Equus roundworms (Parascaris univalens) are undergoing rapid divergence due to host and environment factors

Background: The evolution of parasites is often directly affected by the host's environment. Studies on the evolution of the same parasites in different hosts are extremely attractive and highly relevant to our understanding of divergence and speciation. Methods Here we performed whole genome sequencing of Parascaris univalens from different Equus hosts (horses, zebras and donkeys). Phylogenetic and selection analysis was performed to study the divergence and adaptability of P. univalens . Results At the genetic level, multiple lines of evidence support that P. univalens were mainly separated into two clades (Horse-derived and Zebra & Donkey-derived). This divergence began at 300-1000 years ago, and we found that most of the key enzymes related to glycolysis were under strong positive selection in zebra & donkey-derived roundworms, but lipid related metabolism system was under positive selection in the horse-derived roundworms, indicating that the adaptive evolution of metabolism may drive the divergence in past few centuries. In addition, we found that some drug-related genes have a significantly higher degree of selection in different populations. Conclusions This work reports evidence that the host’s diet drives the divergence of roundworms for the first time, and also supports that divergence is a continuous and dynamic process, and continuous monitoring of the effects of differences in nutritional and drug history on rapid evolution of roundworms are conducive to further understanding host-parasite interactions.