BridgeBP: A Toolbox for Bridging Brain Parcellations and Standardizing Structural Connectivity Matrices

ABSTRACT Brain network analysis has emerged as a critical framework for understanding the complex organization and function of the human brain, underpinning insights into cognition, behavior, and neuropsychiatric conditions. Central to this approach is the parcellation of the brain into discrete regions, which simplifies high-dimensional connectome data and facilitates the investigation of network architectures. However, the proliferation of brain parcellation schemes introduces significant challenges: different parcellations often yield varying network sizes and measures, complicating cross-study comparisons and the reproducibility of findings. Moreover, most connectome construction pipelines are rigid, typically outputting connectivity matrices from only one or a few parcellation schemes, which limits flexibility. In this paper, we address these issues by introducing BridgeBP, a novel toolbox designed to bridge brain parcellations by leveraging continuous brain connectivity concepts. BridgeBP transforms structural connectivity matrices derived from one parcellation scheme into matrices corresponding to more than 40 alternative schemes, standardizing analyses and enhancing the robustness of network studies. Through extensive evaluations, we demonstrate that BridgeBP enables consistent network comparisons across diverse parcellation frameworks, paving the way for more reproducible and generalizable insights in brain connectome research. Competing Interest Statement The authors have declared no competing interest.