roberson MS (2015) Gonadotropes and gonadotropin-releasing hormone signaling. In: Plant TM, Zeleznik AJ (eds) Knobil and Neill’s physiology of reproduction, 4th edn. Academic Press, pp 335–397
Bindea G, Galon J, Mlecnik B (2013) CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data. Bioinformatics 29:661–663
Bindea G, Mlecnik B, Hackl H et al (2009) ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 25:1091–1093
Shannon P, Markiel A, Ozier O et al (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13:2498–2504
Djureinovic D, Fagerberg L, Hallstrom B et al (2014) The human testis-specific proteome defined by transcriptomics and antibody-based profiling. Mol Hum Reprod 20:476–488
Fagerberg L, Hallstrom BM, Oksvold P et al (2014) Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Mol Cell Proteomics 13:397–406
Pineau C, Hikmet F, Zhang C et al (2019) Cell type-specific expression of testis elevated genes based on transcriptomics and antibody-based proteomics. J Proteome Res 18:4215–4230
Uhlen M, Fagerberg L, Hallstrom BM et al (2015) Proteomics. Tissue-based map of the human proteome. Science 347:1260419
O’Hurley G, Busch C, Fagerberg L et al (2015) Analysis of the human prostate-specific proteome defined by transcriptomics and antibody-based profiling identifies TMEM79 and ACOXL as two putative, diagnostic markers in prostate cancer. PLoS One 10:e0133449
Zieba A, Sjostedt E, Olovsson M et al (2015) The human endometrium-specific proteome defined by transcriptomics and antibody-based profiling. OMICS 19:659–668
Adhikari S, Nice EC, Deutsch EW et al (2020) A high-stringency blueprint of the human proteome. Nat Commun 11:5301
Lander ES, Linton LM, Birren B et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860–921
Agarwal A, Parekh N, Panner Selvam MK et al (2019) Male oxidative stress infertility (MOSI): proposed terminology and clinical practice guidelines for Management of Idiopathic Male Infertility. World J Mens Health 37:296–312
Guo Y, Li J, Hao F et al (2022) A new perspective on semen quality of aged male: the characteristics of metabolomics and proteomics. Front Endocrinol (Lausanne) 13:1058250
Becker LS, Al Smadi MA, Raeschle M et al (2023) Proteomic landscape of human sperm in patients with different Spermatogenic impairments. Cell 12
Zamah AM, Hassis ME, Albertolle ME et al (2015) Proteomic analysis of human follicular fluid from fertile women. Clin Proteomics 12:5
Corda PO, Moreira J, Howl J et al (2023) Differential proteomic analysis of human sperm: a systematic review to identify candidate targets to monitor sperm quality, vol 41. World J Mens Health
Sim YJ, Ryu AR, Lee MY (2022) Proteomic analysis of human follicular fluid from polycystic ovary syndrome patients. Biotechnol Appl Biochem 69:289–295
Ye J, Li Y, Kong C et al (2023) Label-free proteomic analysis and functional analysis in patients with intrauterine adhesion. J Proteome 277:104854
Preiano M, Correnti S, Butt TA et al (2023) Mass spectrometry-based untargeted approaches to reveal diagnostic signatures of male infertility in seminal plasma: a new laboratory perspective for the clinical management of infertility? Int J Mol Sci 24
Uhlen M, Álvez MB, Edfors F et al (2022) Next generation pan-cancer blood proteome profiling using proximity extension assay. Research Square
Ferrario CM, Groban L, Wang H et al (2022) The renin-angiotensin system biomolecular cascade: a 2022 update of newer insights and concepts. Kidney Int Suppl (2011) 12:36–47
Sharma N, Anders HJ, Gaikwad AB (2019) Fiend and friend in the renin angiotensin system: an insight on acute kidney injury. Biomed Pharmacother 110:764–774
Du N, Feng J, Hu LJ et al (2012) Angiotensin II receptor type 1 blockers suppress the cell proliferation effects of angiotensin II in breast cancer cells by inhibiting AT1R signaling. Oncol Rep 27:1893–1903
Sparks MA, Stegbauer J, Chen D et al (2015) Vascular type 1A angiotensin II receptors control BP by regulating renal blood flow and urinary sodium excretion. J Am Soc Nephrol 26:2953–2962
Carey RM, Siragy HM, Gildea JJ et al (2022) Angiotensin type-2 receptors: transducers of Natriuresis in the renal proximal tubule. Int J Mol Sci 23
Li XC, Zhang J, Zhuo JL (2017) The vasoprotective axes of the renin-angiotensin system: physiological relevance and therapeutic implications in cardiovascular, hypertensive and kidney diseases. Pharmacol Res 125:21–38
Martyniak A, Tomasik PJ (2022) A new perspective on the renin-angiotensin system. Diagnostics (Basel) 13
Jesus ICG, Mesquita T, Souza Santos RA et al (2023) An overview of alamadine/MrgD signaling and its role in cardiomyocytes. Am J Physiol Cell Physiol 324:C606–CC13
Schleifenbaum J (2019) Alamandine and its receptor MrgD pair up to join the protective arm of the renin-angiotensin system. Front Med (Lausanne) 6:107
Saavedra JM (2021) Angiotensin receptor blockers are not just for hypertension anymore. Physiology (Bethesda) 36:160–173
Braga CL, Silva-Aguiar RP, Battaglini D et al (2020) The renin-angiotensin-aldosterone system: role in pathogenesis and potential therapeutic target in COVID-19. Pharmacol Res Perspect 8:e00623
El-Arif G, Farhat A, Khazaal S et al (2021) The renin-angiotensin system: a key role in SARS-CoV-2-induced COVID-19. Molecules 26
Silva-Aguiar RP, Peruchetti DB, Rocco PRM et al (2020) Role of the renin-angiotensin system in the development of severe COVID-19 in hypertensive patients. Am J Physiol Lung Cell Mol Physiol 319:L596–L602
Silva-Aguiar RP, Teixeira DE, Peres RAS et al (2022) Subclinical acute kidney injury in COVID-19: possible mechanisms and future perspectives. Int J Mol Sci 23
Peruchetti DB, Barahuna-Filho PFR, Silva-Aguiar RP et al (2021) Megalin-mediated albumin endocytosis in renal proximal tubules is involved in the antiproteinuric effect of angiotensin II type 1 receptor blocker in a subclinical acute kidney injury animal model. Biochim Biophys Acta Gen Subj 1865:129950
Dominguez DC, Lopes R, Torres ML (2007) Proteomics: clinical applications. Clin Lab Sci 20:245–248
Petricoin EF, Liotta LA (2003) Clinical applications of proteomics. J Nutr 133:2476S–2484S
Cummins TD, Korte EA, Bhayana S et al (2022) Advances in proteomic profiling of pediatric kidney diseases. Pediatr Nephrol 37:2255–2265
Guo J, Guo X, Sun Y et al (2022) Application of omics in hypertension and resistant hypertension. Hypertens Res 45:775–788
Staessen JA, Wendt R, Yu YL et al (2022) Predictive performance and clinical application of COV50, a urinary proteomic biomarker in early COVID-19 infection: a prospective multicentre cohort study. Lancet Digit Health 4:e727–ee37
Tepasse PR, Vollenberg R, Steinebrey N et al (2022) The dysregulation of the renin-angiotensin system in COVID-19 studied by serum proteomics: angiotensinogen increases with disease severity. Molecules 27
Zimmermann T, Walter JE, Lopez-Ayala P et al (2021) Influence of renin-angiotensin-aldosterone system inhibitors on plasma levels of angiotensin-converting enzyme 2. ESC Heart Fail 8:1717–1721
Feyaerts D, Hedou J, Gillard J et al (2022) Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19. Cell Rep Med 3:100680
Matafora V, Lanzani C, Zagato L et al (2021) Urinary proteomics reveals key markers of salt sensitivity in hypertensive patients during saline infusion. J Nephrol 34:739–751
Zhou F, Luo Q, Han L et al (2021) Proteomics reveals urine apolipoprotein A-I as a potential biomarker of acute kidney injury following percutaneous coronary intervention in elderly patients. Exp Ther Med 22:745
Hashemzehi M, Rahmani F, Khoshakhlagh M et al (2021) Angiotensin receptor blocker losartan inhibits tumor growth of colorectal cancer. EXCLI J 20:506–521
Ferreira JP, Verdonschot J, Wang P et al (2021) Proteomic and mechanistic analysis of spironolactone in patients at risk for HF. JACC Heart Fail 9:268–277
Takahashi JS (2017) Transcriptional architecture of the mammalian circadian clock. Nat Rev Genet 18:164–179
Robles MS, Humphrey SJ, Mann M (2017) Phosphorylation is a central mechanism for circadian control of metabolism and physiology. Cell Metab 25:118–127
Gabriel BM, Altintas A, Smith JAB et al (2021) Disrupted circadian oscillations in type 2 diabetes are linked to altered rhythmic mitochondrial metabolism in skeletal muscle. Sci Adv 7:eabi9654
Takahashi JS, Hong HK, Ko CH et al (2008) The genetics of mammalian circadian order and disorder: implications for physiology and disease. Nat Rev Genet 9:764–775
Anothaisintawee T, Reutrakul S, Van Cauter E et al (2016) Sleep disturbances compared to traditional risk factors for diabetes development: systematic review and meta-analysis. Sleep Med Rev 30:11–24
Morales-Santana S, Morell S, Leon J et al (2019) An overview of the polymorphisms of circadian genes associated with endocrine cancer. Front Endocrinol (Lausanne) 10:104
Docimo A, Verde L, Barrea L et al (2023) Type 2 diabetes: also a “clock matter”? Nutrients 15
Isherwood CM, Van der Veen DR, Johnston JD et al (2017) Twenty-four-hour rhythmicity of circulating metabolites: effect of body mass and type 2 diabetes. FASEB J 31:5557–5567
Petrenko V, Sinturel F, Loizides-Mangold U et al (2022) Type 2 diabetes disrupts circadian orchestration of lipid metabolism and membrane fluidity in human pancreatic islets. PLoS Biol 20:e3001725
Lee J, Kim MS, Li R et al (2011) Loss of Bmal1 leads to uncoupling and impaired glucose-stimulated insulin secretion in beta-cells. Islets 3:381–388
Lee J, Moulik M, Fang Z et al (2013) Bmal1 and beta-cell clock are required for adaptation to circadian disruption, and their loss of function leads to oxidative stress-induced beta-cell failure in mice. Mol Cell Biol 33:2327–2338
de Jesus DS, Bargi-Souza P, Cruzat V et al (2022) BMAL1 modulates ROS generation and insulin secretion in pancreatic beta-cells: an effect possibly mediated via NOX2. Mol Cell Endocrinol 555:111725
Tiwari A, Rathor P, Trivedi PK et al (2023) Multi-omics reveal interplay between circadian dysfunction and type2 diabetes. Biology (Basel) 12
Mahoney MM (2010) Shift work, jet lag, and female reproduction. Int J Endocrinol 2010:813764
Ono M, Ando H, Daikoku T et al (2023) The circadian clock, nutritional signals and reproduction: a close relationship. Int J Mol Sci 24
Stow LR, Gumz ML (2011) The circadian clock in the kidney. J Am Soc Nephrol 22:598–604
Bignon Y, Wigger L, Ansermet C et al (2023) Multiomics reveals multilevel control of renal and systemic metabolism by the renal tubular circadian clock. J Clin Invest 133
Hu C, Beebe K, Hernandez EJ et al (2022) Multiomic identification of factors associated with progression to cystic kidney disease in mice with nephron Ift88 disruption. Am J Physiol Renal Physiol 322:F175–FF92
Mauvoisin D, Gachon F (2020) Proteomics in circadian biology. J Mol Biol 432:3565–3577
Acknowledgments
This work was supported by the Brazilian National Council for Scientific and Technological Development (CNPq) [PB-S: grant number 403972/ 2021–3] and Minas Gerais Research Foundation (FAPEMIG) [PB-S: grant number APQ-00013-22]. CFB is supported by a fellowship from CNPq.
Competing Interests
The authors declare that they have no known competing financial interests or personal relationships that could inappropriately influence (bias) the work reported in this chapter.
Author information
Authors and Affiliations
Corresponding authors
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2024 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Peliciari-Garcia, R.A., de Barros, C.F., Secio-Silva, A., de Barros Peruchetti, D., Romano, R.M., Bargi-Souza, P. (2024). Multi-omics Investigations in Endocrine Systems and Their Clinical Implications. In: Verano-Braga, T. (eds) Mass Spectrometry-Based Approaches for Treating Human Diseases and Diagnostics. Advances in Experimental Medicine and Biology(), vol 1443. Springer, Cham. https://doi.org/10.1007/978-3-031-50624-6_10
Download citation
DOI: https://doi.org/10.1007/978-3-031-50624-6_10
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-50623-9
Online ISBN: 978-3-031-50624-6
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)