Identification of plasma exosomal lncRNA as a biomarker for early diagnosis of gastric cancer

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This study identified two plasma exosomal lncRNAs, lncmstrg.2441832.8 and lncmstrg.2312697, as potential biomarkers for early gastric cancer diagnosis with higher accuracy than traditional markers.

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This preprint studied plasma exosomal long noncoding RNAs as potential biomarkers for early diagnosis of gastric cancer, using plasma from 93 early-stage gastric cancer patients and 49 normal controls. Exosomes were isolated from plasma, characterized by electron microscopy, nanoparticle tracking analysis, and Western blot, then exosomal lncRNAs were profiled by RNA-Seq (in a subset of 5 vs 5) and validated by RT-qPCR in the full cohort. The authors reported 76 lncRNAs upregulated and 260 downregulated in early gastric cancer exosomes, with six lncRNAs showing significant differential expression by RT-qPCR; among them, lncmstrg.2441832.8 and lncmstrg.2312697 had AUCs of 0.6211 and 0.631, and combining the two increased AUC to 0.73, which the authors compared to traditional markers CEA, AFP, and CA199. A key caveat explicitly stated is that the work is a preprint and not peer reviewed. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

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Abstract

Background: , there were about 1,090,000 gastric cancer(GC) cases in 2020 in China. The incidence and mortality rates ranked the fifth and third among all kinds of cancers in China. Early diagnosis plays an important role in the treatment and prognosis of gastric cancer. In recent years, noninvasive diagnosis, especially plasma exosome lncRNAs, has become a promissing biomarkers with high specificity and sensitivity for early diagnosis of cancers. Methods: , in this study, the exosomes in the plasma of patients with early gastric cancer were isolated by a commercial kit. After identified by electron microscopy observation, particle size analysis and western-blot verification, the lncRNAs in the exosomes were extracted. The lncRNAs differentially expressed in the plasma exosomes of patients with gastric cancer were analysized by high-throughput RNA sequencing(RNA-Seq). The differentially expressed lncRNAs were verified by RT-qPCR in 93 patients with early gastric cancer and 49 normal controls. Results: , Electron microscopy, particle size analysis and western blot showed that exosomes were successfully isolated from plasma. RNA-Seq results show that 76 lncRNAs were up-regulated and 260 lncRNAs were down regulated in plasma exosomes of early gastric cancer patients compared with normal controls. RT-qPCR analysis indicated that a total of 6 lncRNAs were significantly and differentially expressed in gastric cancer patients compared to normal controls, with 2 (lncmstrg. 1319590,Lncmstrg. 2312697) highly expressed and 4 lowly expressed (lncmstr-g.1004024.1, lncmstrg. 2441832.8, lncmstrg. 315376.1, lncmstrg. 907985.2,)( p  < 0.05). The survival curve analysis indicated that lncmstrg.2441832.8 and lncmstrg.2312697 had higher sensitivity and specificity for the diagnosis of gastric cancer, respectively and AUC curve areas were 0.6211 and 0.631, p  < 0.05, respectively, which were greater than the traditional clinical detection indexes CEA (0.61) and AFP (0.57). When combined lncmstrg.2441832.8 and lncmstrg.2312697 in gastric cancer diagnosis, AUC curve area reached 0.73, which was greater than CA199 (0.71). Conclusion: , lncmstrg.2441832.8 and lncmstrg.2312697 may be a potential and promissing biomarkers for early diagnosis of gastric cancer.
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Identification of plasma exosomal lncRNA as a biomarker for early diagnosis of gastric cancer | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Research Article Identification of plasma exosomal lncRNA as a biomarker for early diagnosis of gastric cancer ye wei, Xuming Hu, Shuai Yuan, Yue Zhao, Chunhui Zhu, Mingzhou Guo, and 1 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-4156888/v1 This work is licensed under a CC BY 4.0 License Status: Posted Version 1 posted You are reading this latest preprint version Abstract Background, there were about 1,090,000 gastric cancer(GC) cases in 2020 in China. The incidence and mortality rates ranked the fifth and third among all kinds of cancers in China. Early diagnosis plays an important role in the treatment and prognosis of gastric cancer. In recent years, noninvasive diagnosis, especially plasma exosome lncRNAs, has become a promissing biomarkers with high specificity and sensitivity for early diagnosis of cancers. Methods , in this study, the exosomes in the plasma of patients with early gastric cancer were isolated by a commercial kit. After identified by electron microscopy observation, particle size analysis and western-blot verification, the lncRNAs in the exosomes were extracted. The lncRNAs differentially expressed in the plasma exosomes of patients with gastric cancer were analysized by high-throughput RNA sequencing(RNA-Seq). The differentially expressed lncRNAs were verified by RT-qPCR in 93 patients with early gastric cancer and 49 normal controls. Results , Electron microscopy, particle size analysis and western blot showed that exosomes were successfully isolated from plasma. RNA-Seq results show that 76 lncRNAs were up-regulated and 260 lncRNAs were down regulated in plasma exosomes of early gastric cancer patients compared with normal controls. RT-qPCR analysis indicated that a total of 6 lncRNAs were significantly and differentially expressed in gastric cancer patients compared to normal controls, with 2 (lncmstrg. 1319590,Lncmstrg. 2312697) highly expressed and 4 lowly expressed (lncmstr-g.1004024.1, lncmstrg. 2441832.8, lncmstrg. 315376.1, lncmstrg. 907985.2,)( p < 0.05). The survival curve analysis indicated that lncmstrg.2441832.8 and lncmstrg.2312697 had higher sensitivity and specificity for the diagnosis of gastric cancer, respectively and AUC curve areas were 0.6211 and 0.631, p < 0.05, respectively, which were greater than the traditional clinical detection indexes CEA (0.61) and AFP (0.57). When combined lncmstrg.2441832.8 and lncmstrg.2312697 in gastric cancer diagnosis, AUC curve area reached 0.73, which was greater than CA199 (0.71). Conclusion , lncmstrg.2441832.8 and lncmstrg.2312697 may be a potential and promissing biomarkers for early diagnosis of gastric cancer. gastric cancer exosome lncRNA diagnosis biomarker Figures Figure 1 Figure 2 Figure 3 Figure 4 Introduction Cancer is the second leading cause of human death in the world, and the number of deaths and morbidity are increasing year by year. Gastric cancer is one of the most important cancers that harm human health. According to 2020 cancer burden data released by IARC, the world's newest gastric cancer cases are 1 million and 90 thousand cases and 770 thousand deaths in 2020. Incidence rate and mortality rate are the fifth and fourth of all kinds of tumors. China had 480 thousand new cases and 370 thousand deaths of gastric cancers and the incidence rate and mortality rate are the third of all kinds of tumors in the world[ 1 ]. At present, the specificity and sensitivity of commonly used tumor diagnosis markers such as CA199 and CEA are quietly low. Although gastroscopy is a gold standard for the diagnosis of gastric cancer, many people unwell to do it because gastroscopy is an invasive examination. Additionally, the early symptoms of gastric cancer are hidden and difficult to detect. Therefore, these result in a low rate of early diagnosis of gastric cancer. Exosome is an important subgroup of extracellular vesicles [ 2 ], which are usually considered as membranous vesicular bodies with a diameter of 30 ~ 150 nm released to outside the cell through the fusion of multivesicles and cell membrane [ 3 ]. It was found that exosomes exist in a variety of human fluids, such as serum (plasma), saliva, urine, amniotic fluid, milk, etc. [ 4 ]. Exosomes contain abundant bioactive molecules, such as protein, mRNA, lncRNA and lipids, which participate in a variety of biological processes in vivo , such as intercellular material transport and signal transmission, angiogenesis, histone modification, immune activation / inhibition, cell growth and apoptosis. A large number of studies have shown that exosomes are closely related to the occurrence, growth, invasion, metastasis and metabolism of a variety of tumors. lncRNAs are RNA molecules that do not encode or rarely encode proteins between 200 nt-100 kb in length [ 5 – 7 ]. lncRNAs play a key role in the regulation of chromatin dynamics, gene expression, cell growth and differentiation [ 17 ]. lncRNAs participate in a variety of cellular or biological processes by interacting with various biological macromolecules such as DNA, proteins and RNAs (including mRNAs, microRNAs and other lncRNAs) [ 8 – 12 ]. lncRNAs have been identified to be involved in many complex cellular processes, such as cell death, growth, differentiation, apoptosis, epigenetic regulation, genomic imprinting, splicing, post transcriptional gene expression regulation, chromatin modification, inflammation, etc. [ 13 – 21 ]. Recent studies have shown that some lncRNAs are highly expressed in various human cancers and play an important role in tumorigenesis, apoptosis, invasion and metastasis [ 22 – 24 ]. In view of the high stability of exosome lncRNAs in body fluids, exosomal lncRNAs have a wide application potentiality in early cancer diagnosis. Patients and Methods Patients Ninety three plasma samples were collected from the patients with early gastric cancer in the Beijing 301 Hospital from 2018 to 2019 and 49 normal control plasma samples were obtained from the Jiangsu Oilfield General Hospital. All gastric cancer patients should be: (1) cancers by pathological diagnosis belong to early stage; (2) none received any cancer treatment. The following patients were excluded: (1) patients who were suffering from other cancers at the same time; (2) patients who were suffering from functional damage to their heart, liver and kidney. Clinical information was available for all gastric cancer patients and normal controls involved in the study. The study was approved by the Beijing 301 Hospital ethics committee, and all subjects signed the informed consent form. The plasma was isolated by centrifuged at 2000g for 10 minutes within two hours after obtaining the blood samples. The separated plasma was stored in a refrigerator at − 80℃. Isolation of exosomes 1.5 ml plasma samples were first passed through a 0.8 µm diameter filter membrane (Millipore). Then, exosomes and exosomal RNA were isolateted according to the procedure of exorneasy MIDI Kit (Qiagen). The obtained exosomes were resuspended with 40µl PBS and stored in -80 ℃ refrigerator for further analysis. Identification of exosomes NTA analysis The concentration and particle size of exosomes were analyzed by Nanoparticle Tracking Analysis(NTA)with ZetaView(Particle Metrix,German ). Transmission Electron Microscopy(TEM) analysis First the copper mesh containing 10µl freshly isolated exosome samples were placed on the filter paper. After sucking the excess samples with the filter paper, the samples were dried in the air for 5 minutes. Then 1% uranyl acetate and negative dye were added on samples and standed for 2 minutes. After sucking the excess dye and drying in the air for 40 minutes, the samples were observed under transmission electron microscope( G2 F30 S-TWIN, FEI). Western Blot Exosomes were lysed in standard RIPA buffer supplemented with protease and phosphatase inhibitor cocktails (Roche). The amount of proteins was measured with a BCA protein assay kit (Beyotime, China). The protein was solubilized with loading buffer (5×) and heated at 100°C for 10 min. Proteins were separated by SDS-PAGE and then transferred to a 0.2-µm PVDF membrane (BioRad, USA). After blocking with Odyssey Blocking Buffer (Li-COR Biosciences, USA), the membrane was incubated with primary antibody (1:1000, rabit anti-CD9, CD63 )at 4°C overnight, then incubated with secondary antibodies (1:5000, Goat anti-rabbit IgG). High throughput sequencing of exosomal RNAs Plasma exosomal RNAs from 5 patients with early gastric cancer and 5 normal controls were used for high-throughput RNA sequencing. Exosomal RNAs were extracted using exorneasy MIDI Kit (Qiagen) and quantified with Nanodrop. The quality of RNA was assessed by capillary electrophoresis on an Agilent 2100 Bioanalyzer (Agilent Technologies, CA). High throughput RNA sequencing was completed by Baimike company (Beijing) and RNA sequencing was done using Illumina hiseq platform. Real-time quantitative PCR Purified RNA was reversely transcribed into cDNA using the Hiscript Q RT SuperMix. Then, qRT-PCR was performed using SYBR Green assays (Vazyme) on a BIO-RAD CFX Connect system. The reactions were incubated at 95°C for 10 min, followed by 45 cycles of 95°C for 5 seconds and 60°C for 30 seconds. All experiments were conducted in triplicate, and the products were confirmed by melting curve analysis following each reaction. The level of each candidate lncRNA was normalized to that of GAPDH. The primers used for PCR are as followings: lncMSTRG.1319590: (forward) 5′-AGAGTCTCGTTCGTTATCG-3′ and (reverse) 5′-CGGACAGGATTGACAGATT-3′; lncMSTRG.2312697: (forward) 5′-TCCATCCATCCATCATCTATC-3′ and (reverse) 5′-ATGCTGGATGAATGGAGAAT-3′; lncENSG00000095932 : (forward) 5′-TCCATCCATCCATCATCCA-3′ and (reverse) 5′-AGTGGGTGAATGGGTGAG-3′; lncENSG00000182162: (forward) 5′-ATGAATGAGTGAGTGAATGG-3′ and (reverse) 5′-CATCCATCCATCCATCCAT-3′.; lncENSG0000014881: (forward) 5′-CACTTACACCCACCCTTAC-3′ and (reverse) 5′-GGCGTGGAGGTAGATGTA-3′; lncENSG00000214226: (forward) 5′-CACCATCAGCACCATCAC-3′ and (reverse) 5′-TTGTGGTGGTGGTAATAGTG-3′; GAPDH: (forward) 5′-CCGGGAAACTGTGGCGTGATGG-3′ and (reverse) 5′-AGGTGGAGGAGTGGGTGTCGCTGTT-3′. The relative expression levels of the lncRNAs were calculated using the 2 − ΔΔCT method. Statistical analysis All statistical analyses were performed with SPSS 22.0 and GraphPad Prism 8.0 Software. The difference of the expression levels of plasma exosomal lncRNAs between GC patients and normal controls were evaluated by a Student’s t -test or one-way ANOVA. Receiver operating characteristic curve (ROC) and area under curve (AUC) were used to estimate the diagnostic value of each index for GC. A combined ROC was calculated on the basis of the logistic regression model. P < 0.05 was regarded as statistically significant. Results Characteristics of plasma exosomes We successfully extracted relatively pure plasma exosomes through the kit, and identified the isolated exosomes by transmission electron microscope, particle size analysis and Western blot.Exosomes with typical "cup cap" morphology can be directly observed by projection electron microscope (see Fig. 1 a).The particle size analysis shows that the average diameter of exosomes is 128.8 nm, which is in line with the diameter range of exosomes obtained in various current studies (Fig. 1 b).Western blot showed that both marker proteins CD9 and CD63 were expressed in exosomes (see Fig. 1 c), which was consistent with the characteristics of exosomes. The above results show that we have successfully extracted exosomes from plasma. Screening of differentially expressed exosomal lncRNAs in early gastric cancer by high throughput RNA sequencing assay We extracted plasma exosomal RNA from 5 patients with early gastric cancer and 5 normal controls for high-throughput RNA sequencing assay. The sequencing results showed that 76 lncRNAs were up-regulated and 260 lncRNAs were down-regulated compared with the normal controls (fold change ≥ 1.5, P < 0.05). The difference of lncRNA expression levels between gastric cancer group and control group can be seen by volcano map and heat map (Fig. 2 ). Seven lncRNAs with the largest expression difference were selected for the further verification. Verification of selected differentially expressed exosomal lncRNAs in plasma samples of gastric cancer patients To verify the differential expression of exosomal lncRNAs in early gastric cancer patients, plasma exosomes and RNA were isolated from 93 patients with early gastric cancer and 49 normal controls. Seven lncRNAs with the largest differential expression were selected from 336 differential expression lncRNAs. These lncRNAs were further confirmed by RT-qPCR (Fig. 3 A-F).The results indicated that 6 lncRNAs showed significant differences in the expression levels between the gastric cancer group and the control group ( P < 0.05), of which 2 lncRNAs (lncmstrg1319590 and lncmstrg2312697) were highly expressed and 4 were lowly expressed in the plasma exosomes of gastric cancer patients (lncmstrg 1004024.1, lncmstrg2441832.8, lncmstrg315376.1, lncmstrg907985.2). The verification of differentially expressed exosomal lncRNAs in clinical samples Based on the six differentially expressed lncRNAs in the plasma exosomes of early gastric cancer patients with the largest difference, we used the receiver operating characteristic curve (ROC) to calculate the specificity and sensitivity of the differentially expressed lncRNAs for the early diagnosis of gastric cancer and decided whether they would have diagnostic advantage compared with the traditional tumor markers like CEA, CA199 and AFP. ROC results indicated that lncmstrg.2441832.8 and lncmstrg.2312697 had higher sensitivity and specificity for the diagnosis of gastric cancer, respectively. The Area Under Curves (AUCs) were 0.6211 and 0.631 ( P < 0.05), while AUCs of CEA and AFP were 0.61 and 0.57, respectively. When we combined lncmstrg.2441832.8 with lncmstrg.2312697 to diagnose early gastric cancer, the AUCreached 0.73, was greater than 0.71 of CA199 (Fig. 4 A-B). These results indicate that lncmstrg.2441832.8 and lncmstrg.2312697 may be used as potential biomarkers for early diagnosis of gastric cancer. DISCUSSION Gastric cancer is one of the common malignant tumors endangering human health. Because the current commonly used tumor markers can not accurately diagnose gastric cancer, especially early gastric cancer, gastric cancer is usually found in the middle and late stage, which seriously affects the treatment and prognosis of patients. The five-year survival rate is usually only 10–30%[ 25–26] The rise and development of liquid biopsy technology provides a technical means for early detection of tumor specific markers in patients' blood. Its noninvasive, sensitivity and accuracy bring new hope for early tumor diagnosis. After early detection and standardized treatment, the five-year survival rate of gastric cancer can reach more than 90%.Exosome detection is an important part of liquid biopsy technology. Exosomes are vesicle like bodies actively secreted by a variety of living cells. There are a variety of bioactive substances in exosomes, including DNA, protein, mRNA, miRNA, lnRNA, etc. Exosomes are representative of source cells and can carry specific biological macromolecules of source cells, including tumor cells, such as protein, lncRNA etc . It can reflect the pathophysiological state of tumor patients and the nature of primary tumors, and is expected to be used in the clinical diagnosis of malignant tumors [ 27 ]. Exosome encapsulated lncRNA has good stability in blood and is usually considered as a biomarker for early diagnosis of gastric cancer. Studies have shown that the high expression of hottip in serum exosomes is positively correlated with tumor size, pathological stage, metastasis and prognosis of patients with gastric cancer. Hottip can mediate cell proliferation by inhibiting p21 or leading to miRNA silencing. The expression of hottip in plasma exosomes of patients with gastric cancer was increased significantly, and the area under AUC curve was 0.827, which was significantly higher than clinical biomarkers such as CEA and CA199 [ 28 ].Through sequencing analysis of plasma exosomal RNA, it was found that plasma exosomal lnceegc1 was significantly up-regulated in patients with early gastric cancer, and the product under the subject curve was 0.84, which was much higher than conventional markers such as CEA [ 29 ]. In addition, linc00152, zfas1, ufc1 and hotair in plasma (serum) exosomes have also been proved to be potential biomarkers for early diagnosis of gastric cancer. In this study, 336 differentially expressed lncRNAs were obtained by high-throughput sequencing analysis of RNA in exosomes of early gastric cancer and normal control, of which 76 were up-regulated and 269 were down regulated in gastric cancer samples.We selected 7 lncRNAs with the largest differential expression changes were selected for further verification, and further obtained 6 differentially expressed lncRNAs, including 2 with higher expression and 4 with lower expression were obtained.Through ROC analysis, we infered that lncmstrg.2441832.8 was finally obtained, and lncmstrg.2312697 can be used as lncRNA biomarkers for early diagnosis biomarkers of gastric cancer. To our knowledge, at present, as far as we know, the above two potential lncRNA biomarkers have not been reported so farfound by other studies, and their biological functions and target genes need to be further studied. Additionally, The number of gastric cancer and controls included in this study is not enough. We need to increase the sample size to deeply analyze the diagnostic specificity and sensitivity of lncmstrg.2441832.8 and lncmstrg.2312697. In conclusion, we obtained the differentially expressed lncRNAs in plasma exosomes of early gastric cancer patients through high-throughput sequencing., and verified them in large-scale samples. Finally, We further obtained identify two exosomal lncRNA biomarkers that may are expected to be used as potential biomarkers for early diagnosis of gastric cancer. Declarations Ethics approval and consent to participate Ethic of experiment was approved by Yangzhou University . The reference number is 2021BW071. Consent for publication Not applicable. Availability of data and materials The data underlying this article will be shared on reasonable request to the corresponding author. Funding This study was supported by the national key R&D Program "Research on multidimensional molecular typing and diagnostic molecular markers of gastrointestinal cancer" (2016YFC1303604). Competing interest The authors declare no competing interests. Author’s Contribution Ye wei and xuming hu wrote the main manuscript ,All authors reviewed the manuscript. Consent for publication Not applicable. References Latest global cancer data: Cancer burden rises to 19.3 million new cases and 10.0 million cancer deaths in 2020. WHO. .Hill AF.Exosomes and microvesicles: methods and protocols[M].Switzerland AG: Springer Nature,2017. .Cui S,Cheng Z,Qin W,et al.Exosomes as a liquid biopsy for lung cancer[J].Lung cancer,2018,116: 46-54. Vlassov AV, Magdaleno S,Setterquist R,et al. Exosomes: current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials[J]. Biochimica Biophysic Acta, 2012,1820(7):940-948. 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Cancer Manag Res 10:239–248. https://doi.org/10.2147/CMAR.S149619 Jeddi F, Soozangar N, Sadeghi MR et al (2018) Nrf2 overexpression is associated with P-glycoprotein upregulation in gastric cancer. Biomed Pharmacother 97:286–292. Clayton A,Mason MD. Exosomes in tumour immunity [J]. Curr Oncol,2009,16(3):46-49 Zhao R, Zhang Y, Zhang X et al (2018) Exosomal long noncoding RNA HOTTIP as potential novel diagnostic and prognostic biomarker test for gastric cancer. Mol Cancer 17:68. Hao Xu1 , Jie Zhou,Jin Tang et al (2020) Tumor-originated exosomal lncUEGC1 as a circulating biomarker for early-stage gastric cancer.JouRNAl of Clinical Laboratory Analysis.2020;00:e23323 Additional Declarations No competing interests reported. Cite Share Download PDF Status: Posted Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. 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18:42:28","extension":"png","order_by":2,"title":"Figure 2","display":"","copyAsset":false,"role":"figure","size":320522,"visible":true,"origin":"","legend":"\u003cp\u003eSee image above for figure legend\u003c/p\u003e","description":"","filename":"2.png","url":"https://assets-eu.researchsquare.com/files/rs-4156888/v1/bd70e5ae4698e2bddbd834b4.png"},{"id":53750911,"identity":"630f1fb8-ab88-4efe-8861-e885a9db18ab","added_by":"auto","created_at":"2024-03-29 18:42:28","extension":"png","order_by":3,"title":"Figure 3","display":"","copyAsset":false,"role":"figure","size":376792,"visible":true,"origin":"","legend":"\u003cp\u003eSee image above for figure legend\u003c/p\u003e","description":"","filename":"3.png","url":"https://assets-eu.researchsquare.com/files/rs-4156888/v1/95f625fce5aae5372fee922c.png"},{"id":53750912,"identity":"7a16c4dd-cec0-4ec9-91ea-8a8147850c30","added_by":"auto","created_at":"2024-03-29 18:42:28","extension":"png","order_by":4,"title":"Figure 4","display":"","copyAsset":false,"role":"figure","size":376792,"visible":true,"origin":"","legend":"\u003cp\u003eSee image above for figure legend\u003c/p\u003e","description":"","filename":"4.png","url":"https://assets-eu.researchsquare.com/files/rs-4156888/v1/695a734a6748a03cbb42c25a.png"},{"id":53754708,"identity":"b27736e4-9dd7-4b4e-8612-11d88047255e","added_by":"auto","created_at":"2024-03-29 18:58:31","extension":"pdf","order_by":0,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":1003710,"visible":true,"origin":"","legend":"","description":"","filename":"manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-4156888/v1/116b603c-09c8-4069-affd-dd6a987503cd.pdf"}],"financialInterests":"No competing interests reported.","formattedTitle":"Identification of plasma exosomal lncRNA as a biomarker for early diagnosis of gastric cancer","fulltext":[{"header":"Introduction","content":"\u003cp\u003eCancer is the second leading cause of human death in the world, and the number of deaths and morbidity are increasing year by year. Gastric cancer is one of the most important cancers that harm human health. According to 2020 cancer burden data released by IARC, the world's newest gastric cancer cases are 1\u0026nbsp;million and 90 thousand cases and 770 thousand deaths in 2020. Incidence rate and mortality rate are the fifth and fourth of all kinds of tumors. China had 480 thousand new cases and 370 thousand deaths of gastric cancers and the incidence rate and mortality rate are the third of all kinds of tumors in the world[\u003cspan citationid=\"CR1\" class=\"CitationRef\"\u003e1\u003c/span\u003e]. At present, the specificity and sensitivity of commonly used tumor diagnosis markers such as CA199 and CEA are quietly low. Although gastroscopy is a gold standard for the diagnosis of gastric cancer, many people unwell to do it because gastroscopy is an invasive examination. Additionally, the early symptoms of gastric cancer are hidden and difficult to detect. Therefore, these result in a low rate of early diagnosis of gastric cancer.\u003c/p\u003e \u003cp\u003eExosome is an important subgroup of extracellular vesicles [\u003cspan citationid=\"CR2\" class=\"CitationRef\"\u003e2\u003c/span\u003e], which are usually considered as membranous vesicular bodies with a diameter of 30\u0026thinsp;~\u0026thinsp;150 nm released to outside the cell through the fusion of multivesicles and cell membrane [\u003cspan citationid=\"CR3\" class=\"CitationRef\"\u003e3\u003c/span\u003e]. It was found that exosomes exist in a variety of human fluids, such as serum (plasma), saliva, urine, amniotic fluid, milk, etc. [\u003cspan citationid=\"CR4\" class=\"CitationRef\"\u003e4\u003c/span\u003e].\u003c/p\u003e \u003cp\u003eExosomes contain abundant bioactive molecules, such as protein, mRNA, lncRNA and lipids, which participate in a variety of biological processes \u003cem\u003ein vivo\u003c/em\u003e, such as intercellular material transport and signal transmission, angiogenesis, histone modification, immune activation / inhibition, cell growth and apoptosis. A large number of studies have shown that exosomes are closely related to the occurrence, growth, invasion, metastasis and metabolism of a variety of tumors.\u003c/p\u003e \u003cp\u003elncRNAs are RNA molecules that do not encode or rarely encode proteins between 200 nt-100 kb in length [\u003cspan additionalcitationids=\"CR6\" citationid=\"CR5\" class=\"CitationRef\"\u003e5\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR7\" class=\"CitationRef\"\u003e7\u003c/span\u003e]. lncRNAs play a key role in the regulation of chromatin dynamics, gene expression, cell growth and differentiation [\u003cspan citationid=\"CR17\" class=\"CitationRef\"\u003e17\u003c/span\u003e]. lncRNAs participate in a variety of cellular or biological processes by interacting with various biological macromolecules such as DNA, proteins and RNAs (including mRNAs, microRNAs and other lncRNAs) [\u003cspan additionalcitationids=\"CR9 CR10 CR11\" citationid=\"CR8\" class=\"CitationRef\"\u003e8\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR12\" class=\"CitationRef\"\u003e12\u003c/span\u003e]. lncRNAs have been identified to be involved in many complex cellular processes, such as cell death, growth, differentiation, apoptosis, epigenetic regulation, genomic imprinting, splicing, post transcriptional gene expression regulation, chromatin modification, inflammation, etc. [\u003cspan additionalcitationids=\"CR14 CR15 CR16 CR17 CR18 CR19 CR20\" citationid=\"CR13\" class=\"CitationRef\"\u003e13\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR21\" class=\"CitationRef\"\u003e21\u003c/span\u003e]. Recent studies have shown that some lncRNAs are highly expressed in various human cancers and play an important role in tumorigenesis, apoptosis, invasion and metastasis [\u003cspan additionalcitationids=\"CR23\" citationid=\"CR22\" class=\"CitationRef\"\u003e22\u003c/span\u003e\u0026ndash;\u003cspan citationid=\"CR24\" class=\"CitationRef\"\u003e24\u003c/span\u003e]. In view of the high stability of exosome lncRNAs in body fluids, exosomal lncRNAs have a wide application potentiality in early cancer diagnosis.\u003c/p\u003e"},{"header":"Patients and Methods","content":"\u003cdiv id=\"Sec3\" class=\"Section2\"\u003e \u003ch2\u003ePatients\u003c/h2\u003e \u003cp\u003eNinety three plasma samples were collected from the patients with early gastric cancer in the Beijing 301 Hospital from 2018 to 2019 and 49 normal control plasma samples were obtained from the Jiangsu Oilfield General Hospital. All gastric cancer patients should be: (1) cancers by pathological diagnosis belong to early stage; (2) none received any cancer treatment. The following patients were excluded: (1) patients who were suffering from other cancers at the same time; (2) patients who were suffering from functional damage to their heart, liver and kidney. Clinical information was available for all gastric cancer patients and normal controls involved in the study. The study was approved by the Beijing 301 Hospital ethics committee, and all subjects signed the informed consent form. The plasma was isolated by centrifuged at 2000g for 10 minutes within two hours after obtaining the blood samples. The separated plasma was stored in a refrigerator at \u0026minus;\u0026thinsp;80℃.\u003c/p\u003e \u003c/div\u003e\n\u003ch3\u003eIsolation of exosomes\u003c/h3\u003e\n\u003cp\u003e1.5 ml plasma samples were first passed through a 0.8 \u0026micro;m diameter filter membrane (Millipore). Then, exosomes and exosomal RNA were isolateted according to the procedure of exorneasy MIDI Kit (Qiagen). The obtained exosomes were resuspended with 40\u0026micro;l PBS and stored in -80 ℃ refrigerator for further analysis.\u003c/p\u003e \u003cdiv id=\"Sec5\" class=\"Section2\"\u003e \u003ch2\u003eIdentification of exosomes\u003c/h2\u003e \u003cdiv id=\"Sec6\" class=\"Section3\"\u003e \u003ch2\u003eNTA analysis\u003c/h2\u003e \u003cp\u003eThe concentration and particle size of exosomes were analyzed by Nanoparticle Tracking Analysis(NTA)with ZetaView(Particle Metrix,German ).\u003c/p\u003e \u003c/div\u003e \u003c/div\u003e \u003cdiv id=\"Sec7\" class=\"Section2\"\u003e \u003ch2\u003eTransmission Electron Microscopy(TEM) analysis\u003c/h2\u003e \u003cp\u003eFirst the copper mesh containing 10\u0026micro;l freshly isolated exosome samples were placed on the filter paper. After sucking the excess samples with the filter paper, the samples were dried in the air for 5 minutes. Then 1% uranyl acetate and negative dye were added on samples and standed for 2 minutes. After sucking the excess dye and drying in the air for 40 minutes, the samples were observed under transmission electron microscope( G2 F30 S-TWIN, FEI).\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec8\" class=\"Section2\"\u003e \u003ch2\u003eWestern Blot\u003c/h2\u003e \u003cp\u003eExosomes were lysed in standard RIPA buffer supplemented with protease and phosphatase inhibitor cocktails (Roche). The amount of proteins was measured with a BCA protein assay kit (Beyotime, China). The protein was solubilized with loading buffer (5\u0026times;) and heated at 100\u0026deg;C for 10 min. Proteins were separated by SDS-PAGE and then transferred to a 0.2-\u0026micro;m PVDF membrane (BioRad, USA). After blocking with Odyssey Blocking Buffer (Li-COR Biosciences, USA), the membrane was incubated with primary antibody (1:1000, rabit anti-CD9, CD63 )at 4\u0026deg;C overnight, then incubated with secondary antibodies (1:5000, Goat anti-rabbit IgG).\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec9\" class=\"Section2\"\u003e \u003ch2\u003eHigh throughput sequencing of exosomal RNAs\u003c/h2\u003e \u003cp\u003ePlasma exosomal RNAs from 5 patients with early gastric cancer and 5 normal controls were used for high-throughput RNA sequencing. Exosomal RNAs were extracted using exorneasy MIDI Kit (Qiagen) and quantified with Nanodrop. The quality of RNA was assessed by capillary electrophoresis on an Agilent 2100 Bioanalyzer (Agilent Technologies, CA). High throughput RNA sequencing was completed by Baimike company (Beijing) and RNA sequencing was done using Illumina hiseq platform.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec10\" class=\"Section2\"\u003e \u003ch2\u003eReal-time quantitative PCR\u003c/h2\u003e \u003cp\u003ePurified RNA was reversely transcribed into cDNA using the Hiscript Q RT SuperMix. Then, qRT-PCR was performed using SYBR Green assays (Vazyme) on a BIO-RAD CFX Connect system. The reactions were incubated at 95\u0026deg;C for 10 min, followed by 45 cycles of 95\u0026deg;C for 5 seconds and 60\u0026deg;C for 30 seconds. All experiments were conducted in triplicate, and the products were confirmed by melting curve analysis following each reaction. The level of each candidate lncRNA was normalized to that of GAPDH. The primers used for PCR are as followings: lncMSTRG.1319590: (forward) 5\u0026prime;-AGAGTCTCGTTCGTTATCG-3\u0026prime; and (reverse) 5\u0026prime;-CGGACAGGATTGACAGATT-3\u0026prime;;\u003c/p\u003e \u003cp\u003elncMSTRG.2312697: (forward) 5\u0026prime;-TCCATCCATCCATCATCTATC-3\u0026prime; and (reverse) 5\u0026prime;-ATGCTGGATGAATGGAGAAT-3\u0026prime;;\u003c/p\u003e \u003cp\u003elncENSG00000095932 : (forward) 5\u0026prime;-TCCATCCATCCATCATCCA-3\u0026prime; and (reverse) 5\u0026prime;-AGTGGGTGAATGGGTGAG-3\u0026prime;;\u003c/p\u003e \u003cp\u003elncENSG00000182162: (forward) 5\u0026prime;-ATGAATGAGTGAGTGAATGG-3\u0026prime; and (reverse) 5\u0026prime;-CATCCATCCATCCATCCAT-3\u0026prime;.;\u003c/p\u003e \u003cp\u003elncENSG0000014881: (forward) 5\u0026prime;-CACTTACACCCACCCTTAC-3\u0026prime; and (reverse) 5\u0026prime;-GGCGTGGAGGTAGATGTA-3\u0026prime;;\u003c/p\u003e \u003cp\u003elncENSG00000214226: (forward) 5\u0026prime;-CACCATCAGCACCATCAC-3\u0026prime; and (reverse) 5\u0026prime;-TTGTGGTGGTGGTAATAGTG-3\u0026prime;;\u003c/p\u003e \u003cp\u003eGAPDH: (forward) 5\u0026prime;-CCGGGAAACTGTGGCGTGATGG-3\u0026prime; and (reverse) 5\u0026prime;-AGGTGGAGGAGTGGGTGTCGCTGTT-3\u0026prime;.\u003c/p\u003e \u003cp\u003eThe relative expression levels of the lncRNAs were calculated using the 2\u0026thinsp;\u0026minus;\u0026thinsp;ΔΔCT method.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec11\" class=\"Section2\"\u003e \u003ch2\u003eStatistical analysis\u003c/h2\u003e \u003cp\u003eAll statistical analyses were performed with SPSS 22.0 and GraphPad Prism 8.0 Software. The difference of the expression levels of plasma exosomal lncRNAs between GC patients and normal controls were evaluated by a Student\u0026rsquo;s \u003cem\u003et\u003c/em\u003e-test or one-way ANOVA. Receiver operating characteristic curve (ROC) and area under curve (AUC) were used to estimate the diagnostic value of each index for GC. A combined ROC was calculated on the basis of the logistic regression model. \u003cem\u003eP\u003c/em\u003e\u0026thinsp;\u0026lt;\u0026thinsp;0.05 was regarded as statistically significant.\u003c/p\u003e \u003c/div\u003e"},{"header":"Results","content":"\u003cdiv id=\"Sec13\" class=\"Section2\"\u003e\n \u003ch2\u003eCharacteristics of plasma exosomes\u003c/h2\u003e\n \u003cp\u003eWe successfully extracted relatively pure plasma exosomes through the kit, and identified the isolated exosomes by transmission electron microscope, particle size analysis and Western blot.Exosomes with typical \u0026quot;cup cap\u0026quot; morphology can be directly observed by projection electron microscope (see Fig. \u003cspan class=\"InternalRef\"\u003e1\u003c/span\u003ea).The particle size analysis shows that the average diameter of exosomes is 128.8 nm, which is in line with the diameter range of exosomes obtained in various current studies (Fig. \u003cspan class=\"InternalRef\"\u003e1\u003c/span\u003eb).Western blot showed that both marker proteins CD9 and CD63 were expressed in exosomes (see Fig.\u0026nbsp;\u003cspan class=\"InternalRef\"\u003e1\u003c/span\u003ec), which was consistent with the characteristics of exosomes. The above results show that we have successfully extracted exosomes from plasma.\u003cbr\u003e\u003cbr\u003e\u003cstrong\u003eScreening of differentially expressed exosomal lncRNAs in early gastric cancer by high throughput RNA sequencing assay\u003c/strong\u003e\u003c/p\u003e\n\u003c/div\u003e\n\u003cdiv id=\"Sec17\" class=\"Section2\"\u003e\n \u003cp\u003eWe extracted plasma exosomal RNA from 5 patients with early gastric cancer and 5 normal controls for high-throughput RNA sequencing assay. The sequencing results showed that 76 lncRNAs were up-regulated and 260 lncRNAs were down-regulated compared with the normal controls (fold change\u0026thinsp;\u0026ge;\u0026thinsp;1.5, \u003cem\u003eP\u003c/em\u003e\u0026thinsp;\u0026lt;\u0026thinsp;0.05). The difference of lncRNA expression levels between gastric cancer group and control group can be seen by volcano map and heat map (Fig. \u003cspan class=\"InternalRef\"\u003e2\u003c/span\u003e). Seven lncRNAs with the largest expression difference were selected for the further verification.\u003c/p\u003e\n \u003cp\u003eVerification of selected differentially expressed exosomal lncRNAs in plasma samples of gastric cancer patients\u003c/p\u003e\n\u003c/div\u003e\n\u003cdiv id=\"Sec19\" class=\"Section2\"\u003e\n \u003cp\u003eTo verify the differential expression of exosomal lncRNAs in early gastric cancer patients, plasma exosomes and RNA were isolated from 93 patients with early gastric cancer and 49 normal controls. Seven lncRNAs with the largest differential expression were selected from 336 differential expression lncRNAs. These lncRNAs were further confirmed by RT-qPCR (Fig. \u003cspan class=\"InternalRef\"\u003e3\u003c/span\u003eA-F).The results indicated that 6 lncRNAs showed significant differences in the expression levels between the gastric cancer group and the control group (\u003cem\u003eP\u003c/em\u003e\u0026thinsp;\u0026lt;\u0026thinsp;0.05), of which 2 lncRNAs (lncmstrg1319590 and lncmstrg2312697) were highly expressed and 4 were lowly expressed in the plasma exosomes of gastric cancer patients (lncmstrg 1004024.1, lncmstrg2441832.8, lncmstrg315376.1, lncmstrg907985.2).\u003c/p\u003e\n \u003cp\u003eThe verification of differentially expressed exosomal lncRNAs in clinical samples\u003c/p\u003e\n\u003c/div\u003e\n\u003cdiv id=\"Sec22\" class=\"Section2\"\u003e\n \u003cdiv id=\"Sec23\" class=\"Section3\"\u003e\n \u003cp\u003eBased on the six differentially expressed lncRNAs in the plasma exosomes of early gastric cancer patients with the largest difference, we used the receiver operating characteristic curve (ROC) to calculate the specificity and sensitivity of the differentially expressed lncRNAs for the early diagnosis of gastric cancer and decided whether they would have diagnostic advantage compared with the traditional tumor markers like CEA, CA199 and AFP. ROC results indicated that lncmstrg.2441832.8 and lncmstrg.2312697 had higher sensitivity and specificity for the diagnosis of gastric cancer, respectively. The Area Under Curves (AUCs) were 0.6211 and 0.631 (\u003cem\u003eP\u003c/em\u003e\u0026thinsp;\u0026lt;\u0026thinsp;0.05), while AUCs of CEA and AFP were 0.61 and 0.57, respectively. When we combined lncmstrg.2441832.8 with lncmstrg.2312697 to diagnose early gastric cancer, the AUCreached 0.73, was greater than 0.71 of CA199 (Fig. \u003cspan class=\"InternalRef\"\u003e4\u003c/span\u003eA-B). These results indicate that lncmstrg.2441832.8 and lncmstrg.2312697 may be used as potential biomarkers for early diagnosis of gastric cancer.\u003c/p\u003e\n \u003c/div\u003e\n\u003c/div\u003e"},{"header":"DISCUSSION","content":"\u003cp\u003eGastric cancer is one of the common malignant tumors endangering human health. Because the current commonly used tumor markers can not accurately diagnose gastric cancer, especially early gastric cancer, gastric cancer is usually found in the middle and late stage, which seriously affects the treatment and prognosis of patients. The five-year survival rate is usually only 10\u0026ndash;30%[ 25\u0026ndash;26]\u003c/p\u003e \u003cp\u003eThe rise and development of liquid biopsy technology provides a technical means for early detection of tumor specific markers in patients' blood. Its noninvasive, sensitivity and accuracy bring new hope for early tumor diagnosis. After early detection and standardized treatment, the five-year survival rate of gastric cancer can reach more than 90%.Exosome detection is an important part of liquid biopsy technology. Exosomes are vesicle like bodies actively secreted by a variety of living cells. There are a variety of bioactive substances in exosomes, including DNA, protein, mRNA, miRNA, lnRNA, etc. Exosomes are representative of source cells and can carry specific biological macromolecules of source cells, including tumor cells, such as protein, lncRNA \u003cem\u003eetc\u003c/em\u003e. It can reflect the pathophysiological state of tumor patients and the nature of primary tumors, and is expected to be used in the clinical diagnosis of malignant tumors [\u003cspan citationid=\"CR27\" class=\"CitationRef\"\u003e27\u003c/span\u003e].\u003c/p\u003e \u003cp\u003eExosome encapsulated lncRNA has good stability in blood and is usually considered as a biomarker for early diagnosis of gastric cancer. Studies have shown that the high expression of hottip in serum exosomes is positively correlated with tumor size, pathological stage, metastasis and prognosis of patients with gastric cancer. Hottip can mediate cell proliferation by inhibiting p21 or leading to miRNA silencing. The expression of hottip in plasma exosomes of patients with gastric cancer was increased significantly, and the area under AUC curve was 0.827, which was significantly higher than clinical biomarkers such as CEA and CA199 [\u003cspan citationid=\"CR28\" class=\"CitationRef\"\u003e28\u003c/span\u003e].Through sequencing analysis of plasma exosomal RNA, it was found that plasma exosomal lnceegc1 was significantly up-regulated in patients with early gastric cancer, and the product under the subject curve was 0.84, which was much higher than conventional markers such as CEA [\u003cspan citationid=\"CR29\" class=\"CitationRef\"\u003e29\u003c/span\u003e]. In addition, linc00152, zfas1, ufc1 and hotair in plasma (serum) exosomes have also been proved to be potential biomarkers for early diagnosis of gastric cancer.\u003c/p\u003e \u003cp\u003e In this study, 336 differentially expressed lncRNAs were obtained by high-throughput sequencing analysis of RNA in exosomes of early gastric cancer and normal control, of which 76 were up-regulated and 269 were down regulated in gastric cancer samples.We selected 7 lncRNAs with the largest differential expression changes were selected for further verification, and further obtained 6 differentially expressed lncRNAs, including 2 with higher expression and 4 with lower expression were obtained.Through ROC analysis, we infered that lncmstrg.2441832.8 was finally obtained, and lncmstrg.2312697 can be used as lncRNA biomarkers for early diagnosis biomarkers of gastric cancer. To our knowledge, at present, as far as we know, the above two potential lncRNA biomarkers have not been reported so farfound by other studies, and their biological functions and target genes need to be further studied. Additionally, The number of gastric cancer and controls included in this study is not enough. We need to increase the sample size to deeply analyze the diagnostic specificity and sensitivity of lncmstrg.2441832.8 and lncmstrg.2312697. In conclusion, we obtained the differentially expressed lncRNAs in plasma exosomes of early gastric cancer patients through high-throughput sequencing., and verified them in large-scale samples. Finally, We further obtained identify two exosomal lncRNA biomarkers that may are expected to be used as potential biomarkers for early diagnosis of gastric cancer.\u003c/p\u003e"},{"header":"Declarations","content":"\u003cp\u003e\u003cstrong\u003eEthics approval and consent to participate\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eEthic of experiment was approved by Yangzhou University . The reference number is 2021BW071.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eConsent for publication\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eNot applicable.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003e\u0026nbsp;\u003c/strong\u003e\u003cstrong\u003eAvailability of data and materials\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe data underlying this article will be shared on reasonable request to the corresponding author.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eFunding\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThis study was supported by the national key R\u0026amp;D Program \u0026quot;Research on multidimensional molecular typing and diagnostic molecular markers of gastrointestinal cancer\u0026quot; (2016YFC1303604).\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eCompeting interest\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe authors declare no competing interests.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eAuthor\u0026rsquo;s Contribution\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eYe wei and xuming hu wrote the main manuscript\u0026nbsp;,All authors reviewed the manuscript.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eConsent for publication\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eNot applicable.\u003c/p\u003e"},{"header":"References","content":"\u003col\u003e\n\u003cli\u003eLatest global cancer data: Cancer burden rises to 19.3 million new cases and 10.0 million cancer deaths in 2020. WHO.\u003c/li\u003e\n\u003cli\u003e.Hill AF.Exosomes and microvesicles: methods and protocols[M].Switzerland AG: Springer Nature,2017.\u003c/li\u003e\n\u003cli\u003e.Cui S,Cheng Z,Qin W,et al.Exosomes as a liquid biopsy for lung cancer[J].Lung cancer,2018,116: 46-54.\u003c/li\u003e\n\u003cli\u003eVlassov AV, Magdaleno S,Setterquist R,et al. Exosomes: current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials[J]. Biochimica Biophysic Acta, 2012,1820(7):940-948.\u003c/li\u003e\n\u003cli\u003eYelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, Shoshan A, et al. Widespread occurrence of antisense transcription in the human genome. Nature biotechnology. 2003; 21: 379-86.\u003c/li\u003e\n\u003cli\u003eKatayama Ss Tomaru Y, Kasukawa Ts Waki K, Nakanishi M, Nakamura M, et al. Antisense transcription in the mammalian transcriptome. Science. 2005; 309: 1564-6. \u003c/li\u003e\n\u003cli\u003eBhan A, Mandal SS. lncRNA HOTAIR: A master regulator of chromatin dynamics and cancer. Biochimica et biophysica acta. 2015; 1856: 151-64. \u003c/li\u003e\n\u003cli\u003e.Functionality. Trends in genetics: TIG. 2017; 33: 665-76.\u003c/li\u003e\n\u003cli\u003ePeng Z, Liu C, Wu M. New insights into long noncoding RNAs and their roles in glioma. Molecular cancer, 2018; 17: 61. \u003c/li\u003e\n\u003cli\u003eMorlando M, Fatica A. Alteration of Epigenetic Regulation by Long Noncoding RNAs in Cancer. InteRNAtional jouRNAl of molecular sciences. 2018; 19.\u003c/li\u003e\n\u003cli\u003eAng L, Tang Y, Xiong F, He Y, Wei F, Zhang S, et al. lncRNAs regulate cancer metastasis via binding to functional proteins. Oncotarget. 2018; 9: 1426-43. \u003c/li\u003e\n\u003cli\u003eKopp F, Mendell JT. Functional Classification and Experimental Dissection of Long Noncoding RNAs. Cell. 2018; 172: 393-407. \u003c/li\u003e\n\u003cli\u003eHu W, Alvarez-Dominguez JR, Lodish HF. Regulation of mammalian cell \u003c/li\u003e\n\u003cli\u003eDifferentiation by long non-coding RNAs. EMBO reports. 2012; 13: 971-83.\u003c/li\u003e\n\u003cli\u003eFlynn RA, Chang HY. Long noncoding RNAs in cell-fate programming and reprogramming. Cell stem cell. 2014; 14: 752-61. \u003c/li\u003e\n\u003cli\u003eRossi MN, Antonangeli F. lncRNAs: New Players in Apoptosis Control. InteRNAtional jouRNAl of cell biology. 2014; 2014: 473857. \u003c/li\u003e\n\u003cli\u003eHarries LW. Long non-coding RNAs and human disease. Biochemical Society transactions. 2012; 40: 902-6. \u003c/li\u003e\n\u003cli\u003eQian K, Liu G, Tang Z, Hu Y, Fang Y, Chen Z, et al. The long non-coding RNA NEAT1 interacted with miR-101 modulates breast cancer growth by targeting EZH2. Archives of biochemistry and biophysics. 2017; 615: 1-9. \u003c/li\u003e\n\u003cli\u003eLiu B,Pan CF,He ZC, Wang J,Wang PL,Ma T, et al. Long Noncoding RNA-LET Suppresses Tumor Growth and EMT in Lung Adenocarcinoma. BioMed research inteRNAtional. 2016; 2016: 4693471. \u003c/li\u003e\n\u003cli\u003eZhang K, Shi H, Xi H, Wu X, Cui J, Gao Y, et al. Genome-Wide IncRNA Microarray Profiling Identifies Novel Circulating IncRNAs for Detection of Gastric Cancer. Theranostics. 2017; 7:213-27.\u003c/li\u003e\n\u003cli\u003eYang ZY, Yang F, Zhang YL, Liu B, Wang M, Hong X, et al. lncRNA-ANCR down-regulation suppresses invasion and migration of colorectal cancer cells by regulating EZH2 expression. Cancer biomarkers: section A of Disease markers. 2017; 18: 95-104.\u003c/li\u003e\n\u003cli\u003eEvans JR, Feng FY, Chinnaiyan AM. The bright side of dark matter: IncRNAs in cancer. The JouRNAl of clinical investigation. 2016; 126: 2775-82.\u003c/li\u003e\n\u003cli\u003eChen QN, Wei CC, Wang ZX, Sun M. Long non-coding RNAs in anti-cancer drug resistance. Oncotarget. 2016.\u003c/li\u003e\n\u003cli\u003eLin Y, Qian F, Shen L, Chen F, Chen J, Shen B. Computer-aided biomarker discovery for precision medicine: data resources, models and applications. Briefings in bioinformatics. 2017.\u003c/li\u003e\n\u003cli\u003eSitarz R, Skierucha M, Mielko J et al (2018) Gastric cancer: epidemiology, prevention, classifcation, and treatment. Cancer Manag Res 10:239\u0026ndash;248. https://doi.org/10.2147/CMAR.S149619\u003c/li\u003e\n\u003cli\u003eJeddi F, Soozangar N, Sadeghi MR et al (2018) Nrf2 overexpression is associated with P-glycoprotein upregulation in gastric cancer. Biomed Pharmacother 97:286\u0026ndash;292. \u003c/li\u003e\n\u003cli\u003eClayton A,Mason MD. Exosomes in tumour immunity [J]. Curr Oncol,2009,16(3):46-49\u003c/li\u003e\n\u003cli\u003eZhao R, Zhang Y, Zhang X et al (2018) Exosomal long noncoding RNA HOTTIP as potential novel diagnostic and prognostic biomarker test for gastric cancer. Mol Cancer 17:68. \u003c/li\u003e\n\u003cli\u003eHao Xu1 , Jie Zhou,Jin Tang et al (2020) Tumor-originated exosomal lncUEGC1 as a circulating biomarker for early-stage gastric cancer.JouRNAl of Clinical Laboratory Analysis.2020;00:e23323\u003c/li\u003e\n\u003c/ol\u003e"}],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":true,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":true,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":false,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":false,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true},"keywords":"gastric cancer, exosome, lncRNA, diagnosis biomarker","lastPublishedDoi":"10.21203/rs.3.rs-4156888/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-4156888/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003e\u003cstrong\u003eBackground,\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003ethere were about 1,090,000 gastric cancer(GC) cases in 2020 in China. The incidence and mortality rates ranked the fifth and third among all kinds of cancers in China. Early diagnosis plays an important role in the treatment and prognosis of gastric cancer. In recent years, noninvasive diagnosis, especially plasma exosome lncRNAs, has become a promissing biomarkers with high specificity and sensitivity for early diagnosis of cancers.\u0026nbsp;\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eMethods\u003c/strong\u003e, in this study, the exosomes in the plasma of patients with early gastric cancer were isolated by a commercial kit. After identified by electron microscopy observation, particle size analysis and western-blot verification, the lncRNAs in the exosomes were extracted. The lncRNAs differentially expressed in the plasma exosomes of patients with gastric cancer were analysized by high-throughput RNA sequencing(RNA-Seq). The differentially expressed lncRNAs were verified by RT-qPCR in 93 patients with early gastric cancer and 49 normal controls.\u0026nbsp;\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eResults\u003c/strong\u003e, Electron microscopy, particle size analysis and western blot showed that exosomes were successfully isolated from plasma. RNA-Seq results show that 76 lncRNAs were up-regulated and 260 lncRNAs were down regulated in plasma exosomes of early gastric cancer patients compared with normal controls. RT-qPCR analysis indicated that a total of 6 lncRNAs were significantly and differentially expressed in gastric cancer patients compared to normal controls, with 2 (lncmstrg. 1319590,Lncmstrg. 2312697) highly expressed and 4 lowly expressed (lncmstr-g.1004024.1, lncmstrg. 2441832.8, lncmstrg. 315376.1, lncmstrg. 907985.2,)(\u003cem\u003ep\u003c/em\u003e \u0026lt; 0.05). The survival curve analysis indicated that lncmstrg.2441832.8 and lncmstrg.2312697 had higher sensitivity and specificity for the diagnosis of gastric cancer, respectively and AUC curve areas were 0.6211 and 0.631, \u003cem\u003ep\u003c/em\u003e \u0026lt; 0.05, respectively, which were greater than the traditional clinical detection indexes CEA (0.61) and AFP (0.57). When combined lncmstrg.2441832.8 and lncmstrg.2312697 in gastric cancer diagnosis, AUC curve area reached 0.73, which was greater than CA199 (0.71).\u0026nbsp;\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eConclusion\u003c/strong\u003e, lncmstrg.2441832.8 and lncmstrg.2312697 may be a potential and promissing biomarkers for early diagnosis of gastric cancer.\u003c/p\u003e","manuscriptTitle":"Identification of plasma exosomal lncRNA as a biomarker for early diagnosis of gastric cancer","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2024-03-29 18:42:23","doi":"10.21203/rs.3.rs-4156888/v1","editorialEvents":[{"type":"communityComments","content":0}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"f74b12f8-e5d0-4d0a-b49c-d303c4cd26b4","owner":[],"postedDate":"March 29th, 2024","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"posted","subjectAreas":[],"tags":[],"updatedAt":"2024-03-29T18:42:25+00:00","versionOfRecord":[],"versionCreatedAt":"2024-03-29 18:42:23","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-4156888","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-4156888","identity":"rs-4156888","version":["v1"]},"buildId":"_2-kVJe1T_tPrBINL-cwx","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

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