Co-culture for improving the biosynthesis ability of Huperzine A

preprint OA: closed
Full text JSON View at publisher

Abstract

Abstract Huperzine A (HupA) is for treating Alzheimer's disease(AD) which was mainly extracted from the Huperzia serrata(HS). Especially, (-)-HupA extracted from HS with high inhibitory activity of acetylcholinesterase are scarce and the chemical synthesis of (+)- HupA is high toxicity with low acetylcholinesterase inhibitory activity. In this work, Serratia marcescens HL1 was firstly found and isolated from HS, that was identified according to their morphological characteristics and nuclear 16SDNA sequences. It could biosynthesize HupA(BHA) of 32.976 ± 0.21 mg/L which was co-cultivated after with endophytic fungi Trichoderma harzianum NSW-V. Moreover, this bacteria with shorter fermentation time could form better purity and crystal structure with the same physicochemical properties compared to (-)-HupA isolated from HS(PHA) according to the results of NMR and molecular docking. Furthermore, this study explored new indications for HupA which indicated it could protect β-cells of pancreatic islets.
Full text 84,142 characters · extracted from preprint-html · click to expand
Co-culture for improving the biosynthesis ability of Huperzine A | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Research Article Co-culture for improving the biosynthesis ability of Huperzine A Han Wen-Xia, Han Zhong-Wen, Mi Yu, Zhang Han, Li Wei-Ze, Guan Li, and 4 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-6221643/v1 This work is licensed under a CC BY 4.0 License Status: Posted Version 1 posted You are reading this latest preprint version Abstract Huperzine A (HupA) is for treating Alzheimer's disease(AD) which was mainly extracted from the Huperzia serrata(HS) . Especially, (-)-HupA extracted from HS with high inhibitory activity of acetylcholinesterase are scarce and the chemical synthesis of (+)- HupA is high toxicity with low acetylcholinesterase inhibitory activity. In this work, Serratia marcescens HL1 was firstly found and isolated from HS , that was identified according to their morphological characteristics and nuclear 16SDNA sequences. It could biosynthesize HupA(BHA) of 32.976 ± 0.21 mg/L which was co-cultivated after with endophytic fungi Trichoderma harzianum NSW-V. Moreover, this bacteria with shorter fermentation time could form better purity and crystal structure with the same physicochemical properties compared to (-)-HupA isolated from HS (PHA) according to the results of NMR and molecular docking. Furthermore, this study explored new indications for HupA which indicated it could protect β-cells of pancreatic islets. Huperzine A Alzheimer's disease Diabetic disease Huperzia serrata Endophytic bacteria Biosynthesis systems Serratia marcescens Figures Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 6 Figure 7 Figure 8 Introduction Alzheimer’s disease (AD) is one disease marked by gradual dementia and the cognitive function deterioration(Venkata Ratnam, K. et al. 2022 ; Kumar, A. & Yadav, A.K. 2023; Dadlani, V.G. et al. 2023; Yadav, M.R. et al. 2023). The drugs for treating AD include acetylcholinesterase(AChE) inhibitors (AChEIs) containing rivastigmine, donepezil, galantamine, and NMDA receptor antagonist memantine (Yadav, M.R. et al. 2023). Fortunately, Huperzine A (HupA) is one of the AChEIs with good potency and selectivity, especially with the reversible inhibition of AChE (Kunal 2018; Xiaoqiang et al. 2008; Ratia et al. 2013 ; Xiao-Tian et al. 2014; Dadlani, V.G. et al.; 2023). It is a powerful and reversible AChE inhibitor with multi-target effect. Its inhibition of AChE is 3 times that of physostigmine and 30 times that of galantamine, and its peripheral adverse reactions are the lowest. Thus, HupA is safe (Xu, ZQ. et al. 2012 ; Wen-Xia, H. et al. 2020 ). Notably, plant extraction is the easiest way to obtain HupA. Unfortunately, the content of HupA in HS is very low. Plant extraction has faced the bottleneck of lack of plant resources. In addition, chemical synthesis to produce HupA is one of the important ways of research and development, but the synthesis steps are complicated and expensive, and it is difficult to obtain pure optically active synthesis with (-)-HupA not with (+)-HupA which has some insurmountable limitations with low activity, high pollution(Wen-Xia, H. et al. 2020 ). (-)-HupA with high activity and high security was derived from the natural plants HS or LS . However, the products of chemical synthesis are mostly (+)-HupA. Notably, the activity of the (-)-HupA product is 30 times higher than that of the (+)-HupA product(Yang, H.L. et, al. 2020). Previous studies have identified five fungi isolated from HS expressing HupA for treating AD (Wen-Xia, H. et al. 2020 ), the aim of the present study was to optimize the culture conditions by cocultivation that used to activate metabolic activity of endophytic fungi to overcome the problem of attenuation of metabolite synthesis and promote HupA further yields. Materials and methods Materials The healthy whole plants of HS were collected in October, 2011 from Guangyuan of Sichuan Province, China. Solvents used for chromatography were of high-performance liquid chromatography (HPLC) grade. Standard HupA (99% purity) (SHA) was from Shanghai Siyu Bio-technology CO., LTD., Shanghai, China. Mouse islet beta cell Min6 (BFN608006398, purchased from Qingzi (Shanghai) Biotechnology Development Co., LTD.), DMEM medium (HYCLONE SH30022.01), fetal bovine serum (GIBCO 10099-141), 0.25% containing EDTA pancreatic enzyme (SC107-01, Cyman Innovation (Beijing) Biotechnology Co., LTD.), Three antibodies (C0224, Biyuntian Biotechnology Co., LTD.), PBS buffer (SC106-01, Cyman Innovation (Beijing) Biotechnology Co., LTD.), Bovine Serum albumin (AR1006, Bode Biotechnology Co., LTD.), palmitic acid (H8780, BHD, BHD) Beijing Solaibao Technology Co., LTD.), dimethyl sulfoxide (AR, commercially available). Bacteria from HS and Preparation of fermentation solution The part of the experiments were carried out according to the endophytic fungal isolation method(Wen-Xia, H. et al. 2020 ).SHA and HupA from endophytic bacteria (BHA) were dissolved to 0.01 mol/L hydrochloric acid solution and prepared into 2, 0.2, 0.02, 0.002, 0.0002 mg/mL mass concentrations.The sample size was 20 µL. Repeat 5 times each time to determine good precision. Identification of Biological Morphological identification of strains All of the strains were inoculated on PDA media at 28℃ for 2 d which were observed and Identificated by LM( light microscope ,eclipse 55i, Nikon, Japan) and STEM(scanning transmission electron microscopy, Talos F200iS/TEM, FEI, Netherlands). Biochemical identification of strains The fresh bacterial solution of isolated strain was coated with PDA media and the bacterial morphology were observed under microscope. The relevant tests were performed according to the instructions of biochemical identification tests containing Ornithine, Glucose, Lactose, Galactose, Mannose, Urea, Nitrate reduction, Sucrose, Sorbose, Natrium citricum, V-P, MR, Indole test. Molecular identification of strains 16SrDNA was extracted and amplified. The primer sequence was 27F: 5 '-AGAGTTTGATCCTGGCTCAG-3'; 1492R: 5 '-TACGGCTACCTTGTTACGACTT-3'. The PCR reaction system consisted of adding Super Mix 15µL, Primer F (10p) 1µL, Primer R (10p) 1µL, template (ng/µL) 1µL, ddH 2 O 12µL, and total volume 30µL. PCR cycle condition predegeneration at 96℃ for 5min; 35 cycles were repeated at 96 ° C (20 sec) 62 ° C (20 sec) 72 ° C (30 sec). Repair extended at 72℃ for 10 min; The reaction was terminated at 16℃. PCR products were identified and sequenced by Beijing Liuhe Bada Gene Technology Co., LTD. NCBI-BLAST comparison The analyses were conducted in MEGA 7. HPLC and NMR This part refered to the conventional determination method (Wang Bo et al. 2024 ). Molecular docking Download the AchE protein structure (PDB ID: IE66) from the RCSB PDB database (RCSB PDB: Homepage) and prepare the IE66 protein structure using the Glide module in Schrödinger software. By this module, the loop missing chain of protein was compensated with hydrogen atom added, water atom in protein removed, energy of protein minimized under OPLS4 force field. Ligprep module was used to optimize the structure of HupA compounds. The Receptor Grid Generation module in Schrödinger software was used to construct the centered of 20 Å grid file on the co-crystalline compound on the basis of the processed protein, and the co-crystalline compound and HupA compound were interconnected with the AchE protein structure in a super standard precision mode. The protective effect of (-)-HupA on β-cells of pancreatic islets The Cell type was mouse islet beta cell Min6 and the control model was mouse islet beta cell Min6 stimulated by palmic acid. The drug type was biosynthetic drug (-)-HupA and other screened drugs. Cell passage and culture The cells were cultured at 37℃, 5% CO 2 incubator till to the cell fusion degree reached 80%, and were passed. The complete medium was sucked out and washed gently with PBS buffer twice. 1 mL trypsin containing EDTA with the concentration of 0.25% was added. After digestion for 1.5 min, the cells were washed off with complete medium (DMEM medium + 1% triantibody + 10% fetal bovine serum). Centrifuge at 1000 r/min for 5 min, discard the supernatant to collect the cells, spread them into T25 culture bottles for culture with 5 parallels, add 5 mL complete medium for each, disperse the cells evenly, and then place them in the cell incubator for culture. Solution configuration Bovine serum albumin (BSA) powder with 1.0g was accurately weighed which was dissolved fully with PBS buffer and fixed volume to 10 mL, filtered and sterilized, and stored at -20℃after subpacking. Palmitate (PA) powder with 359.002 mg was weighed accurately and ultrasonic dissolved with 1.0 mL anhydrous ethanol. After dilution with anhydrous ethanol, it was diluted with 10% sterile BSA at the ratio of 1:19 to prepare 30 mM working liquid, which was used on the go. Different concentrations of PA working liquid were prepared to observe the effect of different concentrations of PA on cell activity and determine the optimal stimulation concentration. Weigh different compounds accurately, add dimethyl sulfoxide and dissolve to 25 mM. Dilute with PBS buffer into 10 mM working liquid and store at -20℃ for later use. The protective effect of HupA isolated from endophytic bacteria on cells When the fusion degree of Min6 cells reached 80%, the cells were inoculated uniformly in 96-well culture plates and cultured overnight in a 5% CO 2 incubator at 37℃. The final concentration of PA in the culture medium was 300 µM by adding different concentrations of PA working fluid. After PA stimulating with 24 hours, CCK8 reagent was used to measure cell viability. When the fusion degree of Min6 cells reached 80%, the cells were inoculated uniformly in 96-well culture plates and cultured overnight in a 5% CO 2 incubator at 37℃. Compound solution with final concentration of 100 µM was added for pre-protection with 30 min, and PA with final concentration of 300 µM was added for incubation with 24 hours. Then CCK8 reagent was used to measure cell viability. Results HupA-producing symbiotic strain isolated from HS Six endophytic bacteria were isolated from the wild HS and four with high activity of HupA producing were selected (Fig. 1 A). Among them, one strain named No.3 (Fig. 1 B)have the advantage of high yield HupA when cocultured with endophytic fungus Trichoderma harzianum NSW-V obtained from HS (Fig. 1 C, Fig. 2 F) producing HupA ( Wen-Xia, H. et al. 2020 ). As shown in Fig. 1 , endophytic fungus Trichoderma harzianum NSW-V was cultured alone(Fig. 1 D), which cultured with strain named No.3 (Fig. 1 E). Yielding of HupA The No.3 strain was coded CGMCC No.21397 with the yielding of HupA to be 32.175 ± 0.13mg/L by HPLC when it was cultured alone((Fig. 2 C). And more, when it was cultured with endophytic fungus Trichoderma harzianum NSW-V, the yielding of HupA was 32.597 ± 0.19 mg/L by HPLC((Fig. 2 F), when it was isolated from the co-culture environment with Trichoderma harzianum NSW-V, the yielding of HupA was 32.976 ± 0.21 mg/L by HPLC(Fig. 2 G). These results indicate that co-culture environment can promote the production of HupA. In particular, when the capacity of producing HupA decreased, co-culture could activate the strain's capacity to produce HupA . Crystallization of HupA The product of HupA obtained from endophytic bacteria (BHA) had a high initial degree and the crystal precipitation was shown in Fig. 3 . Morphological characteristics No.3 strain as above mentioned was cultivated in PDA medium and grew well after 2 d at 25℃(Fig. 4 A). The morphological characteristics was observed through light microscope and STEM. The morphological characteristics of the strain colonies were round, smooth, moist, protruding, milky white without pigment production, large and sticky on solid medium(Fig. 4 A- 1 ,Fig. 4 A- 2 ). The strain was gram negative, with various forms, nearly spherical and short rod-shaped(Fig. 4 B, Fig. 4 C- 1 ). It can be clearly seen capsules (Fig. 4 D, E- 2 , F- 1 )and spores (Fig. 4 E- 3 , F- 2 ) on some of the bacteria through STEM. The STEM images revealed that the strain was multiplied by direct division (Fig. 4 G, H) and DNA was clearly observed(Fig. 4 E- 1 ). Physiological and biochemical identification The biochemical identification results were shown in Table 1 , which were consistent with the biological characteristics of Serratia marcescens . The isolated strain No. 3 was preliminary identified as Serratia marcescens by morphological observation and physiological and biochemical characteristics which named as Serratia marcescens HL1. Table 1 Biochemical test results Item Results Ornithine + Glucose + Lactose - Galactose - Mannose + Urea - Nitrate reduction - Sucrose + Sorbose + Natrium citricum - V-P test + MR test - Indole test - Notes: “+”positive, “-”negative. The result of PCR and Phylogenetic analysis The amplification band sizes were about 1000–2000 bp for the Serratia marcescens HL1, and there were no heterozygosis (Fig. 5 ). The full uncropped image of PCR amplification and agarose gel electrophoresis was shown(Fig. S1 ). The strains of HL1, which was submitted to GenBank (accession numbers: MW632158, Seq.S1) was further compared by Blast on NCBI. The result was shown in Fig. 6 . The HL1 16S-rDNA was 99.93% similar with Serratia marcescens FY (accession number CP053378.1) and Serratia marcescens AR_0131 (accession number CP029715.1), so the strain HL1 and Serratia marcescens had close evolutionary distance in the phylogenetic tree (Fig. 6 ). As a result, the strain HL1 was identified as Serratia marcescens HL1. Structure determination by NMR By analyzing the data of carbon and hydrogen spectra, the structure of the product of HupA obtained by biosynthesis was consistent with that obtained by plant extraction(Fig. 7 ), which lays a solid foundation for the further implementation of industrialization. Molecular docking It can be seen from the mode of action diagram that the binding cavity was a hydrophobic pocket composed of aromatic amino acids and fat-soluble amino acids (Fig. 8 ). The cavity diagram of the activity of (-)-HupA was obtained from HS (SHA) in acetylcholinesterase( Fig. 8 A). AS result the HupA mainly relies on the hydrophobic force and Pi-Pi interaction when it bound to the pocket. For example, the positively charged ammonium group and the aromatic ring structure formed strong Pi-cation interaction and T-shaped Pi-Pi interaction with Trp279, respectively. It was noteworthy that the binding force of the (-)-HupA was stronger than that of the (+)-HupA. The binding energy affinity for docking of (-)-HupA was − 10.3 kcal/mol(Fig. 8 B), while the binding energy affinity for docking of (+)-HupA was − 4.2 kcal/mol(Fig. 8 C). The docking score was based on the size of binding energy affinity, and the smaller the value, the stronger the binding force. The rules of thumb was as following: affinity> -4 kcal/mol with very weak binding or considered no binding; -7 kcal/mol < affinity≦-4 kcal/mol with the medium binding force; affinity≦ -7 kcal/mol with the strong binding force. The protective effect of HupA isolated from endophytic bacteria on cells The results of CCK8 showed that when PA concentration was 300µM, the cell viability was only 58.2%, so this concentration was selected as the best stimulation concentration. In the model group, it was shown that the cell survival rate was 58.2% after cell injury, and the cell activity was enhanced to 71.1% by adding HupA isolated from endophytic bacteria Serratia marcescens HL1(Table 2 ). Table 2 Protective activity of the compound on Min6 cells stimulated by PA Compound The rate of cell survival BHA 71.1% Model 58.2% Notes: HupA obtained from endophytic bacteria (BHA) . Discussion HupA, which was approved as a Class II new drug in 1994 in China, is a highly reversible and selective AChEI as a first-line drug for AD. Compared with similar drugs approved by the FDA, plant-derived HupA has the advantages of easy penetration of the blood-brain barrier, good safety, high oral bioavailability, long action time and minimal adverse reactions. Due to the shortage of plant resources, biosynthesis provides an important way to obtain highly active HupA. Serratia marcescens is widely found in the natural environment, such as soil, water, plants and animal intestines. It can also be found in the gut of humans and animals as part of the normal flora, but can sometimes cause infections, especially in individuals with compromised immunity. However, this does not affect its application as a source of strains for the production of important secondary metabolites. In terms of industrial applications, Serratia marcescens has several uses in biotechnology. For example, exopolysaccharides are produced, which may be used as drug carriers or food additives(Chen, X et al. 2025 ). In addition, it is also used in biodegradation research, such as breaking down certain plastics or pollutants. Serratia marcescens with ability of good adsorption capability (Shen, J et al. 2021 ), improving soil biological properties (Li, L. et al. 2019 ), producing (2R, 3R)-butanediol (Sun, T. et al. 2023 ), an excellent benzo (a) pyrene degrader (Kotoky, R. & Pandey, P. et al. 2020) has been investigated. In addition, it is used as a model organism to study bacterial adhesion, biofilm formation or antibiotic resistance mechanisms(de Oliveira, R.S. et al. 2024). Serratia marcescens can colonize endophytes and promotes the growth of rice plants(de Oliveira, R.S. et al. 2024). Recent research advances may involve genomics, metabolomics analysis, or the development of novel therapeutic approaches, such as phage therapy or antimicrobial peptides(Esteves, N.C. & Scharf, B.E. et al. 2024). In addition, Serratia marcescens applications in synthetic biology, such as the engineered production of specific metabolites, are also areas of interest. In summary, Serratia marcescens is a double-edged sword. As an inherent strain in soil, it plays an important role in ensuring the normal growth of plants and maintaining normal plant flora. And more, this study have also proved that co-culture of this strain with another endophytic strain can greatly improve the yield of secondary metabolites of HupA. The production of HupA by Serratia marcescens has not been reported and HupA as new drug to protect to β-cells of pancreatic islets is of great significance for the treatment of diabetic disease . Abbreviations List of abbreviations were shown in Tab. S1. Declarations Funding The work was sponsored by the Science and Technology Innovation Base-Open and Sharing Platform of Science and Technology Resources Project of Shaanxi Province (2019PT-26), Biological breeding and green synthesis of endangered precious medicinal materials future Industrial Innovation Research Institute(Shaanxi Education No. 30 [2022]), State General Administration of Sport, based on multi-omics to explore the effects of aerobic exercise on the regulatory mechanism of organ and pancreas microenvironment(24KJCX062), Shaanxi Provincial Department of Education service local special(24JC080). Conflicts of interest/Competing interests The work with no conflicts of interest or Competing interests. Availability of data and material Data can be accessed in NCBI. Code availability Not applicable. Authors' contributions Han Wen-Xia was the head of experimental research. Han Zhong-Wen was responsible for the clinical drug research.Mi Yu was the corresponding author. Zhang-Han was responsible for HPLC. Li Wei-Ze carried out the active pharmaceutical ingredients. Guan Li carried out the active pharmaceutical ingredients and the protective effect of HupA isolated from endophytic bacteria on cells. Zhang Ning carried out the data analysis. Wang Lin carried out the strain activation. Jia Min was responsible for NMR. Mei Shan-Shan participated in the coordination. Ethics approval and consent to participate The study protocol was approved by the ethics review board of Northwest University. Clinical trial number Not applicable. Consent for publication All authors approved to submit to the journal we have choose. References Kumar A, Yadav AK (2023) Alzheimer’s Disease and Drug Targets. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. https://doi.org/10.1007/978-981-99-6038-5_1 Dadlani VG, Pawar HA, Tripathi PK (2023) Huperzine-Based Derivatives: Design, Synthesis, and Anti-Alzheimer Activity. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. https://doi.org/10.1007/978-981-99-6038-5_9 Yadav MR, Murumkar PR, Joshi K, Barot R, Yadav R (2023) Approved Cholinesterase Inhibitor-Based Derivatives: Synthesis and Their Biological Evaluation. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. https://doi.org/10.1007/978-981-99-6038-5_7 Kunal Roy (2018) Computational Modeling of Drugs Against Alzheimer’s Disease. Humana, New York Ratia M, Giménez-Llort L, Camps P, Muñoz-Torrero D, Pérez B, Clos MV, Badia A (2013) Huprine X and huperzine A improve cognition and regulate some neurochemical processes related with Alzheimer's disease in triple transgenic mice (3xTg-AD). Neurodegener Dis 11:129–140. 10.1159/000336427 Huang X-T, Qian Z-M, He X, Gong Q, Wu K-C, Jiang L-R, Lu L-N, Zhu Zhou-jing, Zhang H-Y, Yung W-H (2014) Ya Ke Reducing iron in the brain: a novel pharmacologic mechanism of huperzine A in the treatment of Alzheimer's disease. Neurobiol Aging. 35: 1045–1054. 10.1016/j.neurobiolaging.2013.11.004 Xu ZQ, Liang XM, Juan-Wu et al (2012) Treatment with Huperzine A Improves Cognition in Vascular Dementia Patients. Cell Biochem Biophys 62:55–58. https://doi.org/10.1007/s12013-011-9258-5 Wen-Xia H, Zhong-Wen H, Min J et al (2020) Five novel and highly efficient endophytic fungi isolated from Huperzia serrata expressing huperzine A for the treatment of Alzheimer’s disease. Appl Microbiol Biotechnol 104:9159–9177. https://doi.org/10.1007/s00253-020-10894-4 Venkata Ratnam K, Md. Bhakshu L, Raju V, R.R (2022) Herbal Drugs: Its Mechanism to Prevent Alzheimer’s Disease with Special Reference to Non-phenolic Secondary Metabolites. In: Rajagopal S, Ramachandran S, Sundararaman G, Gadde Venkata S (eds) Role of Nutrients in Neurological Disorders. Nutritional Neurosciences. Springer, Singapore. https://doi.org/10.1007/978-981-16-8158-5_16 Wang Bo Y, Xue W, Xu Y, Haibo, Ma Chunxiang( (2024) NMR study on toluene methyl methacrylate methyl acrylate mixture. China Elastomerics 33(6):69–77. https://doi.org/10.16665/j.cnki.issn1005-3174.20240018.012 Shen J, Liang C, Zhong J et al (2021) Adsorption behavior and mechanism of Serratia marcescens for Eu(III) in rare earth wastewater. Environ Sci Pollut Res 28:56915–56926. https://doi.org/10.1007/s11356-021-14668-x Li L, Guo S, Sun Y et al (2019) Detoxification effect of single inoculation and co-inoculation of Oudemansiella radicata and Serratia marcescens on Pb and fluoranthene co-contaminated soil. J Soils Sediments 19:3008–3017. https://doi.org/10.1007/s11368-019-02304-8 Sun T, Liu D, Zhang L et al (2023) Efficient production of (2R, 3R)-butanediol from xylose by an engineered Serratia marcescens . Syst Microbiol Biomanuf. https://doi.org/10.1007/s43393-023-00219-7) Kotoky R, Pandey P (2020) Rhizosphere assisted biodegradation of benzo(a)pyrene by cadmium resistant plant-probiotic Serratia marcescens S2I7, and its genomic traits. Sci Rep 10:5279. https://doi.org/10.1038/s41598-020-62285-4 Chen X, Liu D, Wang L et al (2025) Engineering of farnesyl pyrophosphate hydrolase for farnesol production in Serratia marcescens . Syst Microbiol Biomanuf. https://doi.org/10.1007/s43393-025-00344-5 Esteves NC, Scharf BE (2024) Serratia marcescens ATCC 274 increases production of the red pigment prodigiosin in response to Chi phage infection. Sci Rep 14:17750. https://doi.org/10.1038/s41598-024-68747-3 de Oliveira RS, Gonçalves AR, Ajulo AA et al (2024) Survey and genomic characterization of Serratia marcescens on endophytism, biofilm, and phosphorus solubilization in rice plants. Environ Sci Pollut Res 31:65834–65848. https://doi.org/10.1007/s11356-024-35554-2 Additional Declarations No competing interests reported. Supplementary Files 2025.3.22supplementarymaterials.docx Cite Share Download PDF Status: Posted Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-6221643","acceptedTermsAndConditions":true,"allowDirectSubmit":true,"archivedVersions":[],"articleType":"Research Article","associatedPublications":[],"authors":[{"id":434665041,"identity":"ad3dd39a-f601-40ff-bb22-ca4c30c6cef2","order_by":0,"name":"Han Wen-Xia","email":"","orcid":"","institution":"Northwest University","correspondingAuthor":false,"prefix":"","firstName":"Han","middleName":"","lastName":"Wen-Xia","suffix":""},{"id":434665043,"identity":"7809355f-6d61-48ab-86a4-c6cdea94abf1","order_by":1,"name":"Han Zhong-Wen","email":"","orcid":"","institution":"Shaanxi Renda Kangjian Pharmaceutical Biotechnology Co., LTD","correspondingAuthor":false,"prefix":"","firstName":"Han","middleName":"","lastName":"Zhong-Wen","suffix":""},{"id":434665045,"identity":"605d0393-20c7-4a7c-978c-8df7de98f478","order_by":2,"name":"Mi Yu","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAApElEQVRIiWNgGAWjYDACZhBRAWFLkKDlDElaQICxjRQtuu0MbNK88+4kbjjAfPA2D4NdHkEtZodBWrY9A2phS7bmYUguJlbL4dwNB3jMpHkYDiQ2EKdlDkgL/zdStDSAbWEjWguz5Zxjh+tnHmYztpxjkEyElvMHGG+8qTlszHe8+eGNNxV2hLUwMPB/gUQHOE4NCKsHq/1AnLpRMApGwSgYsQAAHbc3GCVTXoAAAAAASUVORK5CYII=","orcid":"","institution":"Northwest University","correspondingAuthor":true,"prefix":"","firstName":"Mi","middleName":"","lastName":"Yu","suffix":""},{"id":434665046,"identity":"4e0cebd6-80ed-4baa-998b-3962ee0800d6","order_by":3,"name":"Zhang Han","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Zhang","middleName":"","lastName":"Han","suffix":""},{"id":434665047,"identity":"dfbdb918-514a-4be1-b7ad-95badf4c8c4a","order_by":4,"name":"Li Wei-Ze","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Li","middleName":"","lastName":"Wei-Ze","suffix":""},{"id":434665048,"identity":"c2e7deed-50a9-4257-983d-bc10afd1b00b","order_by":5,"name":"Guan Li","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Guan","middleName":"","lastName":"Li","suffix":""},{"id":434665051,"identity":"fb616b6d-5f80-4a7d-8104-651bcd42250a","order_by":6,"name":"Zhang Ning","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Zhang","middleName":"","lastName":"Ning","suffix":""},{"id":434665052,"identity":"2c160bb8-14e5-4658-8e18-50ca85dde253","order_by":7,"name":"Wang Lin","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Wang","middleName":"","lastName":"Lin","suffix":""},{"id":434665053,"identity":"32fe7ca6-c562-49d8-b9de-b6482e400bbc","order_by":8,"name":"Jia Min","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Jia","middleName":"","lastName":"Min","suffix":""},{"id":434665054,"identity":"7d5d549a-bf88-4f08-b366-1348567424b1","order_by":9,"name":"Mei Shan-Shan","email":"","orcid":"","institution":"Xi'an Medical University","correspondingAuthor":false,"prefix":"","firstName":"Mei","middleName":"","lastName":"Shan-Shan","suffix":""}],"badges":[],"createdAt":"2025-03-13 16:08:10","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-6221643/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-6221643/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":79838401,"identity":"ce567ad7-9f9f-4ce0-83eb-43cc922962c3","added_by":"auto","created_at":"2025-04-03 11:57:13","extension":"png","order_by":1,"title":"Figure 1","display":"","copyAsset":false,"role":"figure","size":1150455,"visible":true,"origin":"","legend":"\u003cp\u003eMorphological characteristics of bacteria in solid and liquid cultures \u003cstrong\u003eA\u003c/strong\u003e: colonial morphology for four endophytic bacteria with high activity of HupA producing on the upside of PDA medium after 2 d; \u003cstrong\u003eB\u003c/strong\u003e: colonial morphology of the upside of PDA medium for strain No.4 after 2 d; \u003cstrong\u003eC\u003c/strong\u003e: colonial morphology of the upside of PDA medium for endophytic fungus \u003cem\u003eTrichoderma harzianum \u003c/em\u003eNSW-V after 5 d; \u003cstrong\u003eD\u003c/strong\u003e: mycelial pellets of \u003cem\u003eTrichoderma harzianum \u003c/em\u003eNSW-V cultured in PDB alone after 5 d; \u003cstrong\u003eE\u003c/strong\u003e: mycelial pellets of \u003cem\u003eTrichoderma harzianum \u003c/em\u003eNSW-V cocultured with strain No.4 in PDB after 5 d. A,D,E =10 mm; B=5mm, C=15mm.\u003c/p\u003e","description":"","filename":"1.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/bbc2261704bf2c5cbcfa8b63.png"},{"id":79838396,"identity":"e8a2093a-4bb8-49c1-9eb5-72a8abc01b7d","added_by":"auto","created_at":"2025-04-03 11:57:13","extension":"png","order_by":2,"title":"Figure 2","display":"","copyAsset":false,"role":"figure","size":111561,"visible":true,"origin":"","legend":"\u003cp\u003eThe strains of 1 (\u003cstrong\u003eA\u003c/strong\u003e), 2 (\u003cstrong\u003eB\u003c/strong\u003e), 3 (\u003cstrong\u003eC\u003c/strong\u003e), 4 (\u003cstrong\u003eD\u003c/strong\u003e). The Standard HupA (SHA) (\u003cstrong\u003eE\u003c/strong\u003e) as controls; the NO. 3 strain was cultured with \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V(\u003cstrong\u003eF\u003c/strong\u003e), the NO. 3 strain was isolated from the co-culture environment with \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V(\u003cstrong\u003eG\u003c/strong\u003e).\u003c/p\u003e","description":"","filename":"2.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/937a7bb9e6af014e33f3725d.png"},{"id":79838585,"identity":"7efc393c-3346-4213-89c0-9498b2a254e8","added_by":"auto","created_at":"2025-04-03 12:05:13","extension":"png","order_by":3,"title":"Figure 3","display":"","copyAsset":false,"role":"figure","size":366358,"visible":true,"origin":"","legend":"\u003cp\u003eCrystallization of HupA (BHA)\u003c/p\u003e","description":"","filename":"3.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/625696efe26cbb4697673677.png"},{"id":79838584,"identity":"140b5d2c-a0b5-4946-a57e-61d95212fcf3","added_by":"auto","created_at":"2025-04-03 12:05:13","extension":"png","order_by":4,"title":"Figure 4","display":"","copyAsset":false,"role":"figure","size":1207345,"visible":true,"origin":"","legend":"\u003cp\u003eMorphological of strain No.3; \u003cstrong\u003eA\u003c/strong\u003e: colonial morphology of the backside and upside for strain No.3 after 2 d;\u003cstrong\u003e B\u003c/strong\u003e: Morphological characteristics of bacteria with different forms, 1: subcircular, 2: oval to short rod-shaped, 3: rod-shaped; \u003cstrong\u003eC\u003c/strong\u003e: Morphological characteristics of bacteria with different forms, 1: rod-shaped; 2,3: oval to short rod-shaped, 4: subcircular;\u003cstrong\u003e D\u003c/strong\u003e: capsule around the bacterial, arrow indicates the capsule; \u003cstrong\u003eE\u003c/strong\u003e: 1: DNA, 2: capsule, 3: spore; \u003cstrong\u003eF\u003c/strong\u003e: 1:capsule, 2: spore; \u003cstrong\u003eG-H\u003c/strong\u003e: bacterial division. A=12 mm; B=50μmm; C=2μm; D=200 nm; E-H=500 nm.\u003c/p\u003e","description":"","filename":"4.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/c8dc6a5dcaf26d017aac31fb.png"},{"id":79838402,"identity":"8ca11b16-db71-4e16-bb56-1a3157e93400","added_by":"auto","created_at":"2025-04-03 11:57:13","extension":"png","order_by":5,"title":"Figure 5","display":"","copyAsset":false,"role":"figure","size":55531,"visible":true,"origin":"","legend":"\u003cp\u003ePCR amplification and the agarose gel electrophoresis. lane 1: the strain HL1, lane 2:the strain HL1, lane 3: the strain HL1, M: marker (100-2000 bp).\u003c/p\u003e","description":"","filename":"5.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/e96a832eba97353ee57ea09e.png"},{"id":79837772,"identity":"26bbf4a0-cd0c-4c61-ae1c-7c8a628eff8a","added_by":"auto","created_at":"2025-04-03 11:49:13","extension":"jpg","order_by":6,"title":"Figure 6","display":"","copyAsset":false,"role":"figure","size":152560,"visible":true,"origin":"","legend":"\u003cp\u003eEvolutionary history\u003cstrong\u003e \u003c/strong\u003eThe phylogenetic tree constructed from 16S DNA for strain of HL1 was collected from GenBank.\u003c/p\u003e","description":"","filename":"6.jpg","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/86caee42abb33a50ffa78c20.jpg"},{"id":79838408,"identity":"1934090b-faf8-41ba-9ce2-a24723ab6ee3","added_by":"auto","created_at":"2025-04-03 11:57:13","extension":"png","order_by":7,"title":"Figure 7","display":"","copyAsset":false,"role":"figure","size":198391,"visible":true,"origin":"","legend":"\u003cp\u003eDetermination of chemical structure of products of HupA by carbon and hydrogen spectra \u003cstrong\u003e\u0026nbsp;A-1\u003c/strong\u003e: hydrogen spectra of HupA from plant extracts ; \u003cstrong\u003eB-1\u003c/strong\u003e: carbon spectra of HupA from plant extracts; \u003cstrong\u003eA-2\u003c/strong\u003e: hydrogen spectra of HupA from biosynthetic HupA; \u003cstrong\u003eB-2\u003c/strong\u003e: carbon spectra of HupA from biosynthetic HupA\u003c/p\u003e","description":"","filename":"7.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/cdf138fe490e203100472ffe.png"},{"id":79837763,"identity":"cc6c9620-702f-4e95-9c04-96a097654d93","added_by":"auto","created_at":"2025-04-03 11:49:13","extension":"png","order_by":8,"title":"Figure 8","display":"","copyAsset":false,"role":"figure","size":675261,"visible":true,"origin":"","legend":"\u003cp\u003eMolecular docking \u003cstrong\u003eA\u003c/strong\u003e: cavity diagram of the activity of (-)-HupA obtained from \u003cem\u003eHS \u003c/em\u003e(SHA) in acetylcholinesterase;\u003cstrong\u003eB\u003c/strong\u003e: diagram of interaction mode between (-)-HupA obtained from endophytic bacteria (EHA) and key amino acid Trp279 (Pi-cation interaction and T-shaped Pi-Pi interaction); \u003cstrong\u003eC\u003c/strong\u003e: diagram of interaction mode between (+)-HupA obtained from chemical synthesis (CHA) and key amino acid Trp279 (Pi-cation interaction and T-shaped Pi-Pi interaction)\u003c/p\u003e","description":"","filename":"8.png","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/375a443bedd70dd1fb19aa52.png"},{"id":92550085,"identity":"4da71abc-511c-4732-82f0-2eac3b717e3b","added_by":"auto","created_at":"2025-09-30 23:31:27","extension":"pdf","order_by":0,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":5192057,"visible":true,"origin":"","legend":"","description":"","filename":"manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/b21cc98b-7446-4bb9-ad46-ae1b92fbb074.pdf"},{"id":79837756,"identity":"e6552917-2043-4ea3-b6d1-5f7eaf988132","added_by":"auto","created_at":"2025-04-03 11:49:13","extension":"docx","order_by":0,"title":"","display":"","copyAsset":false,"role":"supplement","size":32629,"visible":true,"origin":"","legend":"","description":"","filename":"2025.3.22supplementarymaterials.docx","url":"https://assets-eu.researchsquare.com/files/rs-6221643/v1/fb66ea4c72ea2f557a3d8f63.docx"}],"financialInterests":"No competing interests reported.","formattedTitle":"Co-culture for improving the biosynthesis ability of Huperzine A","fulltext":[{"header":"Introduction","content":"\u003cp\u003eAlzheimer\u0026rsquo;s disease (AD) is one disease marked by gradual dementia and the cognitive function deterioration(Venkata Ratnam, K. et al. \u003cspan citationid=\"CR9\" class=\"CitationRef\"\u003e2022\u003c/span\u003e; Kumar, A. \u0026amp; Yadav, A.K. 2023; Dadlani, V.G. et al. 2023; Yadav, M.R. et al. 2023). The drugs for treating AD include acetylcholinesterase(AChE) inhibitors (AChEIs) containing rivastigmine, donepezil, galantamine, and NMDA receptor antagonist memantine (Yadav, M.R. et al. 2023).\u003c/p\u003e \u003cp\u003eFortunately, Huperzine A (HupA) is one of the AChEIs with good potency and selectivity, especially with the reversible inhibition of AChE (Kunal 2018; Xiaoqiang et al. 2008; Ratia et al. \u003cspan citationid=\"CR5\" class=\"CitationRef\"\u003e2013\u003c/span\u003e; Xiao-Tian et al. 2014; Dadlani, V.G. et al.; 2023). It is a powerful and reversible AChE inhibitor with multi-target effect. Its inhibition of AChE is 3 times that of physostigmine and 30 times that of galantamine, and its peripheral adverse reactions are the lowest. Thus, HupA is safe (Xu, ZQ. et al. \u003cspan citationid=\"CR7\" class=\"CitationRef\"\u003e2012\u003c/span\u003e; Wen-Xia, H. et al. \u003cspan citationid=\"CR8\" class=\"CitationRef\"\u003e2020\u003c/span\u003e). Notably, plant extraction is the easiest way to obtain HupA.\u003c/p\u003e \u003cp\u003eUnfortunately, the content of HupA in \u003cem\u003eHS\u003c/em\u003e is very low. Plant extraction has faced the bottleneck of lack of plant resources. In addition, chemical synthesis to produce HupA is one of the important ways of research and development, but the synthesis steps are complicated and expensive, and it is difficult to obtain pure optically active synthesis with (-)-HupA not with (+)-HupA which has some insurmountable limitations with low activity, high pollution(Wen-Xia, H. et al. \u003cspan citationid=\"CR8\" class=\"CitationRef\"\u003e2020\u003c/span\u003e). (-)-HupA with high activity and high security was derived from the natural plants \u003cem\u003eHS\u003c/em\u003e or \u003cem\u003eLS\u003c/em\u003e. However, the products of chemical synthesis are mostly (+)-HupA. Notably, the activity of the (-)-HupA product is 30 times higher than that of the (+)-HupA product(Yang, H.L. et, al. 2020).\u003c/p\u003e \u003cp\u003ePrevious studies have identified five fungi isolated from \u003cem\u003eHS\u003c/em\u003e expressing HupA for treating AD (Wen-Xia, H. et al. \u003cspan citationid=\"CR8\" class=\"CitationRef\"\u003e2020\u003c/span\u003e), the aim of the present study was to optimize the culture conditions by cocultivation that used to activate metabolic activity of endophytic fungi to overcome the problem of attenuation of metabolite synthesis and promote HupA further yields.\u003c/p\u003e"},{"header":"Materials and methods","content":"\u003cdiv id=\"Sec3\" class=\"Section2\"\u003e \u003ch2\u003eMaterials\u003c/h2\u003e \u003cp\u003eThe healthy whole plants of \u003cem\u003eHS\u003c/em\u003e were collected in October, 2011 from Guangyuan of Sichuan Province, China. Solvents used for chromatography were of high-performance liquid chromatography (HPLC) grade. Standard HupA (99% purity) (SHA) was from Shanghai Siyu Bio-technology CO., LTD., Shanghai, China. Mouse islet beta cell Min6 (BFN608006398, purchased from Qingzi (Shanghai) Biotechnology Development Co., LTD.), DMEM medium (HYCLONE SH30022.01), fetal bovine serum (GIBCO 10099-141), 0.25% containing EDTA pancreatic enzyme (SC107-01, Cyman Innovation (Beijing) Biotechnology Co., LTD.), Three antibodies (C0224, Biyuntian Biotechnology Co., LTD.), PBS buffer (SC106-01, Cyman Innovation (Beijing) Biotechnology Co., LTD.), Bovine Serum albumin (AR1006, Bode Biotechnology Co., LTD.), palmitic acid (H8780, BHD, BHD) Beijing Solaibao Technology Co., LTD.), dimethyl sulfoxide (AR, commercially available).\u003c/p\u003e \u003cp\u003e \u003cb\u003eBacteria from\u003c/b\u003e \u003cb\u003eHS\u003c/b\u003e \u003cb\u003eand Preparation of fermentation solution\u003c/b\u003e\u003c/p\u003e \u003cp\u003eThe part of the experiments were carried out according to the endophytic fungal isolation method(Wen-Xia, H. et al. \u003cspan citationid=\"CR8\" class=\"CitationRef\"\u003e2020\u003c/span\u003e).SHA and HupA from endophytic bacteria (BHA) were dissolved to 0.01 mol/L hydrochloric acid solution and prepared into 2, 0.2, 0.02, 0.002, 0.0002 mg/mL mass concentrations.The sample size was 20 \u0026micro;L. Repeat 5 times each time to determine good precision.\u003c/p\u003e \u003c/div\u003e\n\u003ch3\u003eIdentification of Biological\u003c/h3\u003e\n\u003cdiv id=\"Sec5\" class=\"Section2\"\u003e \u003ch2\u003eMorphological identification of strains\u003c/h2\u003e \u003cp\u003eAll of the strains were inoculated on PDA media at 28℃ for 2 d which were observed and Identificated by LM( light microscope ,eclipse 55i, Nikon, Japan) and STEM(scanning transmission electron microscopy, Talos F200iS/TEM, FEI, Netherlands).\u003c/p\u003e \u003c/div\u003e\n\u003ch3\u003eBiochemical identification of strains\u003c/h3\u003e\n\u003cp\u003eThe fresh bacterial solution of isolated strain was coated with PDA media and the bacterial morphology were observed under microscope. The relevant tests were performed according to the instructions of biochemical identification tests containing Ornithine, Glucose, Lactose, Galactose, Mannose, Urea, Nitrate reduction, Sucrose, Sorbose, Natrium citricum, V-P, MR, Indole test.\u003c/p\u003e\n\u003ch3\u003eMolecular identification of strains\u003c/h3\u003e\n\u003cp\u003e16SrDNA was extracted and amplified. The primer sequence was 27F: 5 '-AGAGTTTGATCCTGGCTCAG-3'; 1492R: 5 '-TACGGCTACCTTGTTACGACTT-3'. The PCR reaction system consisted of adding Super Mix 15\u0026micro;L, Primer F (10p) 1\u0026micro;L, Primer R (10p) 1\u0026micro;L, template (ng/\u0026micro;L) 1\u0026micro;L, ddH\u003csub\u003e2\u003c/sub\u003eO 12\u0026micro;L, and total volume 30\u0026micro;L. PCR cycle condition predegeneration at 96℃ for 5min; 35 cycles were repeated at 96 \u0026deg; C (20 sec) 62 \u0026deg; C (20 sec) 72 \u0026deg; C (30 sec). Repair extended at 72℃ for 10 min; The reaction was terminated at 16℃. PCR products were identified and sequenced by Beijing Liuhe Bada Gene Technology Co., LTD.\u003c/p\u003e \u003cdiv id=\"Sec8\" class=\"Section2\"\u003e \u003ch2\u003eNCBI-BLAST comparison\u003c/h2\u003e \u003cp\u003eThe analyses were conducted in MEGA 7.\u003c/p\u003e \u003c/div\u003e\n\u003ch3\u003eHPLC and NMR\u003c/h3\u003e\n\u003cp\u003eThis part refered to the conventional determination method (Wang Bo et al. \u003cspan citationid=\"CR10\" class=\"CitationRef\"\u003e2024\u003c/span\u003e).\u003c/p\u003e\n\u003ch3\u003eMolecular docking\u003c/h3\u003e\n\u003cp\u003eDownload the AchE protein structure (PDB ID: IE66) from the RCSB PDB database (RCSB PDB: Homepage) and prepare the IE66 protein structure using the Glide module in Schr\u0026ouml;dinger software. By this module, the loop missing chain of protein was compensated with hydrogen atom added, water atom in protein removed, energy of protein minimized under OPLS4 force field. Ligprep module was used to optimize the structure of HupA compounds.\u003c/p\u003e \u003cp\u003eThe Receptor Grid Generation module in Schr\u0026ouml;dinger software was used to construct the centered of 20 \u0026Aring; grid file on the co-crystalline compound on the basis of the processed protein, and the co-crystalline compound and HupA compound were interconnected with the AchE protein structure in a super standard precision mode.\u003c/p\u003e \u003cdiv id=\"Sec11\" class=\"Section2\"\u003e \u003ch2\u003eThe protective effect of (-)-HupA on β-cells of pancreatic islets\u003c/h2\u003e \u003cp\u003eThe Cell type was mouse islet beta cell Min6 and the control model was mouse islet beta cell Min6 stimulated by palmic acid. The drug type was biosynthetic drug (-)-HupA and other screened drugs.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec12\" class=\"Section2\"\u003e \u003ch2\u003eCell passage and culture\u003c/h2\u003e \u003cp\u003eThe cells were cultured at 37℃, 5% CO\u003csub\u003e2\u003c/sub\u003e incubator till to the cell fusion degree reached 80%, and were passed. The complete medium was sucked out and washed gently with PBS buffer twice. 1 mL trypsin containing EDTA with the concentration of 0.25% was added. After digestion for 1.5 min, the cells were washed off with complete medium (DMEM medium\u0026thinsp;+\u0026thinsp;1% triantibody\u0026thinsp;+\u0026thinsp;10% fetal bovine serum). Centrifuge at 1000 r/min for 5 min, discard the supernatant to collect the cells, spread them into T25 culture bottles for culture with 5 parallels, add 5 mL complete medium for each, disperse the cells evenly, and then place them in the cell incubator for culture.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec13\" class=\"Section2\"\u003e \u003ch2\u003eSolution configuration\u003c/h2\u003e \u003cp\u003eBovine serum albumin (BSA) powder with 1.0g was accurately weighed which was dissolved fully with PBS buffer and fixed volume to 10 mL, filtered and sterilized, and stored at -20℃after subpacking. Palmitate (PA) powder with 359.002 mg was weighed accurately and ultrasonic dissolved with 1.0 mL anhydrous ethanol. After dilution with anhydrous ethanol, it was diluted with 10% sterile BSA at the ratio of 1:19 to prepare 30 mM working liquid, which was used on the go. Different concentrations of PA working liquid were prepared to observe the effect of different concentrations of PA on cell activity and determine the optimal stimulation concentration. Weigh different compounds accurately, add dimethyl sulfoxide and dissolve to 25 mM. Dilute with PBS buffer into 10 mM working liquid and store at -20℃ for later use.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec14\" class=\"Section2\"\u003e \u003ch2\u003eThe protective effect of HupA isolated from endophytic bacteria on cells\u003c/h2\u003e \u003cp\u003eWhen the fusion degree of Min6 cells reached 80%, the cells were inoculated uniformly in 96-well culture plates and cultured overnight in a 5% CO\u003csub\u003e2\u003c/sub\u003e incubator at 37℃. The final concentration of PA in the culture medium was 300 \u0026micro;M by adding different concentrations of PA working fluid. After PA stimulating with 24 hours, CCK8 reagent was used to measure cell viability.\u003c/p\u003e \u003cp\u003eWhen the fusion degree of Min6 cells reached 80%, the cells were inoculated uniformly in 96-well culture plates and cultured overnight in a 5% CO\u003csub\u003e2\u003c/sub\u003e incubator at 37℃. Compound solution with final concentration of 100 \u0026micro;M was added for pre-protection with 30 min, and PA with final concentration of 300 \u0026micro;M was added for incubation with 24 hours. Then CCK8 reagent was used to measure cell viability.\u003c/p\u003e \u003c/div\u003e"},{"header":"Results","content":"\u003cp\u003e \u003cb\u003eHupA-producing symbiotic strain isolated from\u003c/b\u003e \u003cb\u003eHS\u003c/b\u003e\u003c/p\u003e \u003cp\u003eSix endophytic bacteria were isolated from the wild \u003cem\u003eHS\u003c/em\u003e and four with high activity of HupA producing were selected (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eA). Among them, one strain named No.3 (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eB)have the advantage of high yield HupA when cocultured with endophytic fungus \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V obtained from \u003cem\u003eHS\u003c/em\u003e(Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eC, Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eF) producing HupA \u003cem\u003e(\u003c/em\u003eWen-Xia, H. et al. \u003cspan citationid=\"CR8\" class=\"CitationRef\"\u003e2020\u003c/span\u003e). As shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003e, endophytic fungus \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V was cultured alone(Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eD), which cultured with strain named No.3 (Fig.\u0026nbsp;\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003eE).\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cdiv id=\"Sec16\" class=\"Section2\"\u003e \u003ch2\u003eYielding of HupA\u003c/h2\u003e \u003cp\u003eThe No.3 strain was coded CGMCC No.21397 with the yielding of HupA to be 32.175\u0026thinsp;\u0026plusmn;\u0026thinsp;0.13mg/L by HPLC when it was cultured alone((Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eC). And more, when it was cultured with endophytic fungus \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V, the yielding of HupA was 32.597\u0026thinsp;\u0026plusmn;\u0026thinsp;0.19 mg/L by HPLC((Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eF), when it was isolated from the co-culture environment with \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V, the yielding of HupA was 32.976\u0026thinsp;\u0026plusmn;\u0026thinsp;0.21 mg/L by HPLC(Fig.\u0026nbsp;\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003eG). These results indicate that co-culture environment can promote the production of HupA. In particular, when the capacity of producing HupA decreased, co-culture could activate the strain's capacity to produce HupA .\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec17\" class=\"Section2\"\u003e \u003ch2\u003eCrystallization of HupA\u003c/h2\u003e \u003cp\u003eThe product of HupA obtained from endophytic bacteria (BHA) had a high initial degree and the crystal precipitation was shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003e.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec18\" class=\"Section2\"\u003e \u003ch2\u003eMorphological characteristics\u003c/h2\u003e \u003cp\u003eNo.3 strain as above mentioned was cultivated in PDA medium and grew well after 2 d at 25℃(Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eA). The morphological characteristics was observed through light microscope and STEM. The morphological characteristics of the strain colonies were round, smooth, moist, protruding, milky white without pigment production, large and sticky on solid medium(Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eA-\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003e,Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eA-\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003e ). The strain was gram negative, with various forms, nearly spherical and short rod-shaped(Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eB, Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eC-\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003e). It can be clearly seen capsules (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eD, E-\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003e, F-\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003e)and spores (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eE-\u003cspan refid=\"Fig3\" class=\"InternalRef\"\u003e3\u003c/span\u003e, F-\u003cspan refid=\"Fig2\" class=\"InternalRef\"\u003e2\u003c/span\u003e) on some of the bacteria through STEM. The STEM images revealed that the strain was multiplied by direct division (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eG, H) and DNA was clearly observed(Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003eE-\u003cspan refid=\"Fig1\" class=\"InternalRef\"\u003e1\u003c/span\u003e).\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec19\" class=\"Section2\"\u003e \u003ch2\u003ePhysiological and biochemical identification\u003c/h2\u003e \u003cp\u003eThe biochemical identification results were shown in Table\u0026nbsp;\u003cspan refid=\"Tab1\" class=\"InternalRef\"\u003e1\u003c/span\u003e, which were consistent with the biological characteristics of \u003cem\u003eSerratia marcescens\u003c/em\u003e. The isolated strain No. 3 was preliminary identified as \u003cem\u003eSerratia marcescens\u003c/em\u003e by morphological observation and physiological and biochemical characteristics which named as \u003cem\u003eSerratia marcescens\u003c/em\u003e HL1.\u003c/p\u003e \u003cp\u003e \u003cdiv class=\"gridtable\"\u003e\u003ctable float=\"Yes\" id=\"Tab1\" border=\"1\"\u003e \u003ccaption language=\"En\"\u003e \u003cdiv class=\"CaptionNumber\"\u003eTable 1\u003c/div\u003e \u003cdiv class=\"CaptionContent\"\u003e \u003cp\u003eBiochemical test results\u003c/p\u003e \u003c/div\u003e \u003c/caption\u003e \u003ccolgroup cols=\"2\"\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c1\" colnum=\"1\"\u003e\u003c/div\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c2\" colnum=\"2\"\u003e\u003c/div\u003e \u003cthead\u003e \u003ctr\u003e \u003cth align=\"left\" colname=\"c1\"\u003e \u003cp\u003eItem\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c2\"\u003e \u003cp\u003eResults\u003c/p\u003e \u003c/th\u003e \u003c/tr\u003e \u003c/thead\u003e \u003ctbody\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eOrnithine\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eGlucose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eLactose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eGalactose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eMannose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eUrea\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eNitrate reduction\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eSucrose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eSorbose\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eNatrium citricum\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eV-P test\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e+\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eMR test\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eIndole test\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"left\" colname=\"c2\"\u003e \u003cp\u003e-\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003c/tbody\u003e \u003c/colgroup\u003e \u003ctfoot\u003e \u003ctr\u003e\u003ctd colspan=\"2\"\u003eNotes: \u0026ldquo;+\u0026rdquo;positive, \u0026ldquo;-\u0026rdquo;negative.\u003c/td\u003e\u003c/tr\u003e \u003c/tfoot\u003e \u003c/table\u003e\u003c/div\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec20\" class=\"Section2\"\u003e \u003ch2\u003eThe result of PCR and Phylogenetic analysis\u003c/h2\u003e \u003cp\u003eThe amplification band sizes were about 1000\u0026ndash;2000 bp for the \u003cem\u003eSerratia marcescens\u003c/em\u003e HL1, and there were no heterozygosis (Fig.\u0026nbsp;\u003cspan refid=\"Fig5\" class=\"InternalRef\"\u003e5\u003c/span\u003e). The full uncropped image of PCR amplification and agarose gel electrophoresis was shown(Fig.\u003cspan refid=\"MOESM1\" class=\"InternalRef\"\u003eS1\u003c/span\u003e).\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cp\u003eThe strains of HL1, which was submitted to GenBank (accession numbers: MW632158, Seq.S1) was further compared by Blast on NCBI. The result was shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e. The HL1 16S-rDNA was 99.93% similar with \u003cem\u003eSerratia marcescens\u003c/em\u003e FY (accession number CP053378.1) and \u003cem\u003eSerratia marcescens\u003c/em\u003e AR_0131 (accession number CP029715.1), so the strain HL1 and \u003cem\u003eSerratia marcescens\u003c/em\u003e had close evolutionary distance in the phylogenetic tree (Fig.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e). As a result, the strain HL1 was identified as \u003cem\u003eSerratia marcescens\u003c/em\u003e HL1.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec21\" class=\"Section2\"\u003e \u003ch2\u003eStructure determination by NMR\u003c/h2\u003e \u003cp\u003eBy analyzing the data of carbon and hydrogen spectra, the structure of the product of HupA obtained by biosynthesis was consistent with that obtained by plant extraction(Fig.\u0026nbsp;\u003cspan refid=\"Fig7\" class=\"InternalRef\"\u003e7\u003c/span\u003e), which lays a solid foundation for the further implementation of industrialization.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec22\" class=\"Section2\"\u003e \u003ch2\u003eMolecular docking\u003c/h2\u003e \u003cp\u003eIt can be seen from the mode of action diagram that the binding cavity was a hydrophobic pocket composed of aromatic amino acids and fat-soluble amino acids (Fig.\u0026nbsp;\u003cspan refid=\"Fig8\" class=\"InternalRef\"\u003e8\u003c/span\u003e). The cavity diagram of the activity of (-)-HupA was obtained from HS (SHA) in acetylcholinesterase( Fig.\u0026nbsp;\u003cspan refid=\"Fig8\" class=\"InternalRef\"\u003e8\u003c/span\u003eA). AS result the HupA mainly relies on the hydrophobic force and Pi-Pi interaction when it bound to the pocket. For example, the positively charged ammonium group and the aromatic ring structure formed strong Pi-cation interaction and T-shaped Pi-Pi interaction with Trp279, respectively. It was noteworthy that the binding force of the (-)-HupA was stronger than that of the (+)-HupA. The binding energy affinity for docking of (-)-HupA was \u0026minus;\u0026thinsp;10.3 kcal/mol(Fig.\u0026nbsp;\u003cspan refid=\"Fig8\" class=\"InternalRef\"\u003e8\u003c/span\u003eB), while the binding energy affinity for docking of (+)-HupA was \u0026minus;\u0026thinsp;4.2 kcal/mol(Fig.\u0026nbsp;\u003cspan refid=\"Fig8\" class=\"InternalRef\"\u003e8\u003c/span\u003eC). The docking score was based on the size of binding energy affinity, and the smaller the value, the stronger the binding force. The rules of thumb was as following: affinity\u0026gt; -4 kcal/mol with very weak binding or considered no binding; -7 kcal/mol\u0026thinsp;\u0026lt;\u0026thinsp;affinity≦-4 kcal/mol with the medium binding force; affinity≦ -7 kcal/mol with the strong binding force.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cdiv id=\"Sec23\" class=\"Section3\"\u003e \u003ch2\u003eThe protective effect of HupA isolated from endophytic bacteria on cells\u003c/h2\u003e \u003cp\u003eThe results of CCK8 showed that when PA concentration was 300\u0026micro;M, the cell viability was only 58.2%, so this concentration was selected as the best stimulation concentration. In the model group, it was shown that the cell survival rate was 58.2% after cell injury, and the cell activity was enhanced to 71.1% by adding HupA isolated from endophytic bacteria \u003cem\u003eSerratia marcescens\u003c/em\u003e HL1(Table\u0026nbsp;\u003cspan refid=\"Tab2\" class=\"InternalRef\"\u003e2\u003c/span\u003e).\u003c/p\u003e \u003cp\u003e \u003cdiv class=\"gridtable\"\u003e\u003ctable float=\"Yes\" id=\"Tab2\" border=\"1\"\u003e \u003ccaption language=\"En\"\u003e \u003cdiv class=\"CaptionNumber\"\u003eTable 2\u003c/div\u003e \u003cdiv class=\"CaptionContent\"\u003e \u003cp\u003eProtective activity of the compound on Min6 cells stimulated by PA\u003c/p\u003e \u003c/div\u003e \u003c/caption\u003e \u003ccolgroup cols=\"2\"\u003e \u003cdiv align=\"left\" class=\"colspec\" colname=\"c1\" colnum=\"1\"\u003e\u003c/div\u003e \u003cdiv align=\"char\" char=\".\" class=\"colspec\" colname=\"c2\" colnum=\"2\"\u003e\u003c/div\u003e \u003cthead\u003e \u003ctr\u003e \u003cth align=\"left\" colname=\"c1\"\u003e \u003cp\u003eCompound\u003c/p\u003e \u003c/th\u003e \u003cth align=\"left\" colname=\"c2\"\u003e \u003cp\u003eThe rate of cell survival\u003c/p\u003e \u003c/th\u003e \u003c/tr\u003e \u003c/thead\u003e \u003ctbody\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eBHA\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"char\" char=\".\" colname=\"c2\"\u003e \u003cp\u003e71.1%\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003ctr\u003e \u003ctd align=\"left\" colname=\"c1\"\u003e \u003cp\u003eModel\u003c/p\u003e \u003c/td\u003e \u003ctd align=\"char\" char=\".\" colname=\"c2\"\u003e \u003cp\u003e58.2%\u003c/p\u003e \u003c/td\u003e \u003c/tr\u003e \u003c/tbody\u003e \u003c/colgroup\u003e \u003ctfoot\u003e \u003ctr\u003e\u003ctd colspan=\"2\"\u003eNotes: HupA obtained from endophytic bacteria (BHA) .\u003c/td\u003e\u003c/tr\u003e \u003c/tfoot\u003e \u003c/table\u003e\u003c/div\u003e \u003c/p\u003e \u003c/div\u003e \u003c/div\u003e"},{"header":"Discussion","content":"\u003cp\u003eHupA, which was approved as a Class II new drug in 1994 in China, is a highly reversible and selective AChEI as a first-line drug for AD. Compared with similar drugs approved by the FDA, plant-derived HupA has the advantages of easy penetration of the blood-brain barrier, good safety, high oral bioavailability, long action time and minimal adverse reactions. Due to the shortage of plant resources, biosynthesis provides an important way to obtain highly active HupA.\u003c/p\u003e \u003cp\u003e \u003cem\u003eSerratia marcescens\u003c/em\u003e is widely found in the natural environment, such as soil, water, plants and animal intestines. It can also be found in the gut of humans and animals as part of the normal flora, but can sometimes cause infections, especially in individuals with compromised immunity. However, this does not affect its application as a source of strains for the production of important secondary metabolites. In terms of industrial applications, \u003cem\u003eSerratia marcescens\u003c/em\u003e has several uses in biotechnology. For example, exopolysaccharides are produced, which may be used as drug carriers or food additives(Chen, X et al. \u003cspan citationid=\"CR15\" class=\"CitationRef\"\u003e2025\u003c/span\u003e). In addition, it is also used in biodegradation research, such as breaking down certain plastics or pollutants. \u003cem\u003eSerratia marcescens\u003c/em\u003e with ability of good adsorption capability (Shen, J et al. \u003cspan citationid=\"CR11\" class=\"CitationRef\"\u003e2021\u003c/span\u003e), improving soil biological properties (Li, L. et al. \u003cspan citationid=\"CR12\" class=\"CitationRef\"\u003e2019\u003c/span\u003e), producing (2R, 3R)-butanediol (Sun, T. et al. \u003cspan citationid=\"CR13\" class=\"CitationRef\"\u003e2023\u003c/span\u003e), an excellent benzo (a) pyrene degrader (Kotoky, R. \u0026amp; Pandey, P. et al. 2020) has been investigated. In addition, it is used as a model organism to study bacterial adhesion, biofilm formation or antibiotic resistance mechanisms(de Oliveira, R.S. et al. 2024). \u003cem\u003eSerratia marcescens\u003c/em\u003e can colonize endophytes and promotes the growth of rice plants(de Oliveira, R.S. et al. 2024). Recent research advances may involve genomics, metabolomics analysis, or the development of novel therapeutic approaches, such as phage therapy or antimicrobial peptides(Esteves, N.C. \u0026amp; Scharf, B.E. et al. 2024). In addition, \u003cem\u003eSerratia marcescens\u003c/em\u003e applications in synthetic biology, such as the engineered production of specific metabolites, are also areas of interest.\u003c/p\u003e \u003cp\u003eIn summary, \u003cem\u003eSerratia marcescens\u003c/em\u003e is a double-edged sword. As an inherent strain in soil, it plays an important role in ensuring the normal growth of plants and maintaining normal plant flora. And more, this study have also proved that co-culture of this strain with another endophytic strain can greatly improve the yield of secondary metabolites of HupA. The production of HupA by \u003cem\u003eSerratia marcescens\u003c/em\u003e has not been reported and HupA as new drug to protect to β-cells of pancreatic islets is of great significance for the treatment of diabetic disease .\u003c/p\u003e"},{"header":"Abbreviations","content":"\u003cp\u003eList of abbreviations were shown in Tab. S1. \u0026nbsp;\u003c/p\u003e"},{"header":"Declarations","content":"\u003cp\u003e\u003cstrong\u003eFunding\u0026nbsp;\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe work was sponsored by the\u0026nbsp;Science\u0026nbsp;and\u0026nbsp;Technology\u0026nbsp;Innovation\u0026nbsp;Base-Open\u0026nbsp;and\u0026nbsp;Sharing\u0026nbsp;Platform\u0026nbsp;of\u0026nbsp;Science\u0026nbsp;and\u0026nbsp;Technology\u0026nbsp;Resources\u0026nbsp;Project\u0026nbsp;of\u0026nbsp;Shaanxi\u0026nbsp;Province\u0026nbsp;(2019PT-26), Biological breeding and green synthesis of endangered precious medicinal materials future Industrial Innovation Research Institute(Shaanxi Education No. 30 [2022]), State General Administration of Sport, based on multi-omics to explore the effects of aerobic exercise on the regulatory mechanism of organ and pancreas microenvironment(24KJCX062), Shaanxi Provincial Department of Education service local special(24JC080).\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eConflicts of interest/Competing interests\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe work with no conflicts of interest or Competing interests.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eAvailability of data and material\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eData can be accessed in NCBI.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eCode availability\u0026nbsp;\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eNot applicable.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eAuthors' contributions\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eHan Wen-Xia was the head of experimental research. Han Zhong-Wen was responsible for the clinical drug research.Mi Yu was the corresponding author. Zhang-Han was responsible for HPLC. Li Wei-Ze carried out the active pharmaceutical ingredients. Guan Li carried out the active pharmaceutical ingredients and the protective effect of HupA isolated from endophytic bacteria on cells. Zhang Ning carried out the data analysis. Wang Lin carried out the strain activation. Jia Min was responsible for \u0026nbsp;NMR. Mei Shan-Shan participated in the coordination.\u0026nbsp;\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eEthics approval and consent to participate\u0026nbsp;\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe study protocol was approved by the ethics review board of Northwest University.\u0026nbsp;\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eClinical trial number\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eNot applicable.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eConsent for publication\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eAll authors approved to submit to the journal we have choose.\u003c/p\u003e"},{"header":"References","content":"\u003col\u003e\u003cli\u003e\u003cspan\u003eKumar A, Yadav AK (2023) Alzheimer\u0026rsquo;s Disease and Drug Targets. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/978-981-99-6038-5_1\u003c/span\u003e\u003cspan address=\"10.1007/978-981-99-6038-5_1\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eDadlani VG, Pawar HA, Tripathi PK (2023) Huperzine-Based Derivatives: Design, Synthesis, and Anti-Alzheimer Activity. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/978-981-99-6038-5_9\u003c/span\u003e\u003cspan address=\"10.1007/978-981-99-6038-5_9\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eYadav MR, Murumkar PR, Joshi K, Barot R, Yadav R (2023) Approved Cholinesterase Inhibitor-Based Derivatives: Synthesis and Their Biological Evaluation. In: Sharma A, Modi GP (eds) Natural Product-based Synthetic Drug Molecules in Alzheimer's Disease. Springer, Singapore. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/978-981-99-6038-5_7\u003c/span\u003e\u003cspan address=\"10.1007/978-981-99-6038-5_7\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eKunal Roy (2018) Computational Modeling of Drugs Against Alzheimer\u0026rsquo;s Disease. Humana, New York\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eRatia M, Gim\u0026eacute;nez-Llort L, Camps P, Mu\u0026ntilde;oz-Torrero D, P\u0026eacute;rez B, Clos MV, Badia A (2013) Huprine X and huperzine A improve cognition and regulate some neurochemical processes related with Alzheimer's disease in triple transgenic mice (3xTg-AD). Neurodegener Dis 11:129\u0026ndash;140. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003e10.1159/000336427\u003c/span\u003e\u003cspan address=\"10.1159/000336427\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eHuang X-T, Qian Z-M, He X, Gong Q, Wu K-C, Jiang L-R, Lu L-N, Zhu Zhou-jing, Zhang H-Y, Yung W-H (2014) Ya Ke Reducing iron in the brain: a novel pharmacologic mechanism of huperzine A in the treatment of Alzheimer's disease. Neurobiol Aging. 35: 1045\u0026ndash;1054. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003e10.1016/j.neurobiolaging.2013.11.004\u003c/span\u003e\u003cspan address=\"10.1016/j.neurobiolaging.2013.11.004\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eXu ZQ, Liang XM, Juan-Wu et al (2012) Treatment with Huperzine A Improves Cognition in Vascular Dementia Patients. Cell Biochem Biophys 62:55\u0026ndash;58. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s12013-011-9258-5\u003c/span\u003e\u003cspan address=\"10.1007/s12013-011-9258-5\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eWen-Xia H, Zhong-Wen H, Min J et al (2020) Five novel and highly efficient endophytic fungi isolated from \u003cem\u003eHuperzia serrata\u003c/em\u003e expressing huperzine A for the treatment of Alzheimer\u0026rsquo;s disease. Appl Microbiol Biotechnol 104:9159\u0026ndash;9177. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s00253-020-10894-4\u003c/span\u003e\u003cspan address=\"10.1007/s00253-020-10894-4\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eVenkata Ratnam K, Md. Bhakshu L, Raju V, R.R (2022) Herbal Drugs: Its Mechanism to Prevent Alzheimer\u0026rsquo;s Disease with Special Reference to Non-phenolic Secondary Metabolites. In: Rajagopal S, Ramachandran S, Sundararaman G, Gadde Venkata S (eds) Role of Nutrients in Neurological Disorders. Nutritional Neurosciences. Springer, Singapore. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/978-981-16-8158-5_16\u003c/span\u003e\u003cspan address=\"10.1007/978-981-16-8158-5_16\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eWang Bo Y, Xue W, Xu Y, Haibo, Ma Chunxiang( (2024) NMR study on toluene methyl methacrylate methyl acrylate mixture. China Elastomerics 33(6):69\u0026ndash;77. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.16665/j.cnki.issn1005-3174.20240018.012\u003c/span\u003e\u003cspan address=\"10.16665/j.cnki.issn1005-3174.20240018.012\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eShen J, Liang C, Zhong J et al (2021) Adsorption behavior and mechanism of \u003cem\u003eSerratia marcescens\u003c/em\u003e for Eu(III) in rare earth wastewater. Environ Sci Pollut Res 28:56915\u0026ndash;56926. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s11356-021-14668-x\u003c/span\u003e\u003cspan address=\"10.1007/s11356-021-14668-x\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eLi L, Guo S, Sun Y et al (2019) Detoxification effect of single inoculation and co-inoculation of Oudemansiella radicata and \u003cem\u003eSerratia marcescens\u003c/em\u003e on Pb and fluoranthene co-contaminated soil. J Soils Sediments 19:3008\u0026ndash;3017. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s11368-019-02304-8\u003c/span\u003e\u003cspan address=\"10.1007/s11368-019-02304-8\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eSun T, Liu D, Zhang L et al (2023) Efficient production of (2R, 3R)-butanediol from xylose by an engineered \u003cem\u003eSerratia marcescens\u003c/em\u003e. Syst Microbiol Biomanuf. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s43393-023-00219-7)\u003c/span\u003e\u003cspan address=\"10.1007/s43393-023-00219-7)\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eKotoky R, Pandey P (2020) Rhizosphere assisted biodegradation of benzo(a)pyrene by cadmium resistant plant-probiotic \u003cem\u003eSerratia marcescens\u003c/em\u003e S2I7, and its genomic traits. Sci Rep 10:5279. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1038/s41598-020-62285-4\u003c/span\u003e\u003cspan address=\"10.1038/s41598-020-62285-4\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eChen X, Liu D, Wang L et al (2025) Engineering of farnesyl pyrophosphate hydrolase for farnesol production in \u003cem\u003eSerratia marcescens\u003c/em\u003e. Syst Microbiol Biomanuf. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s43393-025-00344-5\u003c/span\u003e\u003cspan address=\"10.1007/s43393-025-00344-5\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eEsteves NC, Scharf BE (2024) \u003cem\u003eSerratia marcescens\u003c/em\u003e ATCC 274 increases production of the red pigment prodigiosin in response to Chi phage infection. Sci Rep 14:17750. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1038/s41598-024-68747-3\u003c/span\u003e\u003cspan address=\"10.1038/s41598-024-68747-3\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003ede Oliveira RS, Gon\u0026ccedil;alves AR, Ajulo AA et al (2024) Survey and genomic characterization of \u003cem\u003eSerratia marcescens\u003c/em\u003e on endophytism, biofilm, and phosphorus solubilization in rice plants. Environ Sci Pollut Res 31:65834\u0026ndash;65848. \u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003ehttps://doi.org/10.1007/s11356-024-35554-2\u003c/span\u003e\u003cspan address=\"10.1007/s11356-024-35554-2\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e\u003c/span\u003e\u003c/li\u003e\u003c/ol\u003e"}],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":true,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":true,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":false,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":false,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true},"keywords":"Huperzine A, Alzheimer's disease, Diabetic disease, Huperzia serrata, Endophytic bacteria, Biosynthesis systems, Serratia marcescens","lastPublishedDoi":"10.21203/rs.3.rs-6221643/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-6221643/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003eHuperzine A (HupA) is for treating Alzheimer's disease(AD) which was mainly extracted from the \u003cem\u003eHuperzia serrata(HS)\u003c/em\u003e. Especially, (-)-HupA extracted from \u003cem\u003eHS\u003c/em\u003e with high inhibitory activity of acetylcholinesterase are scarce and the chemical synthesis of (+)- HupA is high toxicity with low acetylcholinesterase inhibitory activity. In this work, \u003cem\u003eSerratia marcescens\u003c/em\u003e HL1 was firstly found and isolated from \u003cem\u003eHS\u003c/em\u003e, that was identified according to their morphological characteristics and nuclear 16SDNA sequences. It could biosynthesize HupA(BHA) of 32.976\u0026thinsp;\u0026plusmn;\u0026thinsp;0.21 mg/L which was co-cultivated after with endophytic fungi \u003cem\u003eTrichoderma harzianum\u003c/em\u003e NSW-V. Moreover, this bacteria with shorter fermentation time could form better purity and crystal structure with the same physicochemical properties compared to (-)-HupA isolated from \u003cem\u003eHS\u003c/em\u003e(PHA) according to the results of NMR and molecular docking. Furthermore, this study explored new indications for HupA which indicated it could protect β-cells of pancreatic islets.\u003c/p\u003e","manuscriptTitle":"Co-culture for improving the biosynthesis ability of Huperzine A","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2025-04-03 11:49:08","doi":"10.21203/rs.3.rs-6221643/v1","editorialEvents":[{"type":"communityComments","content":0}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"73bc7848-8c3e-48d2-96e6-59e746db18c2","owner":[],"postedDate":"April 3rd, 2025","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"posted","subjectAreas":[],"tags":[],"updatedAt":"2025-09-30T23:23:18+00:00","versionOfRecord":[],"versionCreatedAt":"2025-04-03 11:49:08","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-6221643","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-6221643","identity":"rs-6221643","version":["v1"]},"buildId":"8U1c8b4HqxoKbykW_rLl7","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2025) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00