Nuclear and mitochondrial genome assemblies of Indrella ampulla, a terrestrial gastropod endemic to the Western Ghats

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This study presents high-quality nuclear and mitochondrial genome assemblies for the endemic land snail *Indrella ampulla*, revealing a population decline over the last 100,000 years.

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This paper presents high-quality annotated nuclear and mitochondrial genome assemblies for Indrella ampulla, a forest-dwelling terrestrial land snail endemic to India’s Western Ghats, using a hybrid sequencing approach (Illumina short reads plus Oxford Nanopore long reads) and reporting an N50 of 632 kb and 90.3% BUSCO completeness. The mitochondrial genome assembly is 13,887 bp, and demographic history reconstruction from genomic data indicates signatures of population decline over the last 100,000 years. The caveat is that the work focuses on generating genomic resources and inferring past population dynamics, rather than experimentally resolving specific evolutionary mechanisms. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

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Abstract

Indrella ampulla is a polymorphic, brightly coloured, forest-dwelling land snail endemic to the Western Ghats of India. Studying and understanding evolutionary processes occurring within this species has remained a challenge largely due to a paucity of genomic resources. We present high-quality annotated nuclear and mitochondrial genome assemblies of I. ampulla . The nuclear genome is assembled through a hybrid approach using Illumina short reads and Oxford Nanopore long reads, with an N50 value of 632 kb and 90.3% BUSCO genome completeness. The mitogenome is 13,887 bp long. The demographic history reconstruction based on the genomic data exhibits signatures of population decline during the last 100,000 years. This genome will aid in deciphering the colour polymorphism in I. ampulla and augmenting the general understanding of the evolution of gastropods. Significance Indrella ampulla is a terrestrial gastropod endemic to the Western Ghats biodiversity hotspot, and exhibits color polymorphism. The genome of I. ampulla provides a valuable resource for understanding molluscan biology, coloration genetics, adaptation, and other evolutionary processes. Our historical demographic analysis offers insights into past population dynamics of this species endemic to the Western Ghats of India, contributing to broader research on biodiversity patterns in tropical ecosystems. The bioinformatics pipeline used in this study provides a reliable framework for assembling high-quality genomes with long-read coverage as low as 10X, making it especially useful for gastropods and other species where obtaining high coverage data is a challenge. Overall, this genome will complement future studies in phylogenomics, comparative genomics, and conservation of molluscs.
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Abstract Indrella ampulla is a polymorphic, brightly coloured, forest-dwelling land snail endemic to the Western Ghats of India. Studying and understanding evolutionary processes occurring within this species has remained a challenge largely due to a paucity of genomic resources. We present high-quality annotated nuclear and mitochondrial genome assemblies of I. ampulla. The nuclear genome is assembled through a hybrid approach using Illumina short reads and Oxford Nanopore long reads, with an N50 value of 632 kb and 90.3% BUSCO genome completeness. The mitogenome is 13,887 bp long. The demographic history reconstruction based on the genomic data exhibits signatures of population decline during the last 100,000 years. This genome will aid in deciphering the colour polymorphism in I. ampulla and augmenting the general understanding of the evolution of gastropods. Significance Indrella ampulla is a terrestrial gastropod endemic to the Western Ghats biodiversity hotspot, and exhibits color polymorphism. The genome of I. ampulla provides a valuable resource for understanding molluscan biology, coloration genetics, adaptation, and other evolutionary processes. Our historical demographic analysis offers insights into past population dynamics of this species endemic to the Western Ghats of India, contributing to broader research on biodiversity patterns in tropical ecosystems. The bioinformatics pipeline used in this study provides a reliable framework for assembling high-quality genomes with long-read coverage as low as 10X, making it especially useful for gastropods and other species where obtaining high coverage data is a challenge. Overall, this genome will complement future studies in phylogenomics, comparative genomics, and conservation of molluscs. Competing Interest Statement The authors have declared no competing interest.

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