Pleiotropy and the evolutionary stability of plastic phenotypes: a geometric framework

Phenotypic plasticity allows organisms to express different traits in response to different environmental or genetic conditions. Understanding the evolution of conditional phenotypes is challenging because they are not expressed by all members of a population, which allows for the accumulation of deleterious variation due to drift. Theory suggests pleiotropic effects help prevent the decay of conditional phenotypes by exposing the variation accrued neutrally in one context to the effects of purifying selection in an alternative context. However, existing frameworks for describing the evolutionary dynamics of conditional phenotypes are limited in their ability to flexibly model the complex pleiotropic architectures that often underlie conditional phenotypes. To help improve our understanding of the evolutionary stability of conditional phenotypes, here we describe a geometric model that allows for explicit modeling of different fitness optima for conditional and alternative phenotypes, as well as their underlying pleiotropic associations. Using stochastic simulations and mathematical analyses, we show that this model recapitulates and elaborates on existing predictions regarding the role of pleiotropy in maintaining conditional phenotypes. Specifically, we found that more pleiotropic conditional phenotypes experience decreased rates of decay in fitness over periods of inexpression, the effects of which are comparable for phenotypes that are spatially and temporally conditional. Furthermore, the functional form of the relationship between conditional phenotype expression pattern and decay rate is mediated by pleiotropic effect, which provides more explicit hypotheses of when pleiotropic constraint is expected to play a significant role in the evolutionary maintenance of conditional phenotypes. Finally, we found that when pleiotropic architectures evolve over periods of conditional phenotype inexpression, decoupling from other phenotypes readily evolves and facilitates decay in fitness. DOI https://doi.org/10.32942/X2QD3D Subjects Life Sciences

Pleiotropy, Plasticity, Geometric model, plasticity, Geometric model Dates Published: 2025-08-20 21:01 Last Updated: 2025-08-20 21:01 License CC-BY Attribution-NonCommercial 4.0 International Additional Metadata Conflict of interest statement: None Data and Code Availability Statement: All code written for running the model, output analysis, and visualization, as well as files containing the simulated data, are available on GitHub at https://github.com/gabe-dubose/geomcp/tree/main/evaluations. We also wrote a small Python package for running model simulations and investigating analytically derived functions, which is available at \url{https://github.com/gabe-dubose/geomcp. All code and simulated data is also archived via Zenodo at https://doi.org/10.5281/zenodo.15608125 Language: English