The BeeBiome Data Portal provides easy access to bee microbiome information

Bees can be colonized by a large diversity of microbes, including beneficial gut symbionts and detrimental pathogens, with implications for bee health. Over the last few years, researchers around the world have collected a huge amount of genomic and transcriptomic data about the composition, genomic content, and gene expression of bee-associated microbial communities. While each of these datasets by itself has provided important insights, the integration of such datasets provides an unprecedented opportunity to obtain a global picture of the microbes associated with bees and their link to bee health. The challenge of such an approach is that datasets are difficult to find within large generalist repositories and are often not readily accessible, which hinders integrative analyses. Here we present a publicly-available online resource, the BeeBiome data portal (https://www.beebiome.org), which provides an overview of and easy access to currently available metagenomic datasets involving bee-associated microbes. Currently the data portal contains 33,678 Sequence Read Archive (SRA) experiments for 278 Apoidae hosts. We present the content and functionalities of this portal. DOI https://doi.org/10.32942/X20G8G Subjects Apiculture, Bioinformatics, Environmental Microbiology and Microbial Ecology Life Sciences

Dates Published: 2025-01-20 12:13 Last Updated: 2025-01-20 17:13 License CC BY Attribution 4.0 International Additional Metadata Conflict of interest statement: None Data and Code Availability Statement: BeeBiome is open source and all data is freely available under CC0 Language: English