Biocatalytic Radical C(sp³)–N Coupling via Active Site Templating

preprint OA: closed CC-BY-4.0
📄 Open PDF Full text JSON View at publisher
AI-generated deep summary by claude@2026-06, 2026-06-24 · read from full text

The paper studied a copper-free, photoenzymatic radical mechanism for enantioselective nucleophilic substitution to form C(sp³)–N bonds between tertiary alkyl halides and simple anilines, using a flavin-dependent oxidoreductase engineered through six rounds of protein engineering. The authors report that the engineered enzyme yields good reaction yields with high chemoselectivity for N over competing C alkylation and high enantioselectivity across a broad substrate range. Multivariate statistical analysis, density functional theory, and mechanistic experiments attribute the selectivity to active-site templating via π stacking, hydrogen bonding, and water-bridged interactions that stabilize an intermolecular n→SOMO hyperconjugative complex while suppressing an energetically disfavored radical addition pathway in bulk solution. The study is explicitly presented as a preprint that has not been peer reviewed. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Abstract Stereoselective nucleophilic substitution to access α tertiary amines relies on copper catalyzed radical approaches in which the substitution is mediated by metal–anilide coordination.1 These systems, however, are constrained by competing arene radical alkylation pathways.2 Here we report a distinct photoenzymatic mechanism for enantioconvergent nucleophilic substitution that operates without metal coordination to the nucleophile. Six rounds of protein engineering yielded a variant of a flavin dependent oxidoreductase that promotes C(sp³)–N coupling between tertiary alkyl halides and simple anilines in good yields, with high chemoselectivity for N over C alkylation and high enantioselectivity across a broad substrate range. Multivariate statistical analysis, density functional theory, and mechanistic experiments show that the active site templates π stacking, hydrogen bonding, and water bridged interactions between a tertiary radical and the aniline lone pair to generate an intermolecular n→SOMO hyperconjugative complex that is energetically disfavored in bulk solution, thereby simultaneously lowering the radical oxidation potential and suppressing arene addition.3 This work uncovers a previously inaccessible, copper free manifold for nucleophilic substitution at sterically congested carbon centers and expands how enzymes can catalyze C(sp³)–N bond formation with control over both stereo and chemoselectivity.
Full text 12,742 characters · extracted from preprint-html · click to expand
Biocatalytic Radical C(sp³)–N Coupling via Active Site Templating | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Biocatalytic Radical C(sp³)–N Coupling via Active Site Templating Todd Hyster, Zayed Alassad This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-9204910/v1 This work is licensed under a CC BY 4.0 License Status: Under Review Version 1 posted You are reading this latest preprint version Abstract Stereoselective nucleophilic substitution to access α tertiary amines relies on copper catalyzed radical approaches in which the substitution is mediated by metal–anilide coordination.1 These systems, however, are constrained by competing arene radical alkylation pathways.2 Here we report a distinct photoenzymatic mechanism for enantioconvergent nucleophilic substitution that operates without metal coordination to the nucleophile. Six rounds of protein engineering yielded a variant of a flavin dependent oxidoreductase that promotes C(sp³)–N coupling between tertiary alkyl halides and simple anilines in good yields, with high chemoselectivity for N over C alkylation and high enantioselectivity across a broad substrate range. Multivariate statistical analysis, density functional theory, and mechanistic experiments show that the active site templates π stacking, hydrogen bonding, and water bridged interactions between a tertiary radical and the aniline lone pair to generate an intermolecular n→SOMO hyperconjugative complex that is energetically disfavored in bulk solution, thereby simultaneously lowering the radical oxidation potential and suppressing arene addition.3 This work uncovers a previously inaccessible, copper free manifold for nucleophilic substitution at sterically congested carbon centers and expands how enzymes can catalyze C(sp³)–N bond formation with control over both stereo and chemoselectivity. Physical sciences/Chemistry/Catalysis/Biocatalysis Physical sciences/Chemistry/Photochemistry/Photocatalysis Full Text Additional Declarations There is NO Competing Interest. Supplementary Files model2026.csv Modelling Excel File RedoxCalculations.xlsx Excel of Redox Calculations SupplementalInformation.pdf Supplemental Information SIDFT.zip DFT Calculation Files Codeformultivariatemodel.docx Multivariate Model Cite Share Download PDF Status: Under Review Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-9204910","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":615372430,"identity":"6feb07b9-9a5e-4bd0-b387-0524fa068bc6","order_by":0,"name":"Todd Hyster","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAA6UlEQVRIiWNgGAWjYDACCQglx8DA2IAuiB3wgGQPMDAYQ7UYEK8lEWoFEVrspXuMP3+ouJe+Xfpw24MfFX/kzBmYD97mwWeLzBkziQNninN39iW2G/acMTC2bGBLtsarRSLHjOFgW0LuhjOMbdKMbQaJGw7wmEkT0GL84eC/hHQDsJZ/IC383whpMZA42JCQANHSALaFDb+WG2llEmeOJRju7GFsk+w5ZmxscJjN2HIOHi3sM5I3f6ioSZA352F/JvGjRk7O4Hjzwxtv8GhhYOCARIUBXIAZr3KwPQ/QtIyCUTAKRsEoQAMAryxJd2CkDSEAAAAASUVORK5CYII=","orcid":"https://orcid.org/0000-0003-3560-355X","institution":"Princeton University","correspondingAuthor":true,"prefix":"","firstName":"Todd","middleName":"","lastName":"Hyster","suffix":""},{"id":615372431,"identity":"d621baa0-9c3c-4b4c-ac88-8f9253380d81","order_by":1,"name":"Zayed Alassad","email":"","orcid":"","institution":"Princeton University","correspondingAuthor":false,"prefix":"","firstName":"Zayed","middleName":"","lastName":"Alassad","suffix":""}],"badges":[],"createdAt":"2026-03-23 23:20:28","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-9204910/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-9204910/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":106096517,"identity":"252b38a8-f248-44fd-a09a-61aad6942120","added_by":"auto","created_at":"2026-04-03 11:54:53","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":1088631,"visible":true,"origin":"","legend":"Article File","description":"","filename":"Manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1_covered_df1b5e66-708a-4e98-92e9-789eefaeb499.pdf"},{"id":106084470,"identity":"a4e16d1e-a95a-4df3-b01b-ef9fd7f350c7","added_by":"auto","created_at":"2026-04-03 09:20:32","extension":"csv","order_by":1,"title":"","display":"","copyAsset":false,"role":"supplement","size":1442,"visible":true,"origin":"","legend":"Modelling Excel File","description":"","filename":"model2026.csv","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1/7356f20f626e5026cdc735cb.csv"},{"id":106084472,"identity":"a9d78841-e59b-4517-a5b4-ff3f413dbbdf","added_by":"auto","created_at":"2026-04-03 09:20:32","extension":"xlsx","order_by":2,"title":"","display":"","copyAsset":false,"role":"supplement","size":13132,"visible":true,"origin":"","legend":"Excel of Redox Calculations","description":"","filename":"RedoxCalculations.xlsx","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1/0f467afe94a71b526a165d07.xlsx"},{"id":106084471,"identity":"e6d83669-8bd4-4cbf-b8c8-6bac79ef26d6","added_by":"auto","created_at":"2026-04-03 09:20:32","extension":"pdf","order_by":3,"title":"","display":"","copyAsset":false,"role":"supplement","size":6892532,"visible":true,"origin":"","legend":"Supplemental Information","description":"","filename":"SupplementalInformation.pdf","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1/61e475f6e3a9ea5006316551.pdf"},{"id":106094998,"identity":"93836784-7630-4c15-bcf7-09319d4fb241","added_by":"auto","created_at":"2026-04-03 11:43:54","extension":"zip","order_by":4,"title":"","display":"","copyAsset":false,"role":"supplement","size":9677545,"visible":true,"origin":"","legend":"DFT Calculation Files","description":"","filename":"SIDFT.zip","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1/d2730b1ddc75602d6636bd0d.zip"},{"id":106084473,"identity":"b2c7b8a7-87c1-4093-85e4-439acafccb9e","added_by":"auto","created_at":"2026-04-03 09:20:32","extension":"docx","order_by":5,"title":"","display":"","copyAsset":false,"role":"supplement","size":16389,"visible":true,"origin":"","legend":"Multivariate Model","description":"","filename":"Codeformultivariatemodel.docx","url":"https://assets-eu.researchsquare.com/files/rs-9204910/v1/628826318ff40cff7a0b95ea.docx"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Biocatalytic Radical C(sp³)–N Coupling via Active Site Templating","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"","lastPublishedDoi":"10.21203/rs.3.rs-9204910/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-9204910/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Stereoselective nucleophilic substitution to access α tertiary amines relies on copper catalyzed radical approaches in which the substitution is mediated by metal–anilide coordination.1 These systems, however, are constrained by competing arene radical alkylation pathways.2 Here we report a distinct photoenzymatic mechanism for enantioconvergent nucleophilic substitution that operates without metal coordination to the nucleophile. Six rounds of protein engineering yielded a variant of a flavin dependent oxidoreductase that promotes C(sp³)–N coupling between tertiary alkyl halides and simple anilines in good yields, with high chemoselectivity for N over C alkylation and high enantioselectivity across a broad substrate range. Multivariate statistical analysis, density functional theory, and mechanistic experiments show that the active site templates π stacking, hydrogen bonding, and water bridged interactions between a tertiary radical and the aniline lone pair to generate an intermolecular n→SOMO hyperconjugative complex that is energetically disfavored in bulk solution, thereby simultaneously lowering the radical oxidation potential and suppressing arene addition.3 This work uncovers a previously inaccessible, copper free manifold for nucleophilic substitution at sterically congested carbon centers and expands how enzymes can catalyze C(sp³)–N bond formation with control over both stereo and chemoselectivity.","manuscriptTitle":"Biocatalytic Radical C(sp³)–N Coupling via Active Site Templating","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2026-04-03 09:20:28","doi":"10.21203/rs.3.rs-9204910/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"nature-chemistry","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"nchem","sideBox":"Learn more about [Nature Chemistry](http://www.nature.com/nchem/)","snPcode":"","submissionUrl":"","title":"Nature Chemistry","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Nature Research","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"c33b2600-88e8-406c-a0b8-2df7181e7ab6","owner":[],"postedDate":"April 3rd, 2026","published":true,"recentEditorialEvents":[{"type":"reviewersInvited","content":"4","date":"2026-05-12T11:26:43+00:00","index":"","fulltext":""}],"rejectedJournal":[],"revision":"","amendment":"","status":"under-review","subjectAreas":[{"id":65478214,"name":"Physical sciences/Chemistry/Catalysis/Biocatalysis"},{"id":65478215,"name":"Physical sciences/Chemistry/Photochemistry/Photocatalysis"}],"tags":[],"updatedAt":"2026-05-12T12:28:15+00:00","versionOfRecord":[],"versionCreatedAt":"2026-04-03 09:20:28","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-9204910","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-9204910","identity":"rs-9204910","version":["v1"]},"buildId":"XKTyCvWXoU3ODBz1xrDgd","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2026) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00
unpaywall
last seen: 2026-05-20T11:00:21.680559+00:00
License: CC-BY-4.0