WITHDRAWN: SAUNA - Simulated Annealing for Unique Nucleosome Arrangements from Cell-Free DNA-Sequencing Data

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Skip to main content Home About Submit ALERTS / RSS Search for this keyword Advanced Search Withdrawn WITHDRAWN: SAUNA - Simulated Annealing for Unique Nucleosome Arrangements from Cell-Free DNA-Sequencing Data Maria Rafaela Lambrinos , Tara Rahimi , View ORCID Profile Tarun Mehra , View ORCID Profile Michael P Schmid , Nicola Miglino , Anna Romanens , View ORCID Profile Kirsten D Mertz , View ORCID Profile Michael Krauthammer , View ORCID Profile Ronny Nienhold , View ORCID Profile Andreas Wicki , View ORCID Profile Zsolt Balázs doi: https://doi.org/10.1101/2025.04.01.646532 Maria Rafaela Lambrinos 1 Department of Quantitative Biomedicine, University of Zurich , Winterthurerstrasse 190, 8057, Zurich, Switzerland 2 Department of Biomedical Informatics, University Hospital Zurich , Schmelzbergstrasse 26, 8006, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site Tara Rahimi 3 Department of Pathology, University Hospital Zurich , Schmelzbergstrasse 12, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site Tarun Mehra 4 Department of Medical Oncology and Hematology, University Hospital Zurich, University of Zurich , Rämistrasse 100, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Tarun Mehra Michael P Schmid 3 Department of Pathology, University Hospital Zurich , Schmelzbergstrasse 12, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Michael P Schmid Nicola Miglino 4 Department of Medical Oncology and Hematology, University Hospital Zurich, University of Zurich , Rämistrasse 100, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site Anna Romanens 5 Department of Oncology and Hematology, Cantonal Hospital of Baselland , Rheinstrasse 26, 4410 Liestal, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site Kirsten D Mertz 6 Institute of Medical Genetics and Pathology, University Hospital Basel , Schönbeinstrasse 40, 4031 Basel, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Kirsten D Mertz Michael Krauthammer 1 Department of Quantitative Biomedicine, University of Zurich , Winterthurerstrasse 190, 8057, Zurich, Switzerland 2 Department of Biomedical Informatics, University Hospital Zurich , Schmelzbergstrasse 26, 8006, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Michael Krauthammer Ronny Nienhold 3 Department of Pathology, University Hospital Zurich , Schmelzbergstrasse 12, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Ronny Nienhold Andreas Wicki 4 Department of Medical Oncology and Hematology, University Hospital Zurich, University of Zurich , Rämistrasse 100, 8091, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Andreas Wicki Zsolt Balázs 1 Department of Quantitative Biomedicine, University of Zurich , Winterthurerstrasse 190, 8057, Zurich, Switzerland 2 Department of Biomedical Informatics, University Hospital Zurich , Schmelzbergstrasse 26, 8006, Zurich, Switzerland Find this author on Google Scholar Find this author on PubMed Search for this author on this site ORCID record for Zsolt Balázs For correspondence: zsolt.balazs{at}uzh.ch Abstract Info/History Metrics Preview PDF Withdrawal This preprint has been withdrawn by the authors. While the preprint cites the work by Schoepflin et al. (2013) (reference [20] in the preprint), it has been brought to the authors’ attention that the preprint may not appropriately acknowledge the extent to which their work depends on the work by Schoepflin et al. (2013). The authors apologize for this oversight and want to emphasize that they did not intend to misattribute the work of Schoepflin et al. (2013) and want to thank them for the code of NucPosSimulator which is a core component of SAUNA’s algorithm. Therefore, the authors do not wish this work to be cited as reference for the project. For any questions, please contact the corresponding author. Competing Interest Statement The authors have declared no competing interest. Footnotes This preprint has been withdrawn by the authors. While the preprint cites the work by Schoepflin et al. (2013) (reference [20] in the preprint), it has been brought to the authors' attention that the preprint may not appropriately acknowledge the extent to which their work depends on the work by Schoepflin et al. (2013). The authors apologize for this oversight and want to emphasize that they did not intend to misattribute the work of Schoepflin et al. (2013) and want to thank them for the code of NucPosSimulator which is a core component of SAUNA's algorithm. Therefore, the authors do not wish this work to be cited as reference for the project. For any questions, please contact the corresponding author. Copyright The copyright holder has placed this preprint in the Public Domain. It is no longer restricted by copyright. Anyone can legally share, reuse, remix, or adapt this material for any purpose without crediting the original authors. View the discussion thread. Back to top Previous Next Posted August 01, 2025. 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Share WITHDRAWN: SAUNA - Simulated Annealing for Unique Nucleosome Arrangements from Cell-Free DNA-Sequencing Data Maria Rafaela Lambrinos , Tara Rahimi , Tarun Mehra , Michael P Schmid , Nicola Miglino , Anna Romanens , Kirsten D Mertz , Michael Krauthammer , Ronny Nienhold , Andreas Wicki , Zsolt Balázs bioRxiv 2025.04.01.646532; doi: https://doi.org/10.1101/2025.04.01.646532 Share This Article: Copy Citation Tools WITHDRAWN: SAUNA - Simulated Annealing for Unique Nucleosome Arrangements from Cell-Free DNA-Sequencing Data Maria Rafaela Lambrinos , Tara Rahimi , Tarun Mehra , Michael P Schmid , Nicola Miglino , Anna Romanens , Kirsten D Mertz , Michael Krauthammer , Ronny Nienhold , Andreas Wicki , Zsolt Balázs bioRxiv 2025.04.01.646532; doi: https://doi.org/10.1101/2025.04.01.646532 Citation Manager Formats BibTeX Bookends EasyBib EndNote (tagged) EndNote 8 (xml) Medlars Mendeley Papers RefWorks Tagged Ref Manager RIS Zotero Tweet Widget Facebook Like Google Plus One Subject Area Bioinformatics Subject Areas All Articles Animal Behavior and Cognition (7618) Biochemistry (17633) Bioengineering (13856) Bioinformatics (41841) Biophysics (21399) Cancer Biology (18529) Cell Biology (25422) Clinical Trials (138) Developmental Biology (13352) Ecology (19860) Epidemiology (2067) Evolutionary Biology (24282) Genetics (15582) Genomics (22462) Immunology (17700) Microbiology (40295) Molecular Biology (17140) Neuroscience (88419) Paleontology (666) Pathology (2823) Pharmacology and Toxicology (4813) Physiology (7632) Plant Biology (15107) Scientific Communication and Education (2042) Synthetic Biology (4284) Systems Biology (9808) Zoology (2267)