Multi-Omic Analyses of Dietary Fatty Acid-Microbe-Host Interactions Reveal Metaorganismal Lipid Metabolic Crosstalk Impacting Cardiometabolic Disease

preprint OA: closed
Full text JSON View at publisher

Abstract

Abstract Following a meal, our gut microbiome and human cells collaborate via metaorganismal metabolic circuits to produce diverse nutrient metabolites that systemically circulate to influence health and disease. Although there are now several examples of bacterial fiber-, amino acid-, and micronutrient-derived metabolites impacting cardiometabolic disease, very little is known in regards to how diet-microbe-host interactions impact lipid homeostasis. Here we address this by defining dietary fatty acid substrate availability in germ-free versus conventionally-raised mice coupled to deep multi-omic metabolic phenotyping. Our data demonstrate that the effects of dietary saturated (SFA), monounsaturated (MUFA), and polyunsaturated fatty acids (PUFA) on the host lipidome, transcriptome, proteome and metabolome are uniquely impacted by resident microbiota. Also, the hepatic levels of both pro-inflammatory and pro-resolving lipid mediators are strongly influenced by dietary fatty acid-microbe interactions. This study presents a unique resource to the nutrition and metabolism research community to advance our understanding of metaorganismal lipid metabolism.
Full text 19,339 characters · extracted from preprint-html · click to expand
Multi-Omic Analyses of Dietary Fatty Acid-Microbe-Host Interactions Reveal Metaorganismal Lipid Metabolic Crosstalk Impacting Cardiometabolic Disease | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Resource Multi-Omic Analyses of Dietary Fatty Acid-Microbe-Host Interactions Reveal Metaorganismal Lipid Metabolic Crosstalk Impacting Cardiometabolic Disease J. Mark Brown, Nour Mouannes, Amy Burrows, Anthony Horak, Venkateshwari Varadharajan, and 23 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-9013531/v1 This work is licensed under a CC BY 4.0 License Status: Under Review Version 1 posted You are reading this latest preprint version Abstract Following a meal, our gut microbiome and human cells collaborate via metaorganismal metabolic circuits to produce diverse nutrient metabolites that systemically circulate to influence health and disease. Although there are now several examples of bacterial fiber-, amino acid-, and micronutrient-derived metabolites impacting cardiometabolic disease, very little is known in regards to how diet-microbe-host interactions impact lipid homeostasis. Here we address this by defining dietary fatty acid substrate availability in germ-free versus conventionally-raised mice coupled to deep multi-omic metabolic phenotyping. Our data demonstrate that the effects of dietary saturated (SFA), monounsaturated (MUFA), and polyunsaturated fatty acids (PUFA) on the host lipidome, transcriptome, proteome and metabolome are uniquely impacted by resident microbiota. Also, the hepatic levels of both pro-inflammatory and pro-resolving lipid mediators are strongly influenced by dietary fatty acid-microbe interactions. This study presents a unique resource to the nutrition and metabolism research community to advance our understanding of metaorganismal lipid metabolism. Health sciences/Endocrinology/Endocrine system and metabolic diseases/Metabolic syndrome Biological sciences/Biochemistry/Lipids/Membrane lipids Nutrition Microbiome Metabolism Lipid Metabolomics Full Text Additional Declarations Yes there is potential Competing Interest. Kohey Kitao is CEO of Noster Inc., which provides microbiome-associated lipid metabolite reference standards and analytical protocols used in this study. Co-authors (Adarsh Sandhu, Chiaki Tomimoto, Kowa Tsuji and Yasunori Yonejima) are employees of Noster Inc. and contributed to the development of analytical reference standards and LC-MS/MS quantification protocols for microbiome-associated lipid metabolites used in this study. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Supplementary Files FinalOnlineSupplement.pdf Online Supplement Cite Share Download PDF Status: Under Review Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-9013531","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Resource","associatedPublications":[],"authors":[{"id":603887447,"identity":"a75f9f18-1338-4507-9e1a-0a0d16977210","order_by":0,"name":"J. Mark Brown","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAArElEQVRIiWNgGAWjYBACAwj1T46BgfEBSVoOGDMwMBuQpiWxgWgt5tKHj0kX5txJ728/zMDwcU8tYS2WfWlp0jO3PcudcSaZgXHGs+NEOOwMj9lt3m3MuRsk+A8w8xw4RryWdAMJZgaStBxOgGqpIcIvPWzpv3m3pRmC/HJwxoEDhLWY8zAfNubdZiPP336Y8cGHA3WEtaAAoBWHSdQCBKTaMgpGwSgYBSMBAAAkvzgbBkZbAwAAAABJRU5ErkJggg==","orcid":"https://orcid.org/0000-0003-2708-7487","institution":"Cleveland Clinic","correspondingAuthor":true,"prefix":"","firstName":"J.","middleName":"Mark","lastName":"Brown","suffix":""},{"id":603887448,"identity":"e54a1dc4-ffe7-4bfa-a74b-a4cb1b9ca242","order_by":1,"name":"Nour Mouannes","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Nour","middleName":"","lastName":"Mouannes","suffix":""},{"id":603887449,"identity":"53c08b02-9682-4845-ade0-8a7bd3cd99fd","order_by":2,"name":"Amy Burrows","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Amy","middleName":"","lastName":"Burrows","suffix":""},{"id":603887450,"identity":"3101421a-3657-4069-a052-dacfba6971c7","order_by":3,"name":"Anthony Horak","email":"","orcid":"","institution":"Department of Cancer Biology, Lerner Research Institute","correspondingAuthor":false,"prefix":"","firstName":"Anthony","middleName":"","lastName":"Horak","suffix":""},{"id":603887451,"identity":"d9472c42-90a8-4e96-932c-897da803f053","order_by":4,"name":"Venkateshwari Varadharajan","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Venkateshwari","middleName":"","lastName":"Varadharajan","suffix":""},{"id":603887452,"identity":"9ed92b6f-eff0-49bc-82ed-40e45c2ad11a","order_by":5,"name":"Sumita Dutta","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Sumita","middleName":"","lastName":"Dutta","suffix":""},{"id":603887453,"identity":"48644cfa-4ceb-4686-96e7-7efc3a8e6ff0","order_by":6,"name":"Kala Mahen","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Kala","middleName":"","lastName":"Mahen","suffix":""},{"id":603887454,"identity":"2a8db218-4e37-4382-b145-6911c148119e","order_by":7,"name":"Rakhee Banerjee","email":"","orcid":"","institution":"Department of Cancer Biology, Lerner Research Institute","correspondingAuthor":false,"prefix":"","firstName":"Rakhee","middleName":"","lastName":"Banerjee","suffix":""},{"id":603887455,"identity":"b35afd54-d5fd-4c17-91a6-2d202918dc8a","order_by":8,"name":"William Massey","email":"","orcid":"https://orcid.org/0000-0002-2087-6048","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"William","middleName":"","lastName":"Massey","suffix":""},{"id":603887456,"identity":"68b48836-86f6-4586-9007-97e7b98ebcca","order_by":9,"name":"Xiayan Ye","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Xiayan","middleName":"","lastName":"Ye","suffix":""},{"id":603887457,"identity":"9c3c146c-2dcf-44d4-93cd-170aa065c88c","order_by":10,"name":"Marko Mrdjen","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Marko","middleName":"","lastName":"Mrdjen","suffix":""},{"id":603887458,"identity":"8bd6d9ec-d00a-402d-b391-a58e3c86aafe","order_by":11,"name":"Amanda Brown","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Amanda","middleName":"","lastName":"Brown","suffix":""},{"id":603887459,"identity":"9c0e2d59-2b37-463d-bfed-501753fcfe2e","order_by":12,"name":"Olumuyiwa Awoniwi","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Olumuyiwa","middleName":"","lastName":"Awoniwi","suffix":""},{"id":603887460,"identity":"c6c5c25c-d979-4bb4-9f21-132416d9243e","order_by":13,"name":"Kohey Kitao","email":"","orcid":"","institution":"Noster Inc.","correspondingAuthor":false,"prefix":"","firstName":"Kohey","middleName":"","lastName":"Kitao","suffix":""},{"id":603887461,"identity":"7737af90-b5b3-4d7f-9438-cc0d2d913fea","order_by":14,"name":"Adarsh Sandhu","email":"","orcid":"","institution":"Noster Inc.","correspondingAuthor":false,"prefix":"","firstName":"Adarsh","middleName":"","lastName":"Sandhu","suffix":""},{"id":603887462,"identity":"fe8cde4b-35ea-4cf0-9412-2126e8173b94","order_by":15,"name":"Chiaki Tomimoto","email":"","orcid":"","institution":"Noster Inc.","correspondingAuthor":false,"prefix":"","firstName":"Chiaki","middleName":"","lastName":"Tomimoto","suffix":""},{"id":603887463,"identity":"701d7fa6-e477-4773-be59-d5bf710e36d0","order_by":16,"name":"Kowa Tsuji","email":"","orcid":"","institution":"Noster Inc.","correspondingAuthor":false,"prefix":"","firstName":"Kowa","middleName":"","lastName":"Tsuji","suffix":""},{"id":603887464,"identity":"a69120e3-a6e0-48eb-a721-14c19da2e26c","order_by":17,"name":"Yasunori Yonejima","email":"","orcid":"","institution":"Noster Inc.","correspondingAuthor":false,"prefix":"","firstName":"Yasunori","middleName":"","lastName":"Yonejima","suffix":""},{"id":603887465,"identity":"265ad9ff-b5ac-408b-a7b6-1f49e6e87f69","order_by":18,"name":"Isaac Ampong","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Isaac","middleName":"","lastName":"Ampong","suffix":""},{"id":603887466,"identity":"aa8c6265-65c4-4d02-9e9e-0715af52dc91","order_by":19,"name":"Renliang Zhang","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Renliang","middleName":"","lastName":"Zhang","suffix":""},{"id":603887467,"identity":"ebf48f32-1554-4369-b11e-ae1e7242ad89","order_by":20,"name":"Yunguang Qiu","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Yunguang","middleName":"","lastName":"Qiu","suffix":""},{"id":603887468,"identity":"039a0683-8407-4828-9f19-7b20dd549a1f","order_by":21,"name":"Belinda Willard","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Belinda","middleName":"","lastName":"Willard","suffix":""},{"id":603887469,"identity":"e5a6261c-912b-412f-b545-46de4ec4527d","order_by":22,"name":"Adeline Hajjar","email":"","orcid":"https://orcid.org/0000-0002-4838-8070","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Adeline","middleName":"","lastName":"Hajjar","suffix":""},{"id":603887470,"identity":"767247ea-ff4b-49f6-99cf-7c60286f64e8","order_by":23,"name":"Mohammed Dwidar","email":"","orcid":"https://orcid.org/0000-0003-1366-0393","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Mohammed","middleName":"","lastName":"Dwidar","suffix":""},{"id":603887471,"identity":"c815a5da-b0eb-4897-ac56-8ce464df713d","order_by":24,"name":"Naseer Sangwan","email":"","orcid":"","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Naseer","middleName":"","lastName":"Sangwan","suffix":""},{"id":603887472,"identity":"71a7ac87-2ba3-41c1-a543-9cd90f582d7b","order_by":25,"name":"Mary Walker","email":"","orcid":"","institution":"Harvard University","correspondingAuthor":false,"prefix":"","firstName":"Mary","middleName":"","lastName":"Walker","suffix":""},{"id":603887473,"identity":"e174198f-44f9-4222-9686-2e99f18ece03","order_by":26,"name":"Matthew Spite","email":"","orcid":"","institution":"Harvard University","correspondingAuthor":false,"prefix":"","firstName":"Matthew","middleName":"","lastName":"Spite","suffix":""},{"id":603887474,"identity":"c08399fc-9941-4065-9597-20223edf0bd0","order_by":27,"name":"Feixiong Cheng","email":"","orcid":"https://orcid.org/0000-0002-1736-2847","institution":"Cleveland Clinic","correspondingAuthor":false,"prefix":"","firstName":"Feixiong","middleName":"","lastName":"Cheng","suffix":""}],"badges":[],"createdAt":"2026-03-02 20:20:46","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-9013531/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-9013531/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":104490461,"identity":"ed755d55-b66b-4dce-9a13-9688d1c94df4","added_by":"auto","created_at":"2026-03-12 11:27:12","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":2495875,"visible":true,"origin":"","legend":"Article File","description":"","filename":"FinalMainTextforNatureMicrobiology.pdf","url":"https://assets-eu.researchsquare.com/files/rs-9013531/v1_covered_c37e3896-c660-46a0-83b5-627decc8fe39.pdf"},{"id":104490283,"identity":"ef9f8786-8b30-474e-96a5-20eb513a0c69","added_by":"auto","created_at":"2026-03-12 11:26:16","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"supplement","size":8445651,"visible":true,"origin":"","legend":"Online Supplement","description":"","filename":"FinalOnlineSupplement.pdf","url":"https://assets-eu.researchsquare.com/files/rs-9013531/v1/38ab12ce4af482e2e883c0ea.pdf"}],"financialInterests":"\u003cb\u003eYes\u003c/b\u003e there is potential Competing Interest.\nKohey Kitao is CEO of Noster Inc., which provides microbiome-associated lipid metabolite reference standards and analytical protocols used in this study. Co-authors (Adarsh Sandhu, Chiaki Tomimoto, Kowa Tsuji and Yasunori Yonejima) are employees of Noster Inc. and contributed to the development of analytical reference standards and LC-MS/MS quantification protocols for microbiome-associated lipid metabolites used in this study. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.","formattedTitle":"Multi-Omic Analyses of Dietary Fatty Acid-Microbe-Host Interactions Reveal Metaorganismal Lipid Metabolic Crosstalk Impacting Cardiometabolic Disease","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"Nutrition, Microbiome, Metabolism, Lipid, Metabolomics","lastPublishedDoi":"10.21203/rs.3.rs-9013531/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-9013531/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Following a meal, our gut microbiome and human cells collaborate via metaorganismal metabolic circuits to produce diverse nutrient metabolites that systemically circulate to influence health and disease. Although there are now several examples of bacterial fiber-, amino acid-, and micronutrient-derived metabolites impacting cardiometabolic disease, very little is known in regards to how diet-microbe-host interactions impact lipid homeostasis. Here we address this by defining dietary fatty acid substrate availability in germ-free versus conventionally-raised mice coupled to deep multi-omic metabolic phenotyping. Our data demonstrate that the effects of dietary saturated (SFA), monounsaturated (MUFA), and polyunsaturated fatty acids (PUFA) on the host lipidome, transcriptome, proteome and metabolome are uniquely impacted by resident microbiota. Also, the hepatic levels of both pro-inflammatory and pro-resolving lipid mediators are strongly influenced by dietary fatty acid-microbe interactions. This study presents a unique resource to the nutrition and metabolism research community to advance our understanding of metaorganismal lipid metabolism.","manuscriptTitle":"Multi-Omic Analyses of Dietary Fatty Acid-Microbe-Host Interactions Reveal Metaorganismal Lipid Metabolic Crosstalk Impacting Cardiometabolic Disease","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2026-03-12 11:23:50","doi":"10.21203/rs.3.rs-9013531/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"nature-microbiology","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"nmicrobiol","sideBox":"Learn more about [Nature Microbiology](http://www.nature.com/nmicrobiol/)","snPcode":"","submissionUrl":"","title":"Nature Microbiology","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Nature Research","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"e62909e6-9bae-4ac4-9a1c-2b2ed2054375","owner":[],"postedDate":"March 12th, 2026","published":true,"recentEditorialEvents":[{"type":"editorInvitedReview","content":"This content is not available.","date":"2026-05-05T22:30:09+00:00","index":3,"fulltext":"This content is not available."}],"rejectedJournal":[],"revision":"","amendment":"","status":"under-review","subjectAreas":[{"id":64261184,"name":"Health sciences/Endocrinology/Endocrine system and metabolic diseases/Metabolic syndrome"},{"id":64261185,"name":"Biological sciences/Biochemistry/Lipids/Membrane lipids"}],"tags":[],"updatedAt":"2026-03-12T11:23:50+00:00","versionOfRecord":[],"versionCreatedAt":"2026-03-12 11:23:50","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-9013531","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-9013531","identity":"rs-9013531","version":["v1"]},"buildId":"XKTyCvWXoU3ODBz1xrDgd","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2026) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00