Referee report. For: EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; referees: 2 approved]

Keywords Endometriosis, Phenome Harmonisation Project, research, clinical history, laparoscopy ALL Metrics - Views Downloads How to cite this article Miller LM and Johnson NP. EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.12688/f1000research.9850.1) NOTE: If applicable, it is important to ensure the information in square brackets after the title is included in all citations of this article. Export Citation Sciwheel EndNote Ref. Manager Bibtex ProCite Sente Select a format first ▬ ✚ Review [version 1; peer review: 2 approved] Laura M. Miller1, Neil P. Johnson2 Laura M. Miller1, Neil P. Johnson2 PUBLISHED 05 Jan 2017 Author details Author details 1 Fertility Plus, Reproductive Endocrinology and Fertility Unit, National Women’s, Greenlane Clinical Centre, Auckland, New Zealand 2 Robinson Research Institute, University of Adelaide, Adelaide, Australia 2 Robinson Research Institute, University of Adelaide, Adelaide, Australia OPEN PEER REVIEW REVIEWER STATUS This article is included in the Endometriosis collection. This article acts as a summary of the recently published papers by the World Endometriosis Research Foundation aiming to set up the Endometriosis Phenome and Biobanking Harmonisation Project. The objective of this project is to standardise recording of patient history and characteristics, recording of surgical procedure and extent of disease as well as collection, processing and storage of specimens and consequently create a reliable resource for research into endometriosis. Endometriosis, Phenome Harmonisation Project, research, clinical history, laparoscopy Corresponding Author(s) Neil P. Johnson ([email protected]) Grant information: The author(s) declared that no grants were involved in supporting this work. Copyright: © 2017 Miller LM and Johnson NP. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. How to cite: Miller LM and Johnson NP. EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.12688/f1000research.9850.1) First published: 05 Jan 2017, 6:14 (https://doi.org/10.12688/f1000research.9850.1) Latest published: 05 Jan 2017, 6:14 (https://doi.org/10.12688/f1000research.9850.1) The World Endometriosis Research Foundation (WERF) set up the Endometriosis Phenome and Biobanking Harmonisation Project (EPHect) which has recently published four papers1–4 aimed at the standardisation of reporting and pathological processing. This consensus was reached after two workshops in 2013 covering all four topics (surgical phenotype;1 clinical and covariate phenotype;2 fluid biospecimen collection, processing and storage;3 tissue collection, processing and storage4) with 54 leaders in endometriosis research, sampling and management worldwide. EPHect is, as far as we are aware, unprecedented in its attempt to provide standards to endeavour to harmonise phenotypic data collection and biological sampling protocols for a specific disease. It remains to be seen whether the initiative will truly attain its objective of facilitating global collaborative research in endometriosis, but the ball is now in the court of national leaders in endometriosis research to ensure that this unique opportunity is not missed. EPHect is primarily designed to “facilitate large-scale internationally collaborative, longitudinal, epidemiologically robust, translational, biomarker and treatment target discovery research in endometriosis” (a more noble endeavour we cannot envisage – and we couldn’t have put it better ourselves!). Although not specifically designed (nor even intended) for such, we believe that this also presents an opportunity for clinical leaders and clinicians even in a purely clinical setting, to harmonise the collection of standardised clinical and co-variate phenotype data1,2. Doing so will mean that we gradually become more fluent in a common endometriosis language and more versed in a true understanding of what has to date appeared a heterogeneous disease, not uncommonly described as an enigma1,2. This level of standardisation of documentation will surely be just as important in the future for optimising patient-focused individualised care as for research. And familiarity with the standard documentation will facilitate clinical leaders to engage in collaborative research efforts seamlessly. Certainly the collection of “standardized detailed information” and “thus optimizing the surgical phenotype”1 should become a non-negotiable standard each time surgery is undertaken for endometriosis, as the recognition dawns that only a small percentage of women suffering from endometriosis worldwide will ever have the chance to undergo surgery. It is thus imperative that as much information as possible is gained each time a woman undergoes laparoscopic surgery for endometriosis and that this information is comparable with any other woman in the world having surgery for endometriosis. Two surgical data forms were created1. The standard (recommended) surgical form (EPHect SSF) and the minimum required surgical form (EPHect MSF). We believe that ‘surgeons with expertise’ (relating to the ‘networks of expertise’ that the World Endometriosis Society consensus group on current management of endometriosis has previously described5) should collect information to complete the SSF. The EPHect SSF has two parts. The first asks for clinical covariates (details of clinical relevance) such as last menstrual period, current medical therapy and previous endometriosis surgery and findings. The second part focuses on intraoperative findings such as duration of procedure, extent of endometriosis (location, size and colour of endometriotic lesions, as well as surgical treatment undertaken), location of biopsies, intraoperative complications, extent of residual endometriosis at the end of the surgery and any other pathological findings. Standardisation of the way in which we undertake surgery is a feature that we have now identified to be lacking in terms of diagnosis and classification of endometriosis5. Thus this EPHect initiative should produce a standardised way in which we all undertake laparoscopy and laparoscopic removal of endometriosis. Specifically, the EPHect laparoscopic surgical technique calls for: - Meticulous search of the entire pelvis and abdominal cavity with a “close tip technique” (2–5 cm distance between laparoscope tip and peritoneal surface) - Limited handling of the peritoneum during the diagnostic phase of the laparoscopy to minimise petechiae formation - Video documentation of exploration and the surgical procedure if possible - Photographic documentation of surgery is considered an acceptable standard and we encourage all endometriosis surgeons to familiarise themselves with the standardised photograph zones (the pelvis is split into seven zones, three in the midline and two for each side, and photographs should be taken with the laparoscope 5–10 cm from the peritoneum). If small lesions or extra-pelvic lesions are present or more detail is deemed appropriate than additional pictures may be required for full documentation. Another additional photograph of the pelvis at the end of the procedure should document any residual disease. - Documentation of other pathology such as adhesions, scarring and uterine fibroids. - Where feasible, the use of electric or light energy should be avoided in removing tissue samples, as these may cause artifacts that may impact on the histological interpretation of tissue samples – and all energy sources used for this purpose should be recorded. The type of thermal energy recommended, if required surgically, is laser or plasma jet, and, in these circumstances, an excision margin of 5 mm is recommended. - Extent of residual endometriosis at the end of the procedure should be described. - The temperature of carbon dioxide insufflation gas entering the peritoneal cavity and the presence or absence of a dehumidifier should be recorded. - When sampling of different tissues is required, the sequence of sampling should be the order of priority, with the most important tissue or tissue of greatest interest being sampled first. Two clinical and covariate phenotype data forms have also been created in a similar fashion to the surgical phenotype data: a standard endometriosis patient questionnaire (EPQ-S) and the minimum required endometriosis patient questionnaire (EPG-M)2. These clinical data, again, are geared towards research, however clinicians must seriously consider moving towards routine clinical data collection in order to manage their patients optimally and to determine how research data translates to their own patient population and to individual women. The EPQ-S includes questions on the following: 1. Pain – Quantified on 11 point scale for intensity (0 being no pain to 10 meaning worse imaginable pain). Pain affect is captured with the short form McGill Pain Questionnaire (SF-MPQ)6. However, it is recommend to use the most recent SF-MPQ -2 as this again uses an 11 point scale and has 7 additional questions and so would allow for calculations on a total of 4 domains (continuous pain, intermittent pain, neuropathic pain and affective). However, investigators are required to sign a user agreement in order to access the SF-MPQ-2. 2. Depression, anxiety, and health related quality of life – There are already multiple validated measures already to assess this. They include the Endometriosis Health Profile Questionnaire (EHP-30)7 or Short-Form Health Status survey,8 but both require registration and/or payment. Beck Depression Inventory9 and State Trait Anxiety Inventory10 are also tools that could be used. Alternatively there are combined measures such as the Hospital Anxiety and Depression Scale11 (however this is more for overall psychological distress rather than determining degree of anxiety or depression). Institutions may decide which scale to adopt. 3. Menstrual history –This includes details on age of menarche, cycle characteristics (including frequency, duration and amount) and changes in menstrual patterns over age ranges, as well as documenting hormone use. 4. Fertility – Information of the length of time a subject has tried to become pregnant without success, with subfertility being assessed as >6 months of trying. Information is gathered on fertility investigation and treatment. Pregnancy history and outcomes are also documented. 5. Medical and surgical history – This section also includes question on urinary symptoms as well as bowel symptoms (including questions from the Rome III12 criteria irritable bowel syndrome module). 6. Medication use – Patterns and type of analgesia/ herbal supplements/ sleeping aid are documented in this segment. 7 Personal information - Ethnicity, age, BMI, (also lowest and highest weight since the age of 18yrs, somatotype and body shape by age range), level of education, smoking, exercise and alcohol consumption. Interestingly also questions on hair and eye colour looking at marking genetic subpopulations. The third and fourth papers in this sequence dealt respectively with standard operating procedures for collection, processing and long term storage of fluid biospecimens3 and tissue4. These papers have less direct relevance to clinicians. The four papers are freely available for clinicians to obtain further information. It is hoped that implementation should be easily achievable as much that is required is standard practice. The project will ensure there is full documentation of patient demographics, history, care, surgical findings and specimen control enabling clinicians everyday gold standard care to be used in robust research studies and finally allowing for a significant sample size to be obtained and hopefully for firm recommendations to be able to made on patient care. Neil Johnson has received conference expenses from Bayer Pharma, Merck-Serono, and MSD, research funding from AbbVie, and is a consultant to Vifor Pharma and Guerbet. F1000 recommendedReferences - 1. Becker CM, Laufer MR, Stratton P, et al.: World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonisation Project: I. Surgical phenotype data collection in endometriosis research. Fertil Steril. 2014; 102(5): 1213–22. PubMed Abstract | Publisher Full Text | Free Full Text - 2. Vitonis AF, Vincent K, Rahmioglu N, et al.: World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonization Project: II. Clinical and covariate phenotype data collection in endometriosis research. Fertil Steril. 2014; 102(5): 1223–32. PubMed Abstract | Publisher Full Text | Free Full Text - 3. Rahmioglu N, Fassbender A, Vitonis AF, et al.: World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonization Project: III. Fluid biospecimen collection, processing, and storage in endometriosis research. Fertil Steril. 2014; 102(5): 1233–1243. PubMed Abstract | Publisher Full Text | Free Full Text - 4. Fassbender A, Rahmioglu N, Vitonis AF, et al.: World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonisation Project: IV. Tissue collection, processing, and storage in endometriosis research. Fertil Steril. 2014; 102(5): 1244–53. PubMed Abstract | Publisher Full Text | Free Full Text - 5. Johnson NP, Hummelshoj L; World Endometriosis Society Montpellier Consortium: Consensus on current management of endometriosis. Hum Reprod. 2013; 28(6): 1552–68. PubMed Abstract | Publisher Full Text - 6. Dworkin RH, Turk DC, Revicki DA, et al.: Development and initial validation of an expanded and revised version of the Short-form McGill Pain Questionnaire (SF-MPQ-2). Pain. 2009; 144(1–2): 35–42. PubMed Abstract | Publisher Full Text - 7. Jones G, Jenkinson C, Kennedy S: Evaluating the responsiveness of the Endometriosis Health Profile Questionnaire: the EHP-30. Qual Life Res. 2004; 13(3): 705–713. PubMed Abstract | Publisher Full Text - 8. Brook RH, Ware JE Jr, Davies-Avery A: A conceptualization and measurement of health for adults in the health insurance study. Santa Monica: Rand Corp. 1979. - 9. Beck AT, Steer RA, Ball R, et al.: Comparison of Beck Depression Inventories -IA and -II in psychiatric outpatients. J Pers Assess. 1996; 67(3): 588–597. PubMed Abstract | Publisher Full Text - 10. Spielberger C, Gorsuch R, Lushene R, et al.: Manual for the State-Trait Anxiety Inventory (form Y). Palo Alto, CA: Consulting Psychologists Press; 1983. - 11. Zigmond AS, Snaith RP: The hospital anxiety and depression scale. Acta Psychiatr Scand. 1983; 67(6): 361–370. PubMed Abstract | Publisher Full Text - 12. Drossman DA, Dumitrascu DL: Rome III: New standard for functional gastrointestinal disorders. J Gastrointestin Liver Dis. 2006; 15: 237–241. PubMed Abstract Author details Author details 1 Fertility Plus, Reproductive Endocrinology and Fertility Unit, National Women’s, Greenlane Clinical Centre, Auckland, New Zealand 2 Robinson Research Institute, University of Adelaide, Adelaide, Australia 2 Robinson Research Institute, University of Adelaide, Adelaide, Australia Competing interests Neil Johnson has received conference expenses from Bayer Pharma, Merck-Serono, and MSD, research funding from AbbVie, and is a consultant to Vifor Pharma and Guerbet. Grant information The author(s) declared that no grants were involved in supporting this work. Copyright © 2017 Miller LM and Johnson NP. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. metrics | Views | Downloads | | |---|---|---| | F1000Research | - | - | | PubMed Central Data from PMC are received and updated monthly. | - | - | Citations CITE how to cite this article Miller LM and Johnson NP. EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.12688/f1000research.9850.1) NOTE: If applicable, it is important to ensure the information in square brackets after the title is included in all citations of this article. track receive updates on this article Track an article to receive email alerts on any updates to this article. Current Reviewer Status: ? Key to Reviewer Statuses VIEW HIDE ApprovedThe paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approvedFundamental flaws in the paper seriously undermine the findings and conclusions Version 1 VERSION 1 PUBLISHED 05 Jan 2017 Views 0 How to cite this report: Porpora MG. Reviewer Report For: EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.5256/f1000research.10620.r22139) The direct URL for this report is: https://f1000research.com/articles/6-14/v1#referee-response-22139 https://f1000research.com/articles/6-14/v1#referee-response-22139 NOTE: it is important to ensure the information in square brackets after the title is included in this citation. Reviewer Report 08 May 2017 Approved VIEWS 0 The aim of this paper is to summarize four articles published by the World Endometriosis Research Foundation, aiming to set up the Endometriosis Phenome and Biobanking Harmonisation Project. This is a global initiative with the mission to develop a consensus on standardization and harmonization of ... Continue reading I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard. Close The aim of this paper is to summarize four articles published by the World Endometriosis Research Foundation, aiming to set up the Endometriosis Phenome and Biobanking Harmonisation Project. This is a global initiative with the mission to develop a consensus on standardization and harmonization of phenotypic surgical/clinical data and biological sample collection methods in endometriosis management and research. It provides forms for collection of data related to surgery, clinical, and epidemiological phenotyping characteristics as well as standard operating procedures, processing, and long-term storage of biological samples from affected women. This project will allow data analysis of a large number of cases using the same forms worldwide, and the possibility of sharing the obtained information. This paper offers a clear and comprehensible recapitulation of the standard surgical forms and standard endometriosis patient questionnaires to facilitate their use by the clinicians in the clinical practice. Nevertheless, this paper does not analyze the limitations of the project such as the possible differences in resources and logistics among centers that could affect data collection and implementation of standard operating procedures. The extent and type of data collected and the effort to record data in an online database could be influenced by availability of time, local organizational structures and experience as well as motivation of the surgeon. This paper offers a clear and comprehensible recapitulation of the standard surgical forms and standard endometriosis patient questionnaires to facilitate their use by the clinicians in the clinical practice. Nevertheless, this paper does not analyze the limitations of the project such as the possible differences in resources and logistics among centers that could affect data collection and implementation of standard operating procedures. The extent and type of data collected and the effort to record data in an online database could be influenced by availability of time, local organizational structures and experience as well as motivation of the surgeon. - Is the topic of the review discussed comprehensively in the context of the current literature? Yes - Are all factual statements correct and adequately supported by citations? Yes - Is the review written in accessible language? Yes - Are the conclusions drawn appropriate in the context of the current research literature? Yes Competing Interests: No competing interests were disclosed. Reviewer Expertise: Clinical and surgical management of endometriosis CITE HOW TO CITE THIS REPORT Porpora MG. Reviewer Report For: EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.5256/f1000research.10620.r22139) The direct URL for this report is: https://f1000research.com/articles/6-14/v1#referee-response-22139 https://f1000research.com/articles/6-14/v1#referee-response-22139 NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article. Views 0 How to cite this report: Lam A. Reviewer Report For: EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.5256/f1000research.10620.r21915) The direct URL for this report is: https://f1000research.com/articles/6-14/v1#referee-response-21915 https://f1000research.com/articles/6-14/v1#referee-response-21915 NOTE: it is important to ensure the information in square brackets after the title is included in this citation. Reviewer Report 18 Apr 2017 Alan Lam, Center for Advanced Reproductive Endosurgery, University of Sydney, St Leonards, Australia Approved VIEWS 0 This review article is a timely ‘call-to-arms’ to clinicians caring for women suffering from endometriosis world-wide to utilise the Endometriosis Phenome and Biobanking Harmonisation Project (EPHect). Published by the World Endometriosis Research Foundation (WERF) in 2014, EPHect ... Continue reading I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard. Close Published by the World Endometriosis Research Foundation (WERF) in 2014, EPHect ... Continue reading This review article is a timely ‘call-to-arms’ to clinicians caring for women suffering from endometriosis world-wide to utilise the Endometriosis Phenome and Biobanking Harmonisation Project (EPHect). Published by the World Endometriosis Research Foundation (WERF) in 2014, EPHect provides a fundamental framework for collaborative international endometriosis research through global standardization of phenotypic data compilation and biological sample collection and storage. Concerned that the uptake of the EPHect has be sporadic and not uniform, the authors believe that the collection of “standardized detailed information”, using the standard surgical form (EPHect SSF) and standard endometriosis patient questionnaire (EPQ-S), should be ‘non-negotiable’ whenever surgery is undertaken for endometriosis. In practice, there are a number of challenges to the uptake of the EPHect which this review article has not addressed. Firstly, the time taken for busy clinicians and surgeons to complete the standard surgical form (SSF) is a potential impediment. Secondly, the completion of the standard endometriosis patient questionnaire (EPQ-S) or the minimum (EPG-M) by patient also requires motivation and time. Thirdly, the storage of the large amount of paper-based information is space-consuming. Fourthly, the transfer of information collected onto an electronic database is time-consuming, with privacy coding an issue. Finally, the storage, extraction, collation and analysis of data for the purpose of collaborative international research is likely going to be an expensive endeavour. Published by the World Endometriosis Research Foundation (WERF) in 2014, EPHect provides a fundamental framework for collaborative international endometriosis research through global standardization of phenotypic data compilation and biological sample collection and storage. Concerned that the uptake of the EPHect has be sporadic and not uniform, the authors believe that the collection of “standardized detailed information”, using the standard surgical form (EPHect SSF) and standard endometriosis patient questionnaire (EPQ-S), should be ‘non-negotiable’ whenever surgery is undertaken for endometriosis. In practice, there are a number of challenges to the uptake of the EPHect which this review article has not addressed. Firstly, the time taken for busy clinicians and surgeons to complete the standard surgical form (SSF) is a potential impediment. Secondly, the completion of the standard endometriosis patient questionnaire (EPQ-S) or the minimum (EPG-M) by patient also requires motivation and time. Thirdly, the storage of the large amount of paper-based information is space-consuming. Fourthly, the transfer of information collected onto an electronic database is time-consuming, with privacy coding an issue. Finally, the storage, extraction, collation and analysis of data for the purpose of collaborative international research is likely going to be an expensive endeavour. Competing Interests: No competing interests were disclosed. Reviewer Expertise: Clinical and surgical management of endometriosis CITE HOW TO CITE THIS REPORT Lam A. Reviewer Report For: EPHect – the Endometriosis Phenome (and Biobanking) Harmonisation Project – may be very helpful for clinicians and the women they are treating [version 1; peer review: 2 approved]. F1000Research 2017, 6:14 (https://doi.org/10.5256/f1000research.10620.r21915) The direct URL for this report is: https://f1000research.com/articles/6-14/v1#referee-response-21915 https://f1000research.com/articles/6-14/v1#referee-response-21915 NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article. 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