Division of labor between seed plant RAB GDI paralogs: insights from genetic analysis in Arabidopsis thaliana

Background RAB Guanine Nucleotide Dissociation Inhibitors (RAB GDIs) are important vesicle transport regulators in eukaryotes, participating in the functional cycle of RAB GTPases by stabilizing their non-active GDP-conformation. Aims We address the importance of the three Arabidopsis thaliana RAB GDI paralogs by genetic and developmental analyses and put these results into the seed plants evolution context.

We use methods of genetics, microscopy and phylogenetics.

Our genetic analyses of Arabidopsis T-DNA insertional mutants confirm recent CRISPR alleles data indicating lethality of double gdi1 gdi2 mutants, and our microscopic data point to embryo development arrest in double mutant seeds. We also confirm the involvement of GDI2 and GDI3 in pollen tube growth. Moreover, our data show that GDI1 also contributes to proper pollen function. Our phylogenetic analysis reveals independent diversification of RAB GDIs in Gymnosperms and Angiosperms, with early specialization of an Angiosperm reproduction-and gametophyte-related clade.

In Arabidopsis, RAB GDI1 and 2 are important for the vegetative growth while RAB GDI2 and 3 are vital for reproduction. Evolution of the RAB GDI family reflects the evolution of seed plants. Highlights RAB GDIs are vital for plant growth and reproduction and act redundantly. Even the low-transcribed RAB GDI1 isoform contributes to the proper pollen function. Two RAB GDI clades evolved in early Angiosperms. Competing Interest Statement The authors have declared no competing interest. Abbreviations - GAP - GTPase Activating Protein - GEF - Guanosine Nucleotide Exchange Factor - GDF - GDI Displacement Factor - GDI - Guanine Nucleotide Dissociation Inhibitors - LOF - Loss of Function - REP - RAB Escort Protein - TSA - Transcriptome Shotgun Assemblies