Organic and inorganic geochemical cyclicity of a Maastrichtian oceanic open-shelf carbonate source rock

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This study investigates the Upper Cretaceous (Maastrichtian) source rocks present in the Al-Lajoun basin of central Jordan, to identify geochemical compositional variability corresponding to the paleo-environmental conditions during deposition. To this end, a multifaceted approach using Rock-Eval, SGR, XRD, XRF, ICP-OES, SEM-EDX, and thin-section petrography is utilized to understand bulk organic and inorganic geochemical proxies. Based on the results, the Jordan source rock is characterized as organic-rich, Type IIS kerogen, and thermally immature source rock, representing three distinct cycles of organic matter distribution. Cycle 1 is defined as organic-rich carbonate mudstones with an average total organic carbon (TOC) content of 17 wt.%. This cycle represents high organic matter productivity, anoxic bottom water conditions, and episodic detrital influx (clays and detrital quartz). Cycle 2 is characterized by silica-rich mudstones to wackestones with an average TOC of 15 wt.%, reflecting a shift from carbonate-dominated to silica-dominated biota, likely driven by increased nutrient supply and changing climatic conditions. These conditions resulted in high bioproductivity and highly reducing anoxic/euxinic bottom water conditions during deposition. Cycle 3 represents foraminiferal wackestones to packstones with an average TOC of 12 wt.%. This cycle is characterized by a relatively high detrital sediment input, with comparatively low organic matter productivity and anoxic bottom water conditions. The organic and inorganic geochemical variability between the identified cycles implies changing climatic conditions over the open shelf setting, which in turn implies changes in ocean currents impacting the upwelling system of the Tethys margin. Understanding this relationship between ocean currents, climate, and the organic and inorganic geochemical composition is crucial for efficiently exploring and exploiting organic-rich source rocks. A regional correlation of these cycles and their geochemical signatures could provide a powerful tool to trace ocean currents and associated climate change along the Tethys margin during the Early Maastrichtian. Earth and environmental sciences/Climate sciences/Palaeoclimate Physical sciences/Chemistry/Energy Earth and environmental sciences/Environmental sciences/Environmental chemistry/Geochemistry Physical sciences/Chemistry/Inorganic chemistry/Bioinorganic chemistry Physical sciences/Energy science and technology/Fossil fuels/Crude oil Source rock characterization Geochemical cyclicity Organic/Inorganic compositional heterogeneities Paleo-environmental conditions Jordan source rocks Figures Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 6 Figure 7 Figure 8 Figure 9 Figure 10 Figure 11 Figure 12 Figure 13 Figure 14 Figure 15 Figure 16 Figure 17 Figure 18 Figure 19 Introduction Organic-rich mudrocks serve as valuable archives of past environmental conditions and are critical for understanding the controls on organic matter accumulation and preservation. These source rocks deposited in environments that support high biological productivity (driven by factors such as ocean currents, climate, nutrient upwelling, and optimal sunlight) and coincide with low-oxygen bottom water conditions 1 . Such conditions allow organic matter to settle, accumulate, and later preserved on the seafloor. While marine conditions often facilitate organic matter accumulation, preservation is not limited to marine settings. In lacustrine systems, organic matter accumulation is further influenced by stratification and seasonal variation in oxygen levels 2 . Similarly, in terrestrial settings, organic matter can be retained in swamp and floodplain deposits where water saturation and rapid burial limit microbial degradation 3 . The interaction of organic matter with clays and carbonates, also play a crucial role in stabilizing organic material and reducing its susceptibility to microbial degradation 4 . Insights on the paleoenvironmental and depositional conditions of the organic matter can be gleaned through detailed organic and inorganic geochemical characterization 5-9 . The Cretaceous Period stands out for its abundance of organic-rich rocks, partly due to high sea level and the related flooding of vast shelf areas, the occurrence of multiple ocean anoxic events (OEAs), ocean upwelling systems, and high organic-matter production rates 10 . One good example of organic-rich deposits of late Cretaceous (Maastrichtian) age are the Jordan source rocks (JSR), also known as Jordan Oil shales (JOS). These source rocks are present in the lower part of the Muwaqqar Chalk Marl (MCM) Formation and are amongst the richest source rocks around the globe 11,12 (Figure 1). However, these source rocks are thermally immature and have not produced hydrocarbons on an economic scale 13 . The JSR has been the focus of several studies due to its high organic richness, shallow depths, and large areal occurrences across Jordan 14-16 . Numerous studies have been conducted to characterize these sequences as potential prospects for shale oil retorting 14,17,18 . Equivalent strata of Maastrichtian to Paleocene age have also been reported in other parts of the Eastern Mediterranean realm and are related to a large-scale upwelling system on the Southern margin of the Neo-Tethys Ocean during the late Cretaceous and early Paleogene time 19-22 . Despite variations in organic richness and thermal maturity across the Eastern Mediterranean region, these sequences show similarities in terms of organic and inorganic geochemical composition and hydrocarbon generation potential 6,20,23,24 . A key depositional control on the formation of source rocks is the interplay between global tectonics and sea-level fluctuations that have resulted in high-order cyclicity and compositional variability 25-28 . However, the factors governing these compositional heterogeneities within depositional cycles remain largely unexplored, leaving critical gaps in our understanding of their controls and implications. Consequently, the depositional environment, as well as the vertical and lateral variability in source rock quality, remains poorly constrained, particularly in the case of the JSR. By integrating organic and inorganic geochemical data from a core covering the entire JSR sequence with detailed petrographic analyses, this study aims to unravel the geochemical cyclicity and compositional heterogeneity within the JSR. The findings provide critical insights into the depositional architecture, paleoenvironmental dynamics, and key controls on organic matter preservation. Beyond its implications for the JSR, this research enhances hydrocarbon exploration and unconventional resource assessment, particularly for similar depositional settings. A refined understanding of geochemical variability in organic-rich mudrocks improves predictive models of source rock quality, organic matter transformation, and hydrocarbon generation potential. Furthermore, the study contributes to the regional correlation of Maastrichtian source rocks, facilitating a more comprehensive framework for geochemical cyclicity and compositional variability across the Eastern Mediterranean. Geological settings Jordan is located at the north-western margin of the Arabian plate, which is separated from the African plate along a left lateral transform fault system and includes areas of Aqaba, the Dead Sea, and the Jordan Rift Valley (Figures 1a and b). During the late Cretaceous to the Eocene, Jordan was located on a shallow shelf at the southern margin of the Neo-Tethys Ocean and is represented by two major lithostratigraphic groups, namely, the Ajlun Group and the Belqa Group 29 (Figure 1b). The Ajlun Group is late Albian to early Coniacian in age and comprises lithofacies that are mainly associated with fluvial siliciclastic and marine carbonates and evaporites 29 . The Belqa group was deposited during the late Coniacian to early Lutetian time and mostly consists of sandstones, limestones, chalk marl, cherts, phosphorites, coquina limestones, and bituminous marls 26,30,31 . The Belqa Group comprises the following six formations, from bottom to top they are: Wadi Umm Ghudran (WG), Amman Silicified Limestone (ASL), Al Hisa Phosphorite (AHP), Muwaqqar Chalk Marl (MCM), Umm Rijam Chert (URC), and Wadi Shallala Chalk (WSC). The focus of the present study is on the Maastrichtian-aged Muwaqqar Chalk Marl (MCM) Formation. The MCM Formation is subdivided into three main units. The lower unit of MCM is composed of organic-rich carbonate mudstones, which are also referred as the JSR interval. This organic-rich interval characterizes intense surface water marine algal productivity and deposition under reducing conditions, resulting in significant organic matter preservation 32,33 . The total organic carbon (TOC) content of this unit can reach up to 25 wt.% in places 12,19,34 . The middle unit of the MCM consists of chalk and bituminous marl. The upper unit of the MCM Formation consists of light yellowish chalk intercalated with black chert beds 27,30 . The JSR occurs in the shallow subsurface in central Jordan and outcrops in several surrounding locations (Figure 1). These source rocks extend beneath approximately 60% of Jordanian territory and rank among the richest organic-rich deposits worldwide 35 . Despite the immature nature of JSR, it provides a unique opportunity to examine vertical and lateral compositional heterogeneities within an anoxic depositional system, offering critical insights into source rock development and geochemical variability during deposition. Samples and Methods To investigate the organic and inorganic geochemical composition and variability of the JSR, a vertical well was drilled in the Al-Lajjun region of central Jordan (Figure 1b). The well was drilled by MinXperts drilling company in Jordan, funded by King Abdullah University of Science and Technology (KAUST), where the recovered core was transported to KAUST with the support of the Ministry of Energy and Mineral Resources (MEMR), Jordan. The total depth of the well is 72 m, with a top 24-m cutting interval and an underlying 48-m core interval. Bulk organic and inorganic geochemical analyses were performed using Spectral Gamma Ray (SGR), Rock-Eval pyrolysis, X-ray diffraction (XRD), X-ray fluorescence (XRF), and Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) to identify compositions and distributions within the section. Detailed petrographic analyses using thin sections and Scanning Electron Microscopy (SEM) combined with Energy Dispersive X-ray analysis (EDX) were conducted to understand the variation in lithotypes and to observe the distribution of organic matter in association with the inorganic geochemical components of the section on the micro to nanoscale. The core profile, the analytical methods, and selected sample locations in the drilled well are shown in Figure 2. The methodology of each of these techniques is discussed in detail below Spectral gamma ray (SGR) data The SGR data was collected at KAUST from the entire core interval (from 24m to 71m) at 0.25-m intervals, using an RS-230 gamma-ray spectrometer (Radiation Solution). The detector was calibrated to ensure a proportional relationship between the measured counts and the concentrations of potassium (K; %), uranium (U; ppm), and thorium (Th; ppm), which were converted by the spectrometer into a TGR count signal (SGR-TC). The SGR-TC signal values were subsequently converted to API units using the empirical formula GR (API) = 4Th (ppm) + 8U (ppm) + 16K (%) 37 . Bulk organic geochemical analyses The bulk organic geochemical analysis on the cored well was performed at KAUST with 1.5-m sample intervals for the initial 20-m depth and at 0.5-m intervals for the remaining core (total 117 samples), using a Rock-Eval 7S instrument (Vinci Technologies). The experimental approach employed established procedures 38,39 .The sample locations are shown in Figure 2. To ensure the reliability and precision of the results, an IFPEN-160K standard sample was included after every 10 samples, with a duplicate sample taken every 20 samples. The key results obtained from RockEval 7S include Total Organic Content (TOC in wt.%), S1 (free hydrocarbons in mg/grock), S2 (thermally cracked hydrocarbons in mg/grock), S3 (CO2 released in mg/grock), Tmax (thermal maturity parameter in °C), HI (Hydrogen index), OI (Oxygen Index), PI (Production Index), TSorg (Total Organic Sulfur in wt.%), TSinorg (Total Inorganic Sulfur in wt.%), Total S (Total sulfur in wt.%). Inorganic geochemical (XRD, XRF, and ICP-OES) analysis Based on the bulk organic geochemical results, a subset of 28 samples was selected to effectively capture the mineralogical and elemental composition of the section (for sample location, see Figure 2). To analyze the mineralogical composition, a D8 Advance P-XRD instrument (Bruker Technologies) equipped with Cu-Kα radiation (λ = 1.54Å) and a LynxEye detector was used at a current of 40 mA and a voltage 40 kV in the Imaging and Characterization Core Laboratory at KAUST. Homogenized powdered samples with a grain size ranging from 1 to 10 μm were used to identify the primary mineralogical components in the selected samples. The obtained diffractograms were scanned within the 2θ angular range of 5–70°, with a step size of 0.10’’. The diffraction patterns were identified by matching them with the International Centre for Diffraction Data (ICDD) PDF library. For the major and minor elemental analyses, a wavelength-dispersive S8 TIGER Series 2 XRF spectrometer (Bruker Technologies) was used in the Imaging and Characterization Core Laboratory at KAUST. To enhance the accuracy, the powdered samples were compacted into 34-mm diameter pellets before placing them in the sample holder for analysis. After the analysis, the in-build XRF software was used to calculate the concentation of all the major and minor elements. For trace element analyses, an ICP-OES equipment (Agilent Technologies) was used at KAUST. Prior to analysis, the samples were digested in HNO 3 :HCl (3:1) for the carbonate-rich samples, and HNO 3 :HF (3:0.5) for the silica-rich samples, using Ultrawave-2 (UltraWave) equipment. After complete digestion, the samples were injected into an ICP-OES instrument along with the standards for estimating the trace metals concentration. Petrographic analysis For the petrographic analysis, plug samples were taken for thin-section microscopy, and plug samples for SEM-EDX spectroscopy. These samples were selected to represent the significant variations in source rock composition and organic matter distribution in the JSR. The sample locations for the thin section and SEM are shown in Figure 2. Thin sections were studied under a LEICA DM 750P polarizing light microscope at 2.5x, 4x, and 10x magnification. The petrographic description includes different types of grains, matrix, lamination, interparticle and intraparticle porosity, fractures, and diagenetic features. Based on the macroscale and microscale observations, the thin sections were then classified using the guidelines proposed in the literature 41,42 . For SEM analysis, the samples were first polished and coated with titanium to enhance the resolution and quality of the images. The samples were then analyzed via FE-SEM (TESCAN) along with EDS (OXFORD) at KAUST) to obtain high-resolution secondary electron (SE) and backscattered electron (BSE) images and elemental compositions of the samples at various resolutions. Results and interpretation Spectral Gamma ray distribution (SGR) The SGR profile is presented, along with the concentration profiles of U, Th, and K, in Figure 3, whereas the overall data obtained is shown in Supplementary table 1. The SGR profile is closely tracked by the U concentration, thus suggesting a strong influence of this element on the SGR variation, with Th and K having little or no role (Figure 3b). A prominent feature of the profile is the very high SGR response at the bottom of the core, specifically between 63 and 72 m depth, which is also reflected in the higher concentration of U. This abnormally high SGR signal is attributed to the presence of phosphorites (which are known to have strong affinity for U) associated with the underlying AHP Formation 43 . The overlying lower SGR response (from 21 to 63 m depth) corresponds to the JSR interval present in the lower part of the MCM Formation and shows significant variability ranging from 20 to 90 counts. Bulk organic geochemistry; TOC, TS, and kerogen type The bulk organic geochemical distribution for the studied well is presented in Fig. 4, with detailed RockEval data provided in Supplementary table 2. The TOC and associated bulk geochemical properties vary significantly throughout the core. Within the JSR interval (from 24 to 63 m), the TOC values range from 2 wt.% to 22 wt.%, with an average of 14 wt.%. In contrast, the AHP interval (63 to 71 m), shows relatively lower TOC values, ranging from 0.1 wt.% to 14 wt.%, with an average of 6 wt.%. Similarly, the hydrogen index (HI) also varies between the two intervals. The JSR consistently exhibits high HI values with low variability (822–894 mgHC/gTOC), averaging 843 mgHC/gTOC. In comparison, the AHP interval displays relatively lower HI values with greater variability (515 – 835 mgHC/gTOC), averaging 740 mgHC/gTOC. The oxygen index (OI) further distinguishes the two intervals, with the JSR exhibiting low OI values (14–57 mgCO 2 /gTOC) with an average of 26 mgCO 2 /gTOC, whereas the AHP shows a broader OI range (13 – 298 mgCO 2 /gTOC) with an average of 50 mgCO 2 /gTOC. These geochemical trends indicate the presence of high-quality and well-preserved organic matter in JSR, whereas the AHP, despite containing good-quality organic matter, exhibits a lower preservation and higher oxidation compared to AHP, where the organic matter is of good quality but more oxidized. The TOC, S2, and sulfur distributions in the drilled well are remarkably similar, as shown in Figure 5, thus suggesting a strong covariation of organic content, quality, and sulfur content within the JSR. The distribution of these parameters also reveals the presence of three distinctive cycles in the JSR, which are referred to as Cycles 1–3 (Fig. 4). These cycles also show distinct patterns in the SGR but not as prominent as in other geochemical parameters across the JSR interval. Cycle 1 (Cy-1) spans from 49 to 62.5 m depth and has TOC and TS values of 10.55–22.19% and 2.74–4.95%, respectively. Cycle 2 (Cy-2) covers the depth interval of 37–49 m, with TOC and TS ranges of 6.32–19.92% and 1.67–4.98%, respectively. Cycle 3 (Cy-3) extends from 24 to 37 m depth, with TOC and TS ranges of 2.38–17.32% and 0.67–4.35%, respectively. To gain deeper insight into the organic geochemical characteristics of the JSR and AHP intervals in the core, both units were classified using a widely accepted petroleum source rock classification system 44 . The JSR interval is characterized as an excellent source rock due to its consistently high TOC and HI values (Figure 5a). Although the AHP interval exhibits slightly lower TOC and HI values compared to JSR, it still qualifies as a good-excellent source rock, indicating its potential for hydrocarbon generation. In terms of thermal maturity, both the JSR and AHP intervals display low Tmax temperatures (<415 °C) and low production index (PI) values (<0.05), confirming that these intervals are thermally immature (Figure 5b). The modified van Krevelen diagram (Figure 5c) further classifies both JSR and AHP as mixed Type I–II kerogens (highly oil prone), with a strong potential for liquid hydrocarbon generation upon maturation. Additionally, the calculated Sulfur Index (SI) places both intervals within the Type IIS kerogen category (Figure 5d), suggesting hydrocarbon generation at lower thermal maturity levels compared to typical Type II or Type I kerogens. Interestingly, despite variations in TOC and HI values between the JSR and AHP, the organic matter type and thermal maturity remain relatively uniform. This consistency suggests that the observed geochemical cycles are not driven by changes in organic matter type, quality, or maturation, but rather by depositional conditions controlling their distribution and preservation. Mineralogical characterization The mineralogical composition of the JSR interval, as determined through XRD analysis, is predominantly carbonate-rich, with calcite as the primary mineral and occasional occurrences of dolomite. Minor amounts of clay minerals and varying quartz content are also present (Figure 6). The calcite content varies significantly, ranging from 20% to 80%, while silicates, the second most abundant mineral group, constitute 5% to 20%, with localized zones reaching up to 56%. These silicate-rich zones are primarily composed of quartz and opal cristobalite-tridymite (CT). The clay content is relatively low, fluctuating between 1% and 6%, with kaolinite being the dominant clay mineral. The phosphate mineral fluorapatite varies considerably, ranging between 2% and 12%. Other minor minerals include gypsum (1–10%), pyrite (1–10%), and sphalerite (1–5%). A comprehensive dataset from the XRD analysis is provided in Supplementary table 3. The mineralogical variability across the previously identified geochemical cycles, also reveals distinct patterns. Cycles 1 and 3 are characterized by dominant carbonate mineralogy, averaging around 70%, with relatively low silicate content (10–20%) and minor but variable clay concentrations (<5%). An anomaly at 58.5 m depth is observed, marked by a slight increase in quartz and clay content and a corresponding decrease in calcite concentrations, coinciding with an abrupt drop in TOC. This shift likely represents a short-lived detrital influx event, potentially linked to episodic sedimentation changes. In contrast, Cycle 2 exhibits a pronounced increase in silicate content (6–56%), primarily due to the presence of opal CT, while carbonate concentrations vary between 20% and 60% and clay remains relatively low (<4%). The presence of opal CT suggests the recrystallization of biogenic silica (originally in the form of amorphous opal, or opal A) derived from silica-secreting microorganisms, such as diatoms and radiolarians 43,45 . Major and minor elemental characterization The major and minor elemental composition of the studied section, as determined by XRF analysis, aligns well with the observed mineralogical variations. The complete dataset detailing the elemental composition is provided in Supplementary table 4, while ternary plots (Figure 7) illustrate the key geochemical trends and variability. The Al₂O₃-CaO-SiO₂ ternary plot (Figure 7a) reveals a system dominated by high CaO concentrations, reflecting the prevalence of carbonate minerals. However, variations in Al₂O₃ and SiO₂ suggest contributions from clays and quartz. Within the JSR interval, Cycles 3 and most of Cycle 1 follow a mixing trend between carbonate and aluminosilicate detrital inputs. In contrast, Cycle 2 exhibits anomalously high SiO₂, corresponding to the presence of biogenic silica. The CaO-SiO₂-P₂O₅ ternary plot (Figure 7b) highlights the significant presence of phosphate (up to 10%) in all samples, with a particularly higher concentration in the AHP interval. This enrichment suggests enhanced phosphogenesis, likely influenced by episodic upwelling conditions, high biological productivity, and organic matter degradation during deposition 46 . Trace elemental characterization The trace elemental data acquired for compositional analysis also serve as a proxy for identifying the prominent environmental and depositional conditions during organic matter accumulation. The overall dataset obtained is provided in Supplementary table 5. Among these, trace elements such as Ni, Cu, Zn, Cr, Cd, Mo, U, and V are often associated with higher TOC and TS sediments and are thought to be primarily controlled by both reduction-oxidation (REDOX) conditions and sequestration by organic matter and sulfur to varying degrees 5,47-49 . Ni and Cu (and to a lesser degree Zn and Cr) often show strong correlations with TOC and TS and are commonly used as proxies for organic matter input and productivity in sediments 5,45 . Meanwhile, U and V are generally accepted as REDOX indicators and are found to be enriched in low-oxygen (dysoxic and anoxic) settings, while Mo and Cd are also REDOX indicators but are often found to be enriched in sulfidic (euxinic) settings where there is free H 2 S in the water column as well as in sediment pore spaces 50,51 . The enrichment factors (EFs) of selected elements in the JSR cycles and AHP Formation, as compared to those of modern upwelling systems, Sapropels, and Cretaceous black shales are shown in Figure 8. The EF for each metal is calculated by normalizing the total metal to Al and then comparing the metal/Al ratio to that of the average shale to account for the contributions from detrital input 5,51 . Both the JSR cycles and the AHP are anomalously enriched in P, Zn, Cr, Mo, U, and Cd, and moderately enriched in Ni, Cu, and V. To further assess these key paleoenvironmental conditions, the elemental proxies as EFs are divided into the following 3 categories: (i) organic matter dilution, (ii) paleo-productivity, and (iii) paleo-redox conditions. Detrital influx/dilution To account for the influence of detrital sediment input, elemental data are commonly normalized to Si, Al, and Ti due to their association with the detrital quartz and aluminosilicate fraction of sediments 5,53-55 .However, Si can also be enriched through the input from siliceous tests of marine algae such as diatoms and radiolarians, thus resulting in an excess non-detrital (biogenic) Si component. This excess is validated by the cross-plots of Ti vs. Al and Ti vs Si in Figure 9, which show a strong positive correlation between Ti and Al, but a poorer negative correlation, along with significant deviations from the regression line, for Ti and Si. Thus, both Al and Ti indicate a primary detrital aluminosilicate origin and are valid elements for normalization to derive geochemical proxies. The variations in major, minor, and trace elements (as wt.% or ppm and as normalized to Al) for the JSR cycles are shown in Figure 10. Here, the JSR interval shows an overall low Al content (2–8%), with elevated values at the bottom and top of the section. This may suggest a large scale sea-level or climate change, leading to variations in the overall detrital influx into the basin. The detrital dilution is not the only influence on organic matter in sediments. The inputs of biogenic sediments (both siliceous and carbonate) during periods of high productivity can also lead to dilution, thus resulting in lower overall organic matter concentrations 56 . The relationship between the TOC and inorganic components in the JSR interval can be seen in Figure 11. The main non-carbonate detrital contribution to the sediment is in the form of clays and detrital quartz, which are shown using Al and Si as proxies (Figure 11a and b). The combined %Si+Al fraction plotted against %Ca indicates that the dilution of carbonates in the JSR (especially in Cycles 1 and 3) by detrital minerals mostly ranges from around 10% to 20%. Cycle 2 indicates a significantly lower overall carbonate content, and the dilution is primarily attributed to the addition of biogenic silica to the %Si+Al fraction. The influence of the inorganic components on the organic matter fraction in the JSR interval is shown in the cross-plots between TOC vs. Al and TOC vs. Ca and Si normalized to Al-content in Figure 11c and d. Here, Cycle 1 exhibits a strong positive correlation between Ca/Al and TOC, but a poor one with Si/Al. This suggests a coupled increase in both carbonate productivity and organic matter concentration, along with a negative effect of siliciclastic dilution on the latter. By contrast, Cycles 2 and 3 show poor correlations between Ca/Al and Si/Al and TOC, thus suggesting that dilution by a siliciclastic detrital fraction cannot simply explain the variation in the amount of organic matter in these cycles. Paleoproductivity The high amounts of organic carbon (10–20%) and its consistently high HI values (800–900 mg HC/gTOC) are strong evidence of high marine algal productivity in the JSR section. In addition, the TOC is closely associated with trace metals such as Ni, Cu, and Zn, which are commonly used as geochemical proxies for productivity 57-59 . It is postulated to be taken up by marine algae and subsequently transported and incorporated into sediments where the organic matter is preserved due to low oxygen conditions 50,60 . The JSR interval in Jordan is reported to contain high trace element concentrations 19,45,51 , as corroborated by this study. The concentration profiles (as ppm metals) show a strong correspondence with the paleo-productivity proxies and the TOC profile (Figure 10). The trace elements (especially Ni and Cu) exhibit a high degree of correlation with TOC, for the whole section and for each cycle (Figure 12). The absolute concentrations of Ni, Cu, and Zn are all above typical background shale values, and the strong correlation with the TOC suggests that the bulk of these metals are closely associated with the organic fraction. Small and consistent differences between the cycles suggest that other factors, such as redox or availability of S, as well as varied clastic input, may also have played a minor role. The presence of significant amounts of P has been previously noted for the JSR on a regional scale. It is indicative of high productivity driven by upwelling in the southern marine platform of the Tethyan margin, and specifically in the Jordan region 19,29 . While the AHP Formation is noted for its exceptionally high P contents and is designated as a source for phosphorite mining, all the three identified cycles of the JSR interval are also very rich in this element (~2–5%), with EF values >100, and C org /P ratios (~5–23). The P cycle in such settings is complex. Bioavailable P is taken up by primary producers and transported to the sediment-water interface if the organic matter is not oxidized. However, its transport and release from productive surface waters to the sediment-water interface is also controlled by the presence of Mn and Fe oxyhydroxides, which are strongly affected by redox conditions 60,61 . The elevated EFs and low Corg/P for the JSR in a highly reducing setting is surprising, as anoxia generally promotes dissolution of P-transporting phases and effectively remobilizes P into the water column. Algeo and Ingall 62 have demonstrated that detrital P is almost always a very minor component of marine sediments, hence the bulk of the P found in the JSR interval is likely to be authigenic. Possible explanations for the high P contents (especially relative to the TOC) are precipitation as authigenic mineral phases (fluorapatite, authigenic Fe-phosphates) and preservation as fecal pellets and fishbone material. The latter are found in abundance in the AHP Formation and in the JSR observed in SEM images. Consequently, the high amount of P in the JSR section and its mimicking of the TOC profile can be interpreted as indicative of a high productivity setting. Paleoredox: Molybdenum (Mo), vanadium (V), and uranium (U) serve as established geochemical proxies for reconstructing bottom-water redox conditions during organic matter preservation 5,57,59 . The distribution profiles of these elements (as metal concentrations) and its normalization to Al content are shown in Figure 10. Here, all three elements are highly enriched in the JSR interval compared to normal background average shale values (Post-Archean Australian Shale-PAAS) 52 . In Cycle 1, these proxies exhibit a significant decrease at approximately 58.5 m depth, which coincides with a similar decrease in other geochemical proxies, potentially reflecting a short-lived detrital event. Apart from this episode, highly reducing conditions appear to persist overall in Cycles 1 and 2, with Cycle 2 showing significant enrichments of Mo, along with V and U. Such pronounced Mo enrichment has been associated with highly sulfidic (euxinic) conditions 50,63-65 . Based on the threshold values proposed by Scott and Lyons 64 and the EF model proposed by Algeo and Tribovillard 66 , Cycles 1 and 2 have high Mo concentrations (50–180 ppm), thus suggesting euxinic to periodic euxinic conditions in the water column (Figure 13). In contrast, Cycle 3 has relatively lower Mo concentrations (23–60 ppm) and is more likely to have had anoxia to periodic euxinia in the water column during deposition of the organic matter. Thin section petrography Thin section (TS) sections were produced from plugs taken from different depth intervals to showcase significant petrographic heterogeneities starting from the AHP Formation and across the JSR interval, and were numbered consecutively from bottom to top of the section. Thus, TS-01 was taken from a depth of 64.5 m and marks the transition between the underlying AHP Formation and the JSR interval. Based on Dunham's classification 41 , this thin section can be categorized as phosphatic packstone to grainstone due to its distinctive texture, which consists mainly of phosphatic peloids, phosphatic ooid grains, fish fragments, foraminifera, and lithoclasts (Figure 14a). Calcite and apatite are the most common minerals, with poorly sorted grains embedded in a brownish, organic-rich matrix. This thin section shows strong bioturbation is significantly bioturbated and has an estimated TOC of 6.5 wt.%. Thin sections TS-02 and TS-03 were obtained from depths of 55.5 and 50.0 m, having TOC of 18.8 and 19.5 wt.%, respectively (Figure 14b-c). Both thin sections can be classified as organic-rich carbonate mudstones and represent Cycle 1 of the JSR interval. These facies are characterized by a light to dark brown mud matrix containing a relatively low grain fraction (5–15%). The grain assemblage is dominated by well-preserved foraminifera shells, with occasional occurrences of phosphatized bone fragments (up to 5 mm) and bivalve fragments. The dark brown organic matter primarily fills in the fossil chambers, but is also observed as part of the matrix. Notably, no visible porosity or microfractures are observed in either of these two thin sections. Thin sections TS-04, TS-05, and TS-06 correspond to depths of 46, 43, and 39.5 m, with TOC values ranging from 12.1 wt.% to 17.6 wt.% respectively, and represent Cycle 2 of the JSR interval (Figure 14d–f). These thin sections are classified as silica-rich mudstones to wackestones. This categorization reflects a significantly higher grain density (up to 50%) and dominant silicate mineralogy (particularly intragranular Opal CT cement). The primary grain components are well-preserved planktonic and benthic foraminifera with some bivalve fragments. Notably, the chambers of these biogenic grains are partially filled with cement (either quartz or calcite). Organic matter appears as brownish-hued elliptical/lenticular-shaped lenses concentrated within the matrix but also partially or entirely fills the fossil chambers. Similarly to previous TS-01, -02, and -03, no visible porosity or fractures are observed in TS-04, TS-05, and TS-06. Thin sections TS-07, TS-08, and TS-09 were retrieved from depths of 35, 30, and 25.5 m, with TOC values of 12, 14.7, and 9.2 wt.%, respectively, representing Cycle 3 of the JSR interval (Figure 14g–i). These thin sections are classified as “Foraminifera wackestone to packstone” and exhibit relatively lower TOC values compared to cycles 1 & 2 of the JSR section. This classification reflects a higher grain density (exceeding 50%), with foraminifera fossils being the dominant grain component. Occasional occurrences of other biogenic grains, such as bivalve fragments and fish remains, are also observed. The biogenic grains are primarily filled with calcite cement. In contrast to cycles 1 & 2, the organic matter distribution is found mostly concentrated in the matrix with minimal occurrences inside the fossil chambers. Scanning electron microscopy with energy dispersive X-ray (SEM-EDX) analysis To further highlight the compositional and textural heterogeneity and to understand the distribution of organic matter, a selected sample from each cycle was subjected to a detailed SEM-EDX analysis. The results obtained for a sample from Cycle 1 (depth = 53 m), representing an organic-rich zone with a 19% TOC content, are presented in Figure 15. This SEM sample exhibits a heterogeneous composition with distinct biogenic grains and matrix (Figure 15a and b). The biogenic grains are mainly composed of calcite and phosphate minerals and exhibit well-preserved original structures with only occasional fractures (Figure 15a). The carbonate-dominated grains also display well-preserved microporosity, which is mostly filled with organic matter. The latter is discernible by a darker grey hue in Figure 15c and characterized by elevated C and S contents in the EDX results (Figure 15e). The high-resolution image in Figure 15d also reveals the presence of organic matter in the matrix, showing an amorphous structure surrounding the grain particles. Besides this, the matrix is dominated by very fine Si-rich and Ca-rich particles (Figure 15d). Pyrite is also found in pore spaces alongside the organic matter, appearing as small framboidal grains (Figure 15c,d). Pyrite formation is primarily driven by microbial sulfate reduction (MSR), where sulfate-reducing bacteria convert sulfate into hydrogen sulfide (H₂S), which then reacts with iron to form pyrite (FeS₂) 67 . The SEM-EDX results for a sample from Cycle 2 (taken from a depth of 43 m) are shown in Figure 16. This also corresponds to an organic-rich interval with an 18% TOC content. The biogenic grain type and matrix texture of this sample resembles that of Cycle 1 but with a significant increase in the Si content. This silica enrichment manifests primarily as cement, which is present in the biogenic fossil chambers but also in the surrounding matrix (Figure 16a). The silica cement is interpreted to be of biogenic origin through the recrystallization of amorphous opaline-silica originating from diatoms and radiolarians 68 . The biogenic grains are primarily composed of calcite and apatite, with occasional dolomite occurrences and small nodular/framboidal pyrite (Figure 16a,b). Notably, the organic matter present within the fossil chamber co-occurs with the opal CT cement (Figure 16a,b), however, it is also present in the matrix (Figure 16b-d). Furthermore, a high concentration of Zinc sulfide (ZnS) due to elevated Zn and S concentration, is observed alongside organic matter in the fossil chamber (Figure 16a,b). The presence of ZnS within the fossil chamber represents highly reducing/euxinic bottom water conditions, where hydrogen sulfide (H₂S), in the absence of iron (Fe), reacts with dissolved Zn²⁺, leading to ZnS precipitation 69,70 . The presence of some clay particles is also observed through elevated Al and K signatures in the SEM-EDX results (Figure 16b,d,e). The SEM-EDX analysis of a sample from Cycle 3 is presented in Figure 17. This sample was retrieved from a depth of 33 m and exhibits a lower TOC content (9%) compared to Cycles 1 and 2. Hence, this sample provides an opportunity to examine the effects of varying organic richness on the organic matter distribution. As with the Cycle 1 sample, the biogenic grains of the Cycle 3 sample are primarily composed of calcite and apatite, albeit with a higher grain density and a greater number of broken shells/fragments (Figure 17a). Notably, the intraparticle porosity (fossil chambers) that was filled with organic matter in Cycles 1 and 2 is either empty or filled with calcite/dolomite cement in Cycle 3. (Figure 17a,b). The dolomite mostly occurs as a diagenetic alteration of the calcite grains with a similar grain texture to that of calcite; however, it is also observed as individual rhombohedral crystal grains (Figure 17b,c). Alongside the dolomite, a higher clay content is revealed by the elevated Al, K, Si, and O concentrations (Figure 17b,d). The organic matter distribution in this sample is mostly concentrated in the matrix, surrounding the grain particles with an elliptical to sub-elliptical shape and filling in the interparticle pore spaces (Figure 17d). Discussion The geochemical and petrographic data from the Maastrichtian organic-rich carbonate source rocks of the MCM Formation in central Jordan reveal a complex depositional history characterized by cyclic variations in organic matter preservation, mineralogical composition, and redox conditions. These geochemical cycles reflect the dynamic interplay of climatic fluctuations, sea-level changes, and sedimentary processes, which collectively influenced the distribution and quality of organic matter. Key factors governing these geochemical variations, assess their implications for hydrocarbon generation potential, and explore their significance in a broader regional stratigraphic and paleoenvironmental context are discussed in detail. Depositional Setting Contrary to the common perception of relatively stagnant depositional conditions in deep pelagic settings, the JSR interval is proposed to have been deposited under more dynamic conditions in a shallow shelf environment. This depositional setting was likely influenced by a combination of climatic fluctuations, sea-level changes, and localized sedimentary dynamics that created a highly variable geochemical environment, resulting in extreme geochemical signatures 45 , 71 (Fig. 10 ). The geochemical proxies in the JSR reflecting such paleodepositional conditions and compared with source rocks of different origins are shown in Fig. 18 . The paleoenvironmental reconstitution, supported by elemental geochemical data, suggests that JSR deposition occurred in a highly bio-productive system driven by sustained nutrient upwelling along the southern margin of the Neo-Tethys. This upwelling facilitated high primary productivity, which combined with restricted bottom-water circulation, contributed to organic-rich sediment accumulation under anoxic to euxinic conditions. Similar examples of source rocks with variable but relatively high organic matter and high trace metal enrichments include the siliciclastic Paleozoic black shales 72 , the siliciclastic Eocene black shale succession from the central Arctic Lomonosov Ridge 73 , and the carbonate Toarcian black shales of the Posidonia Shale Formation in the Dutch Central Graben 74 . These formations share key geochemical and mineralogical proxies indicative of deposition under relatively high-energy, nutrient-rich shallow marine conditions. Age, duration, and characteristics of depositional cycles The identified JSR cycles can be dated by nannofossil biozones (UC 16b, 17, 18, and 19) 40 (Fig. 4 ). The nannofossil biostratigraphy suggests deposition between 72.2 and 68.8 Ma, with cycle durations of 0.9 to 1.3 Ma and an overall rate of deposition of 12m/Ma 40 . The age dating classifies these cycles as third-order depositional sequences, nested within a second-order transgressive phase 25 , 56 , 75 . Each cycle reflects unique variations in organic matter enrichment, mineral assemblages, and depositional dynamics, driven by fluctuations in primary productivity, redox conditions, and sediment supply mechanisms (Fig. 19 ). Cycle 1 , spanning 1.13 Ma with a thickness of 13.5 m and a sedimentation rate of 13.3 m/Ma, is characterized by high carbonate content and very high TOC levels, classifying it as an organic-rich carbonate mudstone facies. The depositional conditions during this cycle remained relatively stable, with sustained high organic matter productivity and predominantly euxinic bottom waters. A short-lived detrital input event is observed at 58.5 m depth (Figs. 6 and 10 ), marked by a localized decrease in TOC and an increase in clay content (Fig. 6 ). The exact cause of this event is uncertain, but potential triggers include a period of storm surges, nearby volcanism, or seismic activity. A unique feature of this cycle is the presence of organic matter/solid bitumen within the fossil chambers (Fig. 15 ). This suggests pre-expulsion bitumen migration at relatively low temperature, commonly associated with Type-IIS kerogens 13 . In these rocks, the sulfur-rich organic matter behaves as a semi-mobile phase that can migrate over short distances inside source rocks prior to the incipient oil generation stage 76 . Cycle 2 spans 1.31 million years, with a thickness of 11.5 m and a sedimentation rate of 9.2 m/Ma. This cycle corresponds to silica-rich mudstone to wackestone facies. A significant compositional shift is observed in this cycle marked by an increase in Si-content and a corresponding decrease in Ca-content (Figs. 6 and 10 ). This shift reflects a change in the dominant biota, where silica-secreting organisms, such as diatoms, radiolarians, and sponges produced amorphous silica (Opal-A), which later transformed into Opal-CT during diagenesis 77 , 78 . The shift in biota is interpreted to represent an increased nutrient supply favouring the proliferation of siliceous organisms over carbonate-secreting ones 54 , 79 . Such biogenic siliceous oozes typically accumulate in nutrient-rich upwelling regions, similar to those found in the equatorial and polar belts, as well as coastal upwelling zones like the North Pacific and Antarctic 80 . All these regions feature high biogenic productivity and reducing bottom-water conditions. Corresponding elevated concentrations of productivity-related trace metals (Ni, Cu, and Zn), and paleoredox trace metals (i.e. Mo, V and U) are observed (Fig. 10 ) in Cycle 2. We interpret these changes in upwelling and nutrient supply to be driven by an increase in the vigor of long-shore currents due to a sustained 1 million year-long change in climate and wind patterns. The co-occurrence of Opal CT and organic matter inside the fossil chambers is another unique feature of this cycle (Fig. 16 ). This indicates a pre-oil bitumen migration inside the fossil chamber after the dissolution and re-crystallization of opal-A to opal-CT, leading to the simultaneous entrapment of both organic and inorganic components within the fossil chambers. Cycle 3 , spanning 0.91 Ma, has a thickness of 14.5 m and a sedimentation rate of 14.8 m/Ma. This cycle marks a return to carbonate-dominated deposition, with a decline in siliceous biota and a corresponding re-emergence of calcium-secreting organisms. Lower concentrations of productivity and redox proxies (Ni, Cu, Zn, Mo, V, U) corroborate a reduced paleo-productivity and/or organic matter preservation for this cycle (Fig. 10 ). In this cycle the increase in Al and Ti content indicates a higher detrital input, mostly in the form of clays. This, in combination with a higher density of carbonate grains – mainly benthic foraminifera – suggests an increase in currents and oxygenation and relatively lower TOC preservation compared to the other JSR cycles (Figs. 6 and 10 ). Unlike the previous cycles, the organic matter in this cycle is mostly dispersed within the matrix, with minimal occurrence inside fossil chambers (Figs. 14 and 17 ). Instead, these chambers are predominantly filled with calcite cement, suggesting that early carbonate cementation occurred before the organic matter reached pre-bitumen migration temperatures. This could also be attributed to the relatively lower organic sulfur content in this cycle, which may have reduced an early mobility of organic matter within the rock matrix. Regional correlation and geochemical cyclicity Overall, the JSR exhibits geochemical characteristics like other late Cretaceous source rocks in the eastern Mediterranean region, with its composition primarily dominated by carbonate minerals, particularly calcite 20 , 21 , 24 , 28 , 81 . A key new observation in the JSR is the presence of three distinct geochemical cycles, each characterized by unique variations in organic and inorganic geochemical composition (Fig. 4 , 6 , 10 ). The detailed characterization of the JSR geochemical cycles presents a unique opportunity to develop a high-resolution regional stratigraphic model for Eastern Mediterranean source rocks. Encouraging support for such an effort is provided by the recognition of TOC cycles, which have been documented by Meilijson et al. 23 in Maastrichtian organic-rich strata of the Shefela Basin. A regional correlation would significantly enhance the understanding of the late Cretaceous Eastern Mediterranean shelf system, paleo-oceanographic conditions at the southern Tethys margin, source rock distribution in MENA, and hydrocarbon potential across the region. Impact of compositional heterogeneity in unconventional reservoirs Understanding the shifts in organic and inorganic geochemical composition is crucial for evaluating the petroleum potential of source rocks, as it directly influences their mechanical, thermal, and geochemical properties 34 . The cyclic alternation between carbonate- and silica-rich intervals, as observed in the JSR, has significant implications both for conventional and unconventional resource assessment. These variations can indicate preferential reservoir zones ("sweet spots"), guiding well placement and completion strategies. For instance, silica-rich intervals, particularly those cemented by Opal-CT, are generally more brittle than carbonate-cemented equivalents, enhancing the intervals disposition for hydraulic fracturing 82 . In addition to its mechanical effects, biogenic silica also alters the thermal properties of the source rock 34 . Compared to carbonate-rich lithologies, silica-rich intervals have higher thermal conductivity, leading to earlier hydrocarbon generation and potential of expulsion via maturation-caused natural fracture systems 34 . Such information is critical for identifying migration pathways and refining basin modeling predictions. Moreover, understanding the spatial and stratigraphic distribution of such cycles enables improved characterization of unconventional reservoirs, optimizing stimulation techniques and maximizing hydrocarbon recovery from organic-rich source rocks. Conclusion This study provides a detailed organic and inorganic geochemical and mineralogical characterization of the Maastrichtian carbonate source rocks in central Jordan, revealing significant compositional heterogeneities linked to depositional cyclicity. The JSR shares key geochemical and paleoenvironmental characteristics with other organic-rich deposits across the Eastern Mediterranean, with its deposition influenced by a major nutrient upwelling system along the southern Tethys margin during the Maastrichtian. The identification of three distinct geochemical cycles within the JSR highlights variations in organic matter distribution, mineralogical composition, and depositional conditions. Geochemical proxies suggest that shifts in nutrient upwelling intensity and redox conditions played a critical role in organic matter accumulation and preservation. Notably, the transition from carbonate-dominated to silica-dominated biota reflects climatic and oceanographic fluctuations, potentially driven by variations in wind patterns and upwelling dynamics, which altered nutrient availability. The presence of solid bitumen and Opal-CT within intra-particle fossil chambers provides direct evidence of early silica diagenesis and pre-oil bitumen migration under low thermal maturity conditions. This observation highlights the role of organic-sulfur-rich kerogen in early hydrocarbon mobilization and storage, with implications for unconventional hydrocarbon potential in similar systems. Additionally, variations in detrital influx, as indicated by Al and Ti enrichments in Cycle 3, suggest periodic shifts in terrestrial input that influenced organic matter dilution and preservation. The recognition of these high-order geochemical cycles in the JSR and their correlation with time-equivalent organic-rich intervals across the southern Tethys margin provide a refined stratigraphic framework for regional palaeoceanographic reconstruction. Integrating these geochemical insights into petroleum system models improves the predictive accuracy of exploration strategies for both conventional and unconventional hydrocarbon resources. In unconventional reservoirs, understanding compositional heterogeneities is critical for optimizing drilling strategies, refining completion techniques, and enhancing hydrocarbon recovery efficiency. Declarations Data Availability Statement: All data generated or analyzed during this study are included in this published article and its Supplementary Information files. Acknowledgments: The authors express their sincere gratitude to the Ministry of Energy and Mineral Resources (MEMR) and Karak International Oil (KIO), Jordan, for providing the core samples and granting the necessary approvals for this research. We also extend our appreciation to the members of KAUST-CARESS team for their valuable support in data analysis and manuscript revision. Additionally, we would like to thank Jihede Haj Messaoud (KAUST) for his help with the nannofossil and age-dating results. Finally, we thank the editor and anonymous reviewers for their constructive feedback and insightful comments, which have greatly enhanced the quality of this manuscript. Author contributions Muhammad Usman : Writing – original draft, Writing – review & editing, Visualization, Validation, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. Maria Ardila-Sanchez: Investigation, Methodology, Data curation, Validation. 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Contrasting molybdenum cycling and isotopic properties in euxinic versus non-euxinic sediments and sedimentary rocks: Refining the paleoproxies. Chem. Geol. 324–325 , 19–27. 10.1016/j.chemgeo.2012.05.012 (2012). Bennett, W. W. & Canfield, D. E. Redox-sensitive trace metals as paleoredox proxies: A review and analysis of data from modern sediments. Earth Sci. Rev. 204 , 103175–103175. 10.1016/j.earscirev.2020.103175 (2020). Algeo, T. J. & Tribovillard, N. Environmental analysis of paleoceanographic systems based on molybdenum-uranium covariation. Chem. Geol. 268 , 211–225. 10.1016/j.chemgeo.2009.09.001 (2009). Cai, C. et al. Enigmatic super-heavy pyrite formation: Novel mechanistic insights from the aftermath of the Sturtian Snowball Earth. Geochim. Cosmochim. Acta . 334 , 65–82. https://doi.org/10.1016/j.gca.2022.07.026 (2022). Huggett, J., Hooker, J. N. & Cartwright, J. Very early diagenesis in a calcareous, organic-rich mudrock from Jordan. Arab. J. 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PANGEA https://doi.org/10.1594/PANGAEA.786428 (2011). Brumsack, H. J. Inorganic geochemistry of the German ‘Posidonia Shale’: palaeoenvironmental consequences. Geol. Soc. Lond. Special Publications . 58 , 353–362. 10.1144/GSL.SP.1991.058.01.22 (1991). Farouk, S., Ahmad, F., Mousa, D. & Simmons, M. Sequence stratigraphic context and organic geochemistry of Palaeogene oil shales, Jordan. Mar. Pet. Geol. 77 , 1297–1308. 10.1016/j.marpetgeo.2016.08.022 (2016). Curiale, J. A. Origin of solid bitumens, with emphasis on biological marker results. Org. Geochem. 10 , 559–580. 10.1016/0146-6380(86)90054-9 (1986). Longfei, L. et al. Petroleum Geology & Experiment Early diagenesis characteristics of biogenic opal and its influence on porosity and pore network evolution of siliceous shale. (2020). Schieber, J., Krinsley, D. & Riciputi, L. Diagenetic origin quartz silt in mudstones and implications for silica cycling. Nature 406 , 981–985. 10.1038/35023143 (2000). Calvert, S. E. & Pedersen, T. F. in Developments in Marine Geology Vol. 1 (eds Claude Hillaire–Marcel & Anne De Vernal) 567–644Elsevier, (2007). Rothwell, R. G. in Reference Module in Earth Systems and Environmental Sciences (Elsevier, 2016). Marlow, B. L., Kendall, C. C. G. & Yose, L. A. Petroleum Syst. Tethyan Region doi: 10.1306/13431883M1063630 (2014). Iakusheva, R., Abu-Mahfouz, I., Usman, M., Finkbeiner, T. & Vahrenkamp, V. in 85th EAGE Annual Conference & Exhibition (including the Workshop Programme). 1–5 (European Association of Geoscientists & Engineers). Additional Declarations No competing interests reported. Supplementary Files R2SupplementryInformation.xlsx Cite Share Download PDF Status: Published Journal Publication published 08 May, 2025 Read the published version in Scientific Reports → Version 1 posted Editorial decision: Accepted 23 Apr, 2025 Reviews received at journal 20 Apr, 2025 Reviews received at journal 09 Apr, 2025 Reviewers agreed at journal 09 Apr, 2025 Reviewers agreed at journal 08 Apr, 2025 Reviewers invited by journal 08 Apr, 2025 Submission checks completed at journal 04 Apr, 2025 First submitted to journal 27 Mar, 2025 You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. 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Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-5449239","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":440574622,"identity":"48bcb1f0-8a3b-42d1-9a87-758348f6c00d","order_by":0,"name":"Muhammad 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Technology","correspondingAuthor":false,"prefix":"","firstName":"Maria","middleName":"","lastName":"Ardila-Sanchez","suffix":""},{"id":440574626,"identity":"8d4ae1a6-3f24-4e7f-a65c-20b1ddc45b0b","order_by":2,"name":"Erdem Idiz","email":"","orcid":"","institution":"University of Oxford","correspondingAuthor":false,"prefix":"","firstName":"Erdem","middleName":"","lastName":"Idiz","suffix":""},{"id":440574627,"identity":"9f657f65-d254-43f5-b309-ea803ece02b7","order_by":3,"name":"Israa Abu-Mahfouz","email":"","orcid":"","institution":"King Fahd University of Petroleum and Minerals","correspondingAuthor":false,"prefix":"","firstName":"Israa","middleName":"","lastName":"Abu-Mahfouz","suffix":""},{"id":440574628,"identity":"d7318369-ca4b-4cd6-9c6b-d9799523977d","order_by":4,"name":"Frans van Buchem","email":"","orcid":"","institution":"King Abdullah University of Science and Technology","correspondingAuthor":false,"prefix":"","firstName":"Frans","middleName":"van","lastName":"Buchem","suffix":""},{"id":440574629,"identity":"3cbc573a-5b04-40e6-806c-31d3d33ab35e","order_by":5,"name":"Volker Vahrenkamp","email":"","orcid":"","institution":"King Abdullah University of Science and Technology","correspondingAuthor":false,"prefix":"","firstName":"Volker","middleName":"","lastName":"Vahrenkamp","suffix":""}],"badges":[],"createdAt":"2024-11-13 19:38:08","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-5449239/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-5449239/v1","draftVersion":[],"editorialEvents":[{"content":"https://doi.org/10.1038/s41598-025-99832-w","type":"published","date":"2025-05-08T15:56:51+00:00"}],"editorialNote":"","failedWorkflow":false,"files":[{"id":80331930,"identity":"5c4a7ef1-c380-4ec8-b330-85d885ce30ad","added_by":"auto","created_at":"2025-04-10 15:25:11","extension":"png","order_by":1,"title":"Figure 1","display":"","copyAsset":false,"role":"figure","size":2503934,"visible":true,"origin":"","legend":"\u003cp\u003eMaps showing (a) the depositional facies of the Arabian plate during the late Cretaceous to early Paleogene\u003csup\u003e36\u003c/sup\u003e and (b) the present-day geological map of Jordan with the location of the drilled well (c) A lithostratigraphic column highlighting the JSR interval in the MCM \u003cem\u003eFormation\u003c/em\u003e of the Belqa group, which is present in the Al-Lajjun basin of central Jordan\u003csup\u003e29\u003c/sup\u003e\u003c/p\u003e","description":"","filename":"1.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/7e49972c217768317150e56d.png"},{"id":80331125,"identity":"99a4c730-0dc8-448b-aec1-6fca8df2dfbc","added_by":"auto","created_at":"2025-04-10 15:17:11","extension":"png","order_by":2,"title":"Figure 2","display":"","copyAsset":false,"role":"figure","size":1538636,"visible":true,"origin":"","legend":"\u003cp\u003eThe biostratigraphic age, spectral gamma-ray (SGR) profile, and sample locations used for the analysis of the JSR interval in the drilled well\u003csup\u003e40\u003c/sup\u003e\u003c/p\u003e","description":"","filename":"2.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/584de8e4f26b7b7c3e8bffdd.png"},{"id":80330731,"identity":"36cf5e11-adb6-4d43-8c3d-0b1c9d958305","added_by":"auto","created_at":"2025-04-10 15:09:11","extension":"png","order_by":3,"title":"Figure 3","display":"","copyAsset":false,"role":"figure","size":1029614,"visible":true,"origin":"","legend":"\u003cp\u003eThe SGR distribution, along with the individual U, Th, and K elemental distributions and their correlations with the total SGR response for the JSR interval in the drilled well\u003c/p\u003e","description":"","filename":"3.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/304c38717736b7aa70945bab.png"},{"id":80331929,"identity":"75162758-7758-4bc4-9800-5c315cac1be8","added_by":"auto","created_at":"2025-04-10 15:25:11","extension":"png","order_by":4,"title":"Figure 4","display":"","copyAsset":false,"role":"figure","size":1429049,"visible":true,"origin":"","legend":"\u003cp\u003eThe SGR and bulk organic geochemical property distributions of JSR highlightning the identified cyclicity with corresponding biostratigraphic ages\u003csup\u003e40\u003c/sup\u003e in the drilled well.\u003c/p\u003e","description":"","filename":"4.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/0492263dbae245e32e7a9e3f.png"},{"id":80330735,"identity":"4a7c3b43-d59e-4a87-9940-e7070a8a3e65","added_by":"auto","created_at":"2025-04-10 15:09:11","extension":"png","order_by":5,"title":"Figure 5","display":"","copyAsset":false,"role":"figure","size":1604581,"visible":true,"origin":"","legend":"\u003cp\u003eThe bulk geochemical characterization of the source rock from the core section. The red symbols represent samples from the JSR interval, and the yellow symbols represent those from the AHP Formation\u003c/p\u003e","description":"","filename":"5.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/003dc7908becd2cd306db3f2.png"},{"id":80331127,"identity":"4f2dbf68-0020-40e6-b70f-11f761540d0c","added_by":"auto","created_at":"2025-04-10 15:17:11","extension":"png","order_by":6,"title":"Figure 6","display":"","copyAsset":false,"role":"figure","size":422949,"visible":true,"origin":"","legend":"\u003cp\u003eThe mineralogical distribution of the JSR section in the core in terms of the identified cycles. Here, the dotted lines show the identified mineral distributions, while the solid lines show the mineral groups\u003c/p\u003e","description":"","filename":"6.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/303d5e60051b4445d6ebfe9b.png"},{"id":80331932,"identity":"7830e663-ff53-423d-8c65-3151e3ca9d57","added_by":"auto","created_at":"2025-04-10 15:25:12","extension":"png","order_by":7,"title":"Figure 7","display":"","copyAsset":false,"role":"figure","size":723880,"visible":true,"origin":"","legend":"\u003cp\u003eThe ternary diagrams of (a) Ca-Al-Si oxides and (b) Ca-P-Si oxides for the identified cycles in the JSR and AHP Formations; AS = average shale, Mtn = montmorillonite, Kln = kaolinite. Note the multipliers for CaO (2),P\u003csub\u003e2\u003c/sub\u003eO\u003csub\u003e5\u003c/sub\u003e (10) and Al\u003csub\u003e2\u003c/sub\u003eO\u003csub\u003e3\u003c/sub\u003e (5)\u003c/p\u003e","description":"","filename":"7.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/bd2f2cb175d5d5dc27c6775f.png"},{"id":80330760,"identity":"52b7865f-dbea-49ef-93eb-01c8f2801cb4","added_by":"auto","created_at":"2025-04-10 15:09:12","extension":"png","order_by":8,"title":"Figure 8","display":"","copyAsset":false,"role":"figure","size":226802,"visible":true,"origin":"","legend":"\u003cp\u003eA comparison of the enrichment factor (EF) values of the dominant elemental proxies for the JSR and AHP with those of source rocks with different origins. The EF is calculated based on Brumsack (2006) formula \u003csup\u003e52\u003c/sup\u003e. Any relative enrichment is expressed as EF \u0026gt; 1, while relative depltion by EF \u0026lt; 1.\u003c/p\u003e","description":"","filename":"8.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/fadb0e6cefe3465654345cf4.png"},{"id":80330764,"identity":"68a80d75-a71d-4397-a45a-182e4e300191","added_by":"auto","created_at":"2025-04-10 15:09:12","extension":"png","order_by":9,"title":"Figure 9","display":"","copyAsset":false,"role":"figure","size":151725,"visible":true,"origin":"","legend":"\u003cp\u003eThe cross-plots of (a) Al vs. Ti and (b) Si vs. Ti, where the former shows a strong positive correlation and the latter shows a poorer negative correlation, with several samples deviating significantly from any trend due to the presence of biogenic silica\u003c/p\u003e","description":"","filename":"9.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/1d506cb189e6761484bb4ebe.png"},{"id":80331131,"identity":"78bba24d-602d-4033-8118-3fd809c7e53f","added_by":"auto","created_at":"2025-04-10 15:17:12","extension":"png","order_by":10,"title":"Figure 10","display":"","copyAsset":false,"role":"figure","size":1503395,"visible":true,"origin":"","legend":"\u003cp\u003eThe distributions of elemental concentrations and normalized geochemical proxies for dilution, organic matter productivity, and redox conditions for the JSR cycles, compared with the TOC and average shale composition normalized to the Al content\u003c/p\u003e","description":"","filename":"10.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/6a9e92f20151bf6cb45eec22.png"},{"id":80330755,"identity":"61bf1841-1b29-4ae5-ae75-3d8f55a2af6a","added_by":"auto","created_at":"2025-04-10 15:09:12","extension":"png","order_by":11,"title":"Figure 11","display":"","copyAsset":false,"role":"figure","size":362065,"visible":true,"origin":"","legend":"\u003cp\u003eCross-plots showing the dilution of organic matter and carbonate fraction with detrital and biogenic proxies: (a) Al and Si, (b) Si+Al, (c) Ca/Al, and (d) Si/Al\u003c/p\u003e","description":"","filename":"11.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/94da661393270a878d31c668.png"},{"id":80330749,"identity":"742d2eed-a501-477d-8fa7-7d315ae808ef","added_by":"auto","created_at":"2025-04-10 15:09:12","extension":"png","order_by":12,"title":"Figure 12","display":"","copyAsset":false,"role":"figure","size":249817,"visible":true,"origin":"","legend":"\u003cp\u003eCross-plots of the TOC with various paleo-productivity proxies, showing good correlations: (a) Ni, (b) Cu, and (c) Zn\u003c/p\u003e","description":"","filename":"12.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/ac50987a663db6bc037aef10.png"},{"id":80331134,"identity":"300e43ae-7f44-4083-8c64-68680d0bb40c","added_by":"auto","created_at":"2025-04-10 15:17:12","extension":"png","order_by":13,"title":"Figure 13","display":"","copyAsset":false,"role":"figure","size":283064,"visible":true,"origin":"","legend":"\u003cp\u003ePlot of U-EF vs. Mo-EF for the three JSR cycles. The diagonal dotted black lines represent the Mo/U molar ratio in seawater (SW)\u003csup\u003e66\u003c/sup\u003e\u003c/p\u003e","description":"","filename":"13.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/c68c4c5c1c0cfe5ba09c3b23.png"},{"id":80330774,"identity":"b00f9ec7-44f0-4bfa-8bcb-7671373f4f43","added_by":"auto","created_at":"2025-04-10 15:09:13","extension":"png","order_by":14,"title":"Figure 14","display":"","copyAsset":false,"role":"figure","size":12610695,"visible":true,"origin":"","legend":"\u003cp\u003ePhotomicrographs of the representative thin sections from each cycle in plane-polarized light\u003c/p\u003e","description":"","filename":"14.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/dc0f154be35fc6403c0234cd.png"},{"id":80331137,"identity":"ff8013fa-b92e-4b3c-911c-1db99e24953b","added_by":"auto","created_at":"2025-04-10 15:17:12","extension":"png","order_by":15,"title":"Figure 15","display":"","copyAsset":false,"role":"figure","size":714308,"visible":true,"origin":"","legend":"\u003cp\u003eThe SEM-EDX results for an organic-rich sample from Cycle 1, showing both the elemental mapping and point identification of observed features\u003c/p\u003e","description":"","filename":"15.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/daf83c51d719ef1b89b3bb36.png"},{"id":80330768,"identity":"39ef8e18-c19a-44ae-b9ea-414b4c5e3426","added_by":"auto","created_at":"2025-04-10 15:09:12","extension":"png","order_by":16,"title":"Figure 16","display":"","copyAsset":false,"role":"figure","size":6765614,"visible":true,"origin":"","legend":"\u003cp\u003eThe SEM-EDX results for an organic-rich sample from Cycle 2, showing both the elemental mapping and point identification of observed features\u003c/p\u003e","description":"","filename":"16.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/9ed20970a4eaa91b481ef52a.png"},{"id":80331136,"identity":"2b7c3da3-34c8-41a6-b6a5-4cb0ff847ddf","added_by":"auto","created_at":"2025-04-10 15:17:12","extension":"png","order_by":17,"title":"Figure 17","display":"","copyAsset":false,"role":"figure","size":7882912,"visible":true,"origin":"","legend":"\u003cp\u003eThe SEM-EDX results for a Cycle 3 sample, showing the elemental mapping and point identification of observed features\u003c/p\u003e","description":"","filename":"17.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/ce89ada2476468cc6b951f9c.png"},{"id":80330786,"identity":"3b64fc44-ccdf-476c-8324-69320fb5135e","added_by":"auto","created_at":"2025-04-10 15:09:13","extension":"png","order_by":18,"title":"Figure 18","display":"","copyAsset":false,"role":"figure","size":591388,"visible":true,"origin":"","legend":"\u003cp\u003eThe major, minor, and trace element enrichment in the JSR in comparison to other source rocks (data and reference details in Supplementary table 6)\u003c/p\u003e","description":"","filename":"18.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/e27fdb4e41d0f3c970052280.png"},{"id":80330803,"identity":"2667fa5d-2ce2-4adc-ab58-4944f8737953","added_by":"auto","created_at":"2025-04-10 15:09:14","extension":"png","order_by":19,"title":"Figure 19","display":"","copyAsset":false,"role":"figure","size":875267,"visible":true,"origin":"","legend":"\u003cp\u003eThe organic and inorganic geochemical cyclicity in JSR, along with a 1D-depositional model illustrating prominent depositional features of each cycle\u003c/p\u003e","description":"","filename":"19.png","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/d88a2356ed15b87afe91c97b.png"},{"id":82538284,"identity":"2df4b212-581d-43d8-9f4b-14fc3f3c1025","added_by":"auto","created_at":"2025-05-12 16:10:55","extension":"pdf","order_by":0,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":40696113,"visible":true,"origin":"","legend":"","description":"","filename":"manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/5c2b497c-2d4a-4760-beff-932849a48acf.pdf"},{"id":80330737,"identity":"5dbdba49-2d63-4f30-9896-f99b676a0729","added_by":"auto","created_at":"2025-04-10 15:09:11","extension":"xlsx","order_by":0,"title":"","display":"","copyAsset":false,"role":"supplement","size":45862,"visible":true,"origin":"","legend":"","description":"","filename":"R2SupplementryInformation.xlsx","url":"https://assets-eu.researchsquare.com/files/rs-5449239/v1/881270539f09cdc0687e1a3f.xlsx"}],"financialInterests":"No competing interests reported.","formattedTitle":"Organic and inorganic geochemical cyclicity of a Maastrichtian oceanic open-shelf carbonate source rock","fulltext":[{"header":"Introduction","content":"\u003cp\u003eOrganic-rich mudrocks serve as valuable archives of past environmental conditions and are critical for understanding the controls on organic matter accumulation and preservation. These source rocks deposited in environments that support high biological productivity (driven by factors such as ocean currents, climate, nutrient upwelling, and optimal sunlight) and coincide with low-oxygen \u0026nbsp;bottom water conditions\u003csup\u003e1\u003c/sup\u003e. Such conditions allow organic matter to settle, accumulate, and later preserved on the seafloor. While marine conditions often facilitate organic matter accumulation, preservation is not limited to marine settings. In lacustrine systems, organic matter accumulation is further influenced by stratification and seasonal variation in oxygen levels\u003csup\u003e2\u003c/sup\u003e. Similarly, in terrestrial settings, organic matter can be retained in swamp and floodplain deposits where water saturation and rapid burial limit microbial degradation\u003csup\u003e3\u003c/sup\u003e. The interaction of organic matter with clays and carbonates, also play a crucial role in stabilizing organic material and reducing its susceptibility to microbial degradation\u003csup\u003e4\u003c/sup\u003e. Insights on the paleoenvironmental and depositional conditions of the organic matter can be gleaned through detailed organic and inorganic geochemical characterization\u003csup\u003e5-9\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eThe Cretaceous Period stands out for its abundance of organic-rich rocks, partly due to high sea level and the related flooding of vast shelf areas, the occurrence of multiple ocean anoxic events (OEAs), ocean upwelling systems, and high organic-matter production rates\u003csup\u003e10\u003c/sup\u003e. One good example of organic-rich deposits of late Cretaceous (Maastrichtian) age are the Jordan source rocks (JSR), also known as Jordan Oil shales (JOS). These source rocks are present in the lower part of the Muwaqqar Chalk Marl (MCM) Formation and are amongst the richest source rocks around the globe\u003csup\u003e11,12\u003c/sup\u003e (Figure 1). However, these source rocks are thermally immature and have not produced hydrocarbons on an economic scale\u003csup\u003e13\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eThe JSR has been the focus of several studies due to its high organic richness, shallow depths, and large areal occurrences across Jordan\u003csup\u003e14-16\u003c/sup\u003e. Numerous studies have been conducted to characterize these sequences as potential prospects for shale oil retorting\u003csup\u003e14,17,18\u003c/sup\u003e. Equivalent strata of Maastrichtian to Paleocene age have also been reported in other parts of the Eastern Mediterranean realm and are related to a large-scale upwelling system on the Southern margin of the Neo-Tethys Ocean during the late Cretaceous and early Paleogene time\u003csup\u003e19-22\u003c/sup\u003e. Despite variations in organic richness and thermal maturity across the Eastern Mediterranean region, these sequences show similarities in terms of organic and inorganic geochemical composition and hydrocarbon generation potential\u003csup\u003e6,20,23,24\u003c/sup\u003e. A key depositional control on the formation of source rocks is the interplay between global tectonics and sea-level fluctuations that have resulted in high-order cyclicity and compositional variability\u003csup\u003e25-28\u003c/sup\u003e. However, the factors governing these compositional heterogeneities within depositional cycles remain largely unexplored, leaving critical gaps in our understanding of their controls and implications. Consequently, the depositional environment, as well as the vertical and lateral variability in source rock quality, remains poorly constrained, particularly in the case of the JSR.\u003c/p\u003e\n\u003cp\u003eBy integrating organic and inorganic geochemical data from a core covering the entire JSR sequence with detailed petrographic analyses, this study aims to unravel the geochemical cyclicity and compositional heterogeneity within the JSR. The findings provide critical insights into the depositional architecture, paleoenvironmental dynamics, and key controls on organic matter preservation. Beyond its implications for the JSR, this research enhances hydrocarbon exploration and unconventional resource assessment, particularly for similar depositional settings. A refined understanding of geochemical variability in organic-rich mudrocks improves predictive models of source rock quality, organic matter transformation, and hydrocarbon generation potential. Furthermore, the study contributes to the regional correlation of Maastrichtian source rocks, facilitating a more comprehensive framework for geochemical cyclicity and compositional variability across the Eastern Mediterranean.\u003c/p\u003e\n\u003ch1\u003eGeological settings\u003c/h1\u003e\n\u003cp\u003eJordan is located at the north-western margin of the Arabian plate, which is\u0026nbsp;separated from the African plate along a left lateral transform fault system and\u0026nbsp;includes areas of Aqaba, the\u0026nbsp;Dead Sea, and the\u0026nbsp;Jordan Rift Valley (Figures 1a and b). During the late Cretaceous to the Eocene, Jordan was located on a shallow shelf at\u0026nbsp;the southern margin of the Neo-Tethys Ocean and is represented by two major lithostratigraphic groups, namely, the Ajlun Group and the Belqa Group\u003csup\u003e29\u003c/sup\u003e (Figure 1b). The Ajlun Group is late Albian to early Coniacian in age and comprises lithofacies that are mainly associated with fluvial siliciclastic and marine carbonates and evaporites\u003csup\u003e29\u003c/sup\u003e. The Belqa group was deposited during the late Coniacian to early Lutetian\u0026nbsp;time and mostly consists of sandstones, limestones, chalk marl, cherts, phosphorites, coquina limestones, and bituminous marls\u003csup\u003e26,30,31\u003c/sup\u003e. The Belqa Group comprises\u0026nbsp;the following six formations, from bottom to top they are: Wadi Umm Ghudran (WG), Amman Silicified Limestone (ASL), Al Hisa Phosphorite (AHP), Muwaqqar Chalk Marl (MCM), Umm Rijam Chert (URC), and Wadi Shallala\u0026nbsp;Chalk (WSC).\u0026nbsp;The focus of the\u0026nbsp;present study is on the Maastrichtian-aged Muwaqqar Chalk Marl (MCM) Formation.\u0026nbsp;The MCM Formation is subdivided into three main units. The lower unit of MCM is composed of organic-rich carbonate mudstones, which are also referred as the JSR interval. This organic-rich interval characterizes\u0026nbsp;intense surface water marine algal productivity and deposition under reducing conditions, resulting in significant organic matter preservation\u003csup\u003e32,33\u003c/sup\u003e. The\u0026nbsp;total organic carbon (TOC) content of this unit can reach up to 25 wt.% in places\u003csup\u003e12,19,34\u003c/sup\u003e. The middle unit of the MCM consists of chalk and bituminous marl. The upper unit of the MCM Formation consists of light yellowish chalk intercalated with black chert beds\u003csup\u003e27,30\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eThe JSR occurs in the shallow subsurface in central Jordan and outcrops in several surrounding locations (Figure 1). These source rocks extend beneath approximately 60% of Jordanian territory and rank among the richest organic-rich deposits worldwide\u003csup\u003e35\u003c/sup\u003e. Despite the immature nature of JSR, it provides a unique opportunity to examine vertical and lateral compositional heterogeneities within an anoxic depositional system, offering critical insights into source rock development and geochemical variability during deposition.\u003c/p\u003e"},{"header":"Samples and Methods","content":"\u003cp\u003eTo investigate the organic and inorganic geochemical composition and variability of the JSR, a vertical well was drilled in the Al-Lajjun region of central Jordan (Figure 1b). The well was drilled by MinXperts drilling company in Jordan, funded by King Abdullah University of Science and Technology (KAUST), where the recovered core was transported to KAUST with the support of the Ministry of Energy and Mineral Resources (MEMR), Jordan. The total depth of the well is 72 m, with a top 24-m cutting interval and an underlying 48-m core interval. Bulk organic and inorganic geochemical analyses were performed using Spectral Gamma Ray (SGR), Rock-Eval pyrolysis, X-ray diffraction (XRD), X-ray fluorescence (XRF), and Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) to identify compositions and distributions within the section. Detailed petrographic analyses using thin sections and Scanning Electron Microscopy (SEM) combined with Energy Dispersive X-ray analysis (EDX) were conducted to understand the variation in lithotypes and to observe the distribution of organic matter in association with the inorganic geochemical components of the section on the micro to nanoscale. The core profile, the analytical methods, and selected sample locations in the drilled well are shown in Figure 2. The methodology of each of these techniques is discussed in detail below\u003c/p\u003e\n\u003ch2\u003eSpectral gamma ray (SGR) data\u003c/h2\u003e\n\u003cp\u003eThe SGR data was collected at KAUST from the entire core interval (from 24m to 71m) at 0.25-m intervals, using an RS-230 gamma-ray spectrometer (Radiation Solution). The detector was calibrated to ensure a proportional relationship between the measured counts and the concentrations of potassium (K; %), uranium (U; ppm), and thorium (Th; ppm), which were converted by the spectrometer into a TGR count signal (SGR-TC). The SGR-TC signal values were subsequently converted to API units using the empirical formula GR (API) = 4Th (ppm) + 8U (ppm) + 16K (%)\u003csup\u003e37\u003c/sup\u003e.\u003c/p\u003e\n\u003ch2\u003eBulk organic geochemical analyses\u003c/h2\u003e\n\u003cp\u003eThe bulk organic geochemical analysis on the cored well was performed at KAUST with 1.5-m sample intervals for the initial 20-m depth and at 0.5-m intervals for the remaining core (total 117 samples), using a Rock-Eval 7S instrument (Vinci Technologies). The experimental approach employed established procedures\u003csup\u003e38,39\u003c/sup\u003e.The sample locations are shown in Figure 2. To ensure the reliability and precision of the results, an IFPEN-160K standard sample was included after every 10 samples, with a duplicate sample taken every 20 samples. The key results obtained from RockEval 7S include Total Organic Content (TOC in wt.%), S1 (free hydrocarbons in mg/grock), S2 (thermally cracked hydrocarbons in mg/grock), S3 (CO2 released in mg/grock), Tmax (thermal maturity parameter in\u0026nbsp;\u0026deg;C), HI (Hydrogen index), OI (Oxygen Index), PI (Production Index), TSorg (Total Organic Sulfur in wt.%), TSinorg (Total Inorganic Sulfur in wt.%), Total S (Total sulfur in wt.%).\u003c/p\u003e\n\u003ch2\u003eInorganic geochemical (XRD, XRF, and ICP-OES) analysis\u003c/h2\u003e\n\u003cp\u003eBased on the bulk organic geochemical results, a subset of 28 samples was selected to effectively capture the mineralogical and elemental composition of the section (for sample location, see Figure 2). To analyze the mineralogical composition, a D8 Advance P-XRD instrument (Bruker Technologies) equipped with Cu-K\u0026alpha; radiation (\u0026lambda; = 1.54\u0026Aring;) and a LynxEye detector was used at a current of 40 mA and a voltage 40 kV in the Imaging and Characterization Core Laboratory at KAUST. Homogenized powdered samples with a grain size ranging from 1 to 10 \u0026mu;m were used to identify the primary mineralogical components in the selected samples. The obtained diffractograms were scanned within the 2\u0026theta; angular range of 5\u0026ndash;70\u0026deg;, with a step size of 0.10\u0026rsquo;\u0026rsquo;. The diffraction patterns were identified by matching them with the International Centre for Diffraction Data (ICDD) PDF library.\u003c/p\u003e\n\u003cp\u003eFor the major and minor elemental analyses, a wavelength-dispersive S8 TIGER Series 2 XRF spectrometer (Bruker Technologies) was used in the Imaging and Characterization Core Laboratory at KAUST. To enhance the accuracy, the powdered samples were compacted into 34-mm diameter pellets before placing them in the sample holder for analysis. After the analysis, the in-build XRF software was used to calculate the concentation of all the major and minor elements.\u003c/p\u003e\n\u003cp id=\"_Toc170119117\"\u003eFor trace element analyses, an ICP-OES equipment (Agilent Technologies) was used at KAUST. Prior to analysis, the samples were digested in HNO\u003csub\u003e3\u003c/sub\u003e:HCl (3:1) for the carbonate-rich samples, and HNO\u003csub\u003e3\u003c/sub\u003e:HF (3:0.5) for the silica-rich samples, using Ultrawave-2 (UltraWave) equipment. After complete digestion, the samples were injected into an ICP-OES instrument along with the standards for estimating the trace metals concentration.\u003c/p\u003e\n\u003ch2\u003ePetrographic analysis\u003c/h2\u003e\n\u003cp\u003eFor the petrographic analysis, plug samples were taken for thin-section microscopy, and plug samples for SEM-EDX spectroscopy. These samples were selected to represent the significant variations in source rock composition and organic matter distribution in the JSR. The sample locations for the thin section and SEM are shown in Figure 2. Thin sections were studied under a LEICA DM 750P polarizing light microscope at 2.5x, 4x, and 10x magnification. The petrographic description includes different types of grains, matrix, lamination, interparticle and intraparticle porosity, fractures, and diagenetic features. Based on the macroscale and microscale observations, the thin sections were then classified using the guidelines proposed in the literature\u003csup\u003e41,42\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eFor SEM analysis, the samples were first polished and coated with titanium to enhance the resolution and quality of the images. The samples were then analyzed via FE-SEM (TESCAN) along with EDS (OXFORD) at KAUST) to obtain high-resolution secondary electron (SE) and backscattered electron (BSE) images and elemental compositions of the samples at various resolutions.\u003c/p\u003e"},{"header":"Results and interpretation","content":"\u003ch2\u003eSpectral Gamma ray distribution (SGR)\u003c/h2\u003e\n\u003cp\u003eThe SGR profile is presented, along with the concentration profiles of U, Th, and K, in Figure 3, whereas the overall data obtained is shown in Supplementary table 1. The SGR profile is closely tracked by the U concentration, thus suggesting a strong influence of this element on the SGR variation, with Th and K having little or no role (Figure 3b). A prominent feature of the profile is the very high SGR response at the bottom of the core, specifically between 63 and 72 m depth, which is also reflected in the higher concentration of U. This abnormally high SGR signal is attributed to the presence of phosphorites (which are known to have strong affinity for U) associated with the underlying AHP Formation\u003csup\u003e43\u003c/sup\u003e. The overlying lower SGR response (from 21 to 63 m depth) corresponds to the JSR interval present in the lower part of the MCM Formation and shows significant variability ranging from 20 to 90 counts.\u003c/p\u003e\n\u003ch2\u003eBulk organic geochemistry; TOC, TS, and kerogen type\u003c/h2\u003e\n\u003cp\u003eThe bulk organic geochemical distribution for the studied well is presented in Fig. 4, with detailed RockEval data provided in Supplementary table 2. The TOC and associated bulk geochemical properties vary significantly throughout the core. Within the JSR interval (from 24 to 63 m), the TOC values range from 2 wt.% to 22 wt.%, with an average of 14 wt.%. In contrast, the AHP interval (63 to 71 m), shows relatively lower TOC values, ranging from 0.1 wt.% to 14 wt.%, with an average of 6 wt.%. Similarly, the hydrogen index (HI) also varies between the two intervals. The JSR consistently exhibits high HI values with low variability (822\u0026ndash;894 mgHC/gTOC), averaging 843 mgHC/gTOC. In comparison, the AHP interval displays relatively lower HI values with greater variability (515 \u0026ndash; 835 mgHC/gTOC), averaging 740 mgHC/gTOC. The oxygen index (OI) further distinguishes the two intervals, with the JSR exhibiting low OI values (14\u0026ndash;57 mgCO\u003csub\u003e2\u003c/sub\u003e/gTOC) with an average of 26 mgCO\u003csub\u003e2\u003c/sub\u003e/gTOC, whereas the AHP shows a broader OI range (13 \u0026ndash; 298 mgCO\u003csub\u003e2\u003c/sub\u003e/gTOC) with an average of 50 mgCO\u003csub\u003e2\u003c/sub\u003e/gTOC. These geochemical trends indicate the presence of high-quality and well-preserved organic matter in JSR, whereas the AHP, despite containing good-quality organic matter, exhibits a lower preservation and higher oxidation compared to AHP, where the organic matter is of good quality but more oxidized.\u003c/p\u003e\n\u003cp\u003eThe TOC, S2, and sulfur distributions in the drilled well are remarkably similar, as shown in Figure 5, thus suggesting a strong covariation of organic content, quality, and sulfur content within the JSR. The distribution of these parameters also reveals the presence of three distinctive cycles in the JSR, which are referred to as Cycles 1\u0026ndash;3 (Fig. 4). These cycles also show distinct patterns in the SGR but not as prominent as in other geochemical parameters across the JSR interval. Cycle 1 (Cy-1) spans from 49 to 62.5 m depth and has TOC and TS values of 10.55\u0026ndash;22.19% and 2.74\u0026ndash;4.95%, respectively. Cycle 2 (Cy-2) covers the depth interval of 37\u0026ndash;49 m, with TOC and TS ranges of 6.32\u0026ndash;19.92% and 1.67\u0026ndash;4.98%, respectively. Cycle 3 (Cy-3) extends from 24 to 37 m depth, with TOC and TS ranges of 2.38\u0026ndash;17.32% and 0.67\u0026ndash;4.35%, respectively.\u003c/p\u003e\n\u003cp\u003eTo gain deeper insight into the organic geochemical characteristics of the JSR and AHP intervals in the core, both units were classified using a widely accepted petroleum source rock classification system\u003csup\u003e44\u003c/sup\u003e. The JSR interval is characterized as an excellent source rock due to its consistently high TOC and HI values (Figure 5a). Although the AHP interval exhibits slightly lower TOC and HI values compared to JSR, it still qualifies as a good-excellent source rock, indicating its potential for hydrocarbon generation. In terms of thermal maturity, both the JSR and AHP intervals display low Tmax temperatures (\u0026lt;415 \u0026deg;C) and low production index (PI) values (\u0026lt;0.05), confirming that these intervals are thermally immature (Figure 5b). The modified van Krevelen diagram (Figure 5c) further classifies both JSR and AHP as mixed Type I\u0026ndash;II kerogens (highly oil prone), with a strong potential for liquid hydrocarbon generation upon maturation. Additionally, the calculated Sulfur Index (SI) places both intervals within the Type IIS kerogen category (Figure 5d), suggesting hydrocarbon generation at lower thermal maturity levels compared to typical Type II or Type I kerogens. Interestingly, despite variations in TOC and HI values between the JSR and AHP, the organic matter type and thermal maturity remain relatively uniform. This consistency suggests that the observed geochemical cycles are not driven by changes in organic matter type, quality, or maturation, but rather by depositional conditions controlling their distribution and preservation.\u003c/p\u003e\n\u003ch2\u003eMineralogical characterization\u003c/h2\u003e\n\u003cp\u003eThe mineralogical composition of the JSR interval, as determined through XRD analysis, is predominantly carbonate-rich, with calcite as the primary mineral and occasional occurrences of dolomite. Minor amounts of clay minerals and varying quartz content are also present (Figure 6). The calcite content varies significantly, ranging from 20% to 80%, while silicates, the second most abundant mineral group, constitute 5% to 20%, with localized zones reaching up to 56%. These silicate-rich zones are primarily composed of quartz and opal cristobalite-tridymite (CT). The clay content is relatively low, fluctuating between 1% and 6%, with kaolinite being the dominant clay mineral. The phosphate mineral fluorapatite varies considerably, ranging between 2% and 12%. Other minor minerals include gypsum (1\u0026ndash;10%), pyrite (1\u0026ndash;10%), and sphalerite (1\u0026ndash;5%). A comprehensive dataset from the XRD analysis is provided in Supplementary table 3.\u003c/p\u003e\n\u003cp\u003eThe mineralogical variability across the previously identified geochemical cycles, also reveals distinct patterns. Cycles 1 and 3 are characterized by dominant carbonate mineralogy, averaging around 70%, with relatively low silicate content (10\u0026ndash;20%) and minor but variable clay concentrations (\u0026lt;5%). An anomaly at 58.5 m depth is observed, marked by a slight increase in quartz and clay content and a corresponding decrease in calcite concentrations, coinciding with an abrupt drop in TOC. This shift likely represents a short-lived detrital influx event, potentially linked to episodic sedimentation changes. In contrast, Cycle 2 exhibits a pronounced increase in silicate content (6\u0026ndash;56%), primarily due to the presence of opal CT, while carbonate concentrations vary between 20% and 60% and clay remains relatively low (\u0026lt;4%). The presence of opal CT suggests the recrystallization of biogenic silica (originally in the form of amorphous opal, or opal A) derived from silica-secreting microorganisms, such as diatoms and radiolarians\u003csup\u003e43,45\u003c/sup\u003e.\u003c/p\u003e\n\u003ch2\u003eMajor and minor elemental characterization\u003c/h2\u003e\n\u003cp\u003eThe major and minor elemental composition of the studied section, as determined by XRF analysis, aligns well with the observed mineralogical variations. The complete dataset detailing the elemental composition is provided in Supplementary table 4, while ternary plots (Figure 7) illustrate the key geochemical trends and variability. The Al₂O₃-CaO-SiO₂ ternary plot (Figure 7a) reveals a system dominated by high CaO concentrations, reflecting the prevalence of carbonate minerals. However, variations in Al₂O₃ and SiO₂ suggest contributions from clays and quartz. Within the JSR interval, Cycles 3 and most of Cycle 1 follow a mixing trend between carbonate and aluminosilicate detrital inputs. In contrast, Cycle 2 exhibits anomalously high SiO₂, corresponding to the presence of biogenic silica. The CaO-SiO₂-P₂O₅ ternary plot (Figure 7b) highlights the significant presence of phosphate (up to 10%) in all samples, with a particularly higher concentration in the AHP interval. This enrichment suggests enhanced phosphogenesis, likely influenced by episodic upwelling conditions, high biological productivity, and organic matter degradation during deposition\u003csup\u003e46\u003c/sup\u003e.\u003c/p\u003e\n\u003ch2\u003eTrace elemental characterization\u003c/h2\u003e\n\u003cp\u003eThe trace elemental data acquired for compositional analysis also serve as a proxy for identifying the prominent environmental and depositional conditions during organic matter accumulation. The overall dataset obtained is provided in Supplementary table 5. Among these, trace elements such as Ni, Cu, Zn, Cr, Cd, Mo, U, and V are often associated with higher TOC and TS sediments and are thought to be primarily controlled by both reduction-oxidation (REDOX) conditions and sequestration by organic matter and sulfur to varying degrees\u003csup\u003e5,47-49\u003c/sup\u003e. Ni and Cu (and to a lesser degree Zn and Cr) often show strong correlations with TOC and TS and are commonly used as proxies for organic matter input and productivity in sediments\u003csup\u003e5,45\u003c/sup\u003e. Meanwhile, U and V are generally accepted as REDOX indicators and are found to be enriched in low-oxygen (dysoxic and anoxic) settings, while Mo and Cd are also REDOX indicators but are often found to be enriched in sulfidic (euxinic) settings where there is free H\u003csub\u003e2\u003c/sub\u003eS in the water column as well as in sediment pore spaces\u003csup\u003e50,51\u003c/sup\u003e. The enrichment factors (EFs) of selected elements in the JSR cycles and AHP Formation, as compared to those of modern upwelling systems, Sapropels, and Cretaceous black shales are shown in Figure 8. The EF for each metal is calculated by normalizing the total metal to Al and then comparing the metal/Al ratio to that of the average shale to account for the contributions from detrital input\u003csup\u003e5,51\u003c/sup\u003e. Both the JSR cycles and the AHP are anomalously enriched in P, Zn, Cr, Mo, U, and Cd, and moderately enriched in Ni, Cu, and V. To further assess these key paleoenvironmental conditions, the elemental proxies as EFs are divided into the following 3 categories: (i) organic matter dilution, (ii) paleo-productivity, and (iii) paleo-redox conditions.\u003c/p\u003e\n\u003ch3\u003eDetrital influx/dilution\u003c/h3\u003e\n\u003cp\u003eTo account for the influence of detrital sediment input, elemental data are commonly normalized to Si, Al, and Ti due to their association with the detrital quartz and aluminosilicate fraction of sediments\u003csup\u003e5,53-55\u003c/sup\u003e.However, Si can also be enriched through the input from siliceous tests of marine algae such as diatoms and radiolarians, thus resulting in an excess non-detrital (biogenic) Si component. This excess is validated by the cross-plots of Ti \u003cem\u003evs.\u003c/em\u003e Al and Ti \u003cem\u003evs\u003c/em\u003e Si in Figure 9, which show a strong positive correlation between Ti and Al, but a poorer negative correlation, along with significant deviations from the regression line, for Ti and Si. Thus, both Al and Ti indicate a primary detrital aluminosilicate origin and are valid elements for normalization to derive geochemical proxies.\u003c/p\u003e\n\u003cp\u003eThe variations in major, minor, and trace elements (as wt.% or ppm and as normalized to Al) for the JSR cycles are shown in Figure 10. Here, the JSR interval shows an overall low Al content (2\u0026ndash;8%), with elevated values at the bottom and top of the section. This may suggest a large scale sea-level or climate change, leading to variations in the overall detrital influx into the basin. The detrital dilution is not the only influence on organic matter in sediments. The inputs of biogenic sediments (both siliceous and carbonate) during periods of high productivity can also lead to dilution, thus resulting in lower overall organic matter concentrations\u003csup\u003e56\u003c/sup\u003e. The relationship between the TOC and inorganic components in the JSR interval can be seen in Figure 11. The main non-carbonate detrital contribution to the sediment is in the form of clays and detrital quartz, which are shown using Al and Si as proxies (Figure 11a and b). The combined %Si+Al fraction plotted against %Ca indicates that the dilution of carbonates in the JSR (especially in Cycles 1 and 3) by detrital minerals mostly ranges from around 10% to 20%. Cycle 2 indicates a significantly lower overall carbonate content, and the dilution is primarily attributed to the addition of biogenic silica to the %Si+Al fraction. The influence of the inorganic components on the organic matter fraction in the JSR interval is shown in the cross-plots between TOC \u003cem\u003evs.\u003c/em\u003e Al and TOC \u003cem\u003evs.\u003c/em\u003e Ca and Si normalized to Al-content in Figure 11c and d. Here, Cycle 1 exhibits a strong positive correlation between Ca/Al and TOC, but a poor one with Si/Al. This suggests a coupled increase in both carbonate productivity and organic matter concentration, along with a negative effect of siliciclastic dilution on the latter. By contrast, Cycles 2 and 3 show poor correlations between Ca/Al and Si/Al and TOC, thus suggesting that dilution by a siliciclastic detrital fraction cannot simply explain the variation in the amount of organic matter in these cycles.\u003c/p\u003e\n\u003ch3\u003ePaleoproductivity\u003c/h3\u003e\n\u003cp\u003eThe high amounts of organic carbon (10\u0026ndash;20%) and its consistently high HI values (800\u0026ndash;900 mg HC/gTOC) are strong evidence of high marine algal productivity in the JSR section. In addition, the TOC is closely associated with trace metals such as Ni, Cu, and Zn, which are commonly used as geochemical proxies for productivity\u003csup\u003e57-59\u003c/sup\u003e. It is postulated to be taken up by marine algae and subsequently transported and incorporated into sediments where the organic matter is preserved due to low oxygen conditions\u003csup\u003e50,60\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003eThe JSR interval in Jordan is reported to contain high trace element concentrations\u003csup\u003e19,45,51\u003c/sup\u003e, as corroborated by this study. The concentration profiles (as ppm metals) show a strong correspondence with the paleo-productivity proxies and the TOC profile (Figure 10). The trace elements (especially Ni and Cu) exhibit a high degree of correlation with TOC, for the whole section and for each cycle (Figure 12). The absolute concentrations of Ni, Cu, and Zn are all above typical background shale values, and the strong correlation with the TOC suggests that the bulk of these metals are closely associated with the organic fraction. Small and consistent differences between the cycles suggest that other factors, such as redox or availability of S, as well as varied clastic input, may also have played a minor role.\u003c/p\u003e\n\u003cp\u003eThe presence of significant amounts of P has been previously noted for the JSR on a regional scale. It is indicative of high productivity driven by upwelling in the southern marine platform of the Tethyan margin, and specifically in the Jordan region\u003csup\u003e19,29\u003c/sup\u003e. While the AHP Formation is noted for its exceptionally high P contents and is designated as a source for phosphorite mining, all the three identified cycles of the JSR interval are also very rich in this element (~2\u0026ndash;5%), with EF values \u0026gt;100, and C\u003csub\u003eorg\u003c/sub\u003e/P ratios (~5\u0026ndash;23). The P cycle in such settings is complex. Bioavailable P is taken up by primary producers and transported to the sediment-water interface if the organic matter is not oxidized. However, its transport and release from productive surface waters to the sediment-water interface is also controlled by the presence of Mn and Fe oxyhydroxides, which are strongly affected by redox conditions\u003csup\u003e60,61\u003c/sup\u003e. The elevated EFs and low Corg/P for the JSR in a highly reducing setting is surprising, as anoxia generally promotes dissolution of P-transporting phases and effectively remobilizes P into the water column. Algeo and Ingall\u003csup\u003e62\u003c/sup\u003e have demonstrated that detrital P is almost always a very minor component of marine sediments, hence the bulk of the P found in the JSR interval is likely to be authigenic. Possible explanations for the high P contents (especially relative to the TOC) are precipitation as authigenic mineral phases (fluorapatite, authigenic Fe-phosphates) and preservation as fecal pellets and fishbone material. The latter are found in abundance in the AHP Formation and in the JSR observed in SEM images. Consequently, the high amount of P in the JSR section and its mimicking of the TOC profile can be interpreted as indicative of a high productivity setting.\u003c/p\u003e\n\u003ch3\u003ePaleoredox:\u003c/h3\u003e\n\u003cp\u003eMolybdenum (Mo), vanadium (V), and uranium (U) serve as established geochemical proxies for reconstructing bottom-water redox conditions during organic matter preservation\u003csup\u003e5,57,59\u003c/sup\u003e. The distribution profiles of these elements (as metal concentrations) and its normalization to Al content are shown in Figure 10. Here, all three elements are highly enriched in the JSR interval compared to normal background average shale values (Post-Archean Australian Shale-PAAS)\u003csup\u003e52\u003c/sup\u003e. In Cycle 1, these proxies exhibit a significant decrease at approximately 58.5 m depth, which coincides with a similar decrease in other geochemical proxies, potentially reflecting a short-lived detrital event. Apart from this episode, highly reducing conditions appear to persist overall in Cycles 1 and 2, with Cycle 2 showing significant enrichments of Mo, along with V and U. Such pronounced Mo enrichment has been associated with highly sulfidic (euxinic) conditions\u003csup\u003e50,63-65\u003c/sup\u003e. Based on the threshold values proposed by Scott and Lyons\u003csup\u003e64\u003c/sup\u003e and the EF model proposed by Algeo and Tribovillard\u003csup\u003e66\u003c/sup\u003e, Cycles 1 and 2 have high Mo concentrations (50\u0026ndash;180 ppm), thus suggesting euxinic to periodic euxinic conditions in the water column (Figure 13). In contrast, Cycle 3 has relatively lower Mo concentrations (23\u0026ndash;60 ppm) and is more likely to have had anoxia to periodic euxinia in the water column during deposition of the organic matter.\u003c/p\u003e\n\u003ch2\u003eThin section petrography\u003c/h2\u003e\n\u003cp\u003eThin section (TS) sections were produced from plugs taken from different depth intervals to showcase significant petrographic heterogeneities starting from the AHP Formation and across the JSR interval, and were numbered consecutively from bottom to top of the section. Thus, TS-01 was taken from a depth of 64.5 m and marks the transition between the underlying AHP Formation and the JSR interval. Based on Dunham\u0026apos;s classification\u003csup\u003e41\u003c/sup\u003e, this thin section can be categorized as phosphatic packstone to grainstone due to its distinctive texture, which consists mainly of phosphatic peloids, phosphatic ooid grains, fish fragments, foraminifera, and lithoclasts (Figure 14a). Calcite and apatite are the most common minerals, with poorly sorted grains embedded in a brownish, organic-rich matrix. This thin section shows strong bioturbation is significantly bioturbated and has an estimated TOC of 6.5 wt.%.\u003c/p\u003e\n\u003cp\u003eThin sections TS-02 and TS-03 were obtained from depths of 55.5 and 50.0 m, having TOC of 18.8 and 19.5 wt.%, respectively (Figure 14b-c). Both thin sections can be classified as organic-rich carbonate mudstones and represent Cycle 1 of the JSR interval. These facies are characterized by a light to dark brown mud matrix containing a relatively low grain fraction (5\u0026ndash;15%). The grain assemblage is dominated by well-preserved foraminifera shells, with occasional occurrences of phosphatized bone fragments (up to 5 mm) and bivalve fragments. The dark brown organic matter primarily fills in the fossil chambers, but is also observed as part of the matrix. Notably, no visible porosity or microfractures are observed in either of these two thin sections.\u003c/p\u003e\n\u003cp\u003eThin sections TS-04, TS-05, and TS-06 correspond to depths of 46, 43, and 39.5 m, with TOC values ranging from 12.1 wt.% to 17.6 wt.% respectively, and represent Cycle 2 of the JSR interval (Figure 14d\u0026ndash;f). These thin sections are classified as silica-rich mudstones to wackestones. This categorization reflects a significantly higher grain density (up to 50%) and dominant silicate mineralogy (particularly intragranular Opal CT cement). The primary grain components are well-preserved planktonic and benthic foraminifera with some bivalve fragments. Notably, the chambers of these biogenic grains are partially filled with cement (either quartz or calcite). Organic matter appears as brownish-hued elliptical/lenticular-shaped lenses concentrated within the matrix but also partially or entirely fills the fossil chambers. Similarly to previous TS-01, -02, and -03, no visible porosity or fractures are observed in TS-04, TS-05, and TS-06.\u003c/p\u003e\n\u003cp\u003eThin sections TS-07, TS-08, and TS-09 were retrieved from depths of 35, 30, and 25.5 m, with TOC values of 12, 14.7, and 9.2 wt.%, respectively, representing Cycle 3 of the JSR interval (Figure 14g\u0026ndash;i). These thin sections are classified as \u0026ldquo;Foraminifera wackestone to packstone\u0026rdquo; and exhibit relatively lower TOC values compared to cycles \u0026nbsp;1 \u0026amp; 2 of the JSR section. This classification reflects a higher grain density (exceeding 50%), with foraminifera fossils being the dominant grain component. Occasional occurrences of other biogenic grains, such as bivalve fragments and fish remains, are also observed. The biogenic grains are primarily filled with calcite cement. In contrast to cycles 1 \u0026amp; 2, the organic matter distribution is found mostly concentrated in the matrix with minimal occurrences inside the fossil chambers. \u0026nbsp;\u003c/p\u003e\n\u003ch2\u003eScanning electron microscopy with energy dispersive X-ray (SEM-EDX) analysis\u003c/h2\u003e\n\u003cp\u003eTo further highlight the compositional and textural heterogeneity and to understand the distribution of organic matter, a selected sample from each cycle was subjected to a detailed SEM-EDX analysis. The results obtained for a sample from Cycle 1 (depth = 53 m), representing an organic-rich zone with a 19% TOC content, are presented in Figure 15. This SEM sample exhibits a heterogeneous composition with distinct biogenic grains and matrix (Figure 15a and b). The biogenic grains are mainly composed of calcite and phosphate minerals and exhibit well-preserved original structures with only occasional fractures (Figure 15a). The carbonate-dominated grains also display well-preserved microporosity, which is mostly filled with organic matter. The latter is discernible by a darker grey hue in Figure 15c and characterized by elevated C and S contents in the EDX results (Figure 15e). The high-resolution image in Figure 15d also reveals the presence of organic matter in the matrix, showing an amorphous structure surrounding the grain particles. Besides this, the matrix is dominated by very fine Si-rich and Ca-rich particles (Figure 15d). Pyrite is also found in pore spaces alongside the organic matter, appearing as small framboidal grains (Figure 15c,d). Pyrite formation is primarily driven by microbial sulfate reduction (MSR), where sulfate-reducing bacteria convert sulfate into hydrogen sulfide (H₂S), which then reacts with iron to form pyrite (FeS₂)\u003csup\u003e67\u003c/sup\u003e.\u003c/p\u003e\n\u003cp\u003e\u0026nbsp;The SEM-EDX results for a sample from Cycle 2 (taken from a depth of 43 m) are shown in Figure 16. This also corresponds to an organic-rich interval with an 18% TOC content. The biogenic grain type and matrix texture of this sample resembles that of Cycle 1 but with a significant increase in the Si content. This silica enrichment manifests primarily as cement, which is present in the biogenic fossil chambers but also in the surrounding matrix (Figure 16a). The silica cement is interpreted to be of biogenic origin through the recrystallization of amorphous opaline-silica originating from diatoms and radiolarians\u003csup\u003e68\u003c/sup\u003e. The biogenic grains are primarily composed of calcite and apatite, with occasional dolomite occurrences and small nodular/framboidal pyrite (Figure 16a,b). Notably, the organic matter present within the fossil chamber co-occurs with the opal CT cement (Figure 16a,b), however, it is also present in the matrix \u0026nbsp;(Figure 16b-d). Furthermore, a high concentration of Zinc sulfide (ZnS) due to elevated Zn and S concentration, is observed alongside organic matter in the fossil chamber (Figure 16a,b). The presence of ZnS within the fossil chamber represents highly reducing/euxinic bottom water conditions, where hydrogen sulfide (H₂S), in the absence of iron (Fe), reacts with dissolved Zn\u0026sup2;⁺, leading to ZnS precipitation\u003csup\u003e69,70\u003c/sup\u003e. The presence of some clay particles is also observed through elevated Al and K signatures in the SEM-EDX results (Figure 16b,d,e).\u003c/p\u003e\n\u003cp\u003eThe SEM-EDX analysis of a sample from Cycle 3 is presented in Figure 17. This sample was retrieved from a depth of 33 m and exhibits a lower TOC content (9%) compared to Cycles 1 and 2. Hence, this sample provides an opportunity to examine the effects of varying organic richness on the organic matter distribution. As with the Cycle 1 sample, the biogenic grains of the Cycle 3 sample are primarily composed of calcite and apatite, albeit with a higher grain density and a greater number of broken shells/fragments (Figure 17a). Notably, the intraparticle porosity (fossil chambers) that was filled with organic matter in Cycles 1 and 2 is either empty or filled with calcite/dolomite cement in Cycle 3. (Figure 17a,b). The dolomite mostly occurs as a diagenetic alteration of the calcite grains with a similar grain texture to that of calcite; however, it is also observed as individual rhombohedral crystal grains (Figure 17b,c). Alongside the dolomite, a higher clay content is revealed by the elevated Al, K, Si, and O concentrations (Figure 17b,d). The organic matter distribution in this sample is mostly concentrated in the matrix, surrounding the grain particles with an elliptical to sub-elliptical shape and filling in the interparticle pore spaces (Figure 17d).\u003c/p\u003e"},{"header":"Discussion","content":"\u003cp\u003eThe geochemical and petrographic data from the Maastrichtian organic-rich carbonate source rocks of the MCM Formation in central Jordan reveal a complex depositional history characterized by cyclic variations in organic matter preservation, mineralogical composition, and redox conditions. These geochemical cycles reflect the dynamic interplay of climatic fluctuations, sea-level changes, and sedimentary processes, which collectively influenced the distribution and quality of organic matter. Key factors governing these geochemical variations, assess their implications for hydrocarbon generation potential, and explore their significance in a broader regional stratigraphic and paleoenvironmental context are discussed in detail.\u003c/p\u003e \u003cdiv id=\"Sec20\" class=\"Section2\"\u003e \u003ch2\u003eDepositional Setting\u003c/h2\u003e \u003cp\u003eContrary to the common perception of relatively stagnant depositional conditions in deep pelagic settings, the JSR interval is proposed to have been deposited under more dynamic conditions in a shallow shelf environment. This depositional setting was likely influenced by a combination of climatic fluctuations, sea-level changes, and localized sedimentary dynamics that created a highly variable geochemical environment, resulting in extreme geochemical signatures\u003csup\u003e\u003cspan citationid=\"CR45\" class=\"CitationRef\"\u003e45\u003c/span\u003e,\u003cspan citationid=\"CR71\" class=\"CitationRef\"\u003e71\u003c/span\u003e\u003c/sup\u003e (Fig.\u0026nbsp;\u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e). The geochemical proxies in the JSR reflecting such paleodepositional conditions and compared with source rocks of different origins are shown in Fig.\u0026nbsp;\u003cspan refid=\"Fig18\" class=\"InternalRef\"\u003e18\u003c/span\u003e. The paleoenvironmental reconstitution, supported by elemental geochemical data, suggests that JSR deposition occurred in a highly bio-productive system driven by sustained nutrient upwelling along the southern margin of the Neo-Tethys. This upwelling facilitated high primary productivity, which combined with restricted bottom-water circulation, contributed to organic-rich sediment accumulation under anoxic to euxinic conditions. Similar examples of source rocks with variable but relatively high organic matter and high trace metal enrichments include the siliciclastic Paleozoic black shales\u003csup\u003e\u003cspan citationid=\"CR72\" class=\"CitationRef\"\u003e72\u003c/span\u003e\u003c/sup\u003e, the siliciclastic Eocene black shale succession from the central Arctic Lomonosov Ridge\u003csup\u003e\u003cspan citationid=\"CR73\" class=\"CitationRef\"\u003e73\u003c/span\u003e\u003c/sup\u003e, and the carbonate Toarcian black shales of the Posidonia Shale Formation in the Dutch Central Graben\u003csup\u003e\u003cspan citationid=\"CR74\" class=\"CitationRef\"\u003e74\u003c/span\u003e\u003c/sup\u003e. These formations share key geochemical and mineralogical proxies indicative of deposition under relatively high-energy, nutrient-rich shallow marine conditions.\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec21\" class=\"Section2\"\u003e \u003ch2\u003eAge, duration, and characteristics of depositional cycles\u003c/h2\u003e \u003cp\u003eThe identified JSR cycles can be dated by nannofossil biozones (UC 16b, 17, 18, and 19)\u003csup\u003e\u003cspan citationid=\"CR40\" class=\"CitationRef\"\u003e40\u003c/span\u003e\u003c/sup\u003e (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003e). The nannofossil biostratigraphy suggests deposition between 72.2 and 68.8 Ma, with cycle durations of 0.9 to 1.3 Ma and an overall rate of deposition of 12m/Ma\u003csup\u003e40\u003c/sup\u003e. The age dating classifies these cycles as third-order depositional sequences, nested within a second-order transgressive phase\u003csup\u003e\u003cspan citationid=\"CR25\" class=\"CitationRef\"\u003e25\u003c/span\u003e,\u003cspan citationid=\"CR56\" class=\"CitationRef\"\u003e56\u003c/span\u003e,\u003cspan citationid=\"CR75\" class=\"CitationRef\"\u003e75\u003c/span\u003e\u003c/sup\u003e. Each cycle reflects unique variations in organic matter enrichment, mineral assemblages, and depositional dynamics, driven by fluctuations in primary productivity, redox conditions, and sediment supply mechanisms (Fig.\u0026nbsp;\u003cspan refid=\"Fig19\" class=\"InternalRef\"\u003e19\u003c/span\u003e).\u003c/p\u003e \u003cp\u003e \u003c/p\u003e \u003cp\u003e \u003cem\u003eCycle 1\u003c/em\u003e, spanning 1.13 Ma with a thickness of 13.5 m and a sedimentation rate of 13.3 m/Ma, is characterized by high carbonate content and very high TOC levels, classifying it as an organic-rich carbonate mudstone facies. The depositional conditions during this cycle remained relatively stable, with sustained high organic matter productivity and predominantly euxinic bottom waters. A short-lived detrital input event is observed at 58.5 m depth (Figs.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e and \u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e), marked by a localized decrease in TOC and an increase in clay content (Fig.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e). The exact cause of this event is uncertain, but potential triggers include a period of storm surges, nearby volcanism, or seismic activity. A unique feature of this cycle is the presence of organic matter/solid bitumen within the fossil chambers (Fig.\u0026nbsp;\u003cspan refid=\"Fig15\" class=\"InternalRef\"\u003e15\u003c/span\u003e). This suggests pre-expulsion bitumen migration at relatively low temperature, commonly associated with Type-IIS kerogens\u003csup\u003e\u003cspan citationid=\"CR13\" class=\"CitationRef\"\u003e13\u003c/span\u003e\u003c/sup\u003e. In these rocks, the sulfur-rich organic matter behaves as a semi-mobile phase that can migrate over short distances inside source rocks prior to the incipient oil generation stage\u003csup\u003e\u003cspan citationid=\"CR76\" class=\"CitationRef\"\u003e76\u003c/span\u003e\u003c/sup\u003e.\u003c/p\u003e \u003cp\u003e \u003cem\u003eCycle 2\u003c/em\u003e spans 1.31\u0026nbsp;million years, with a thickness of 11.5 m and a sedimentation rate of 9.2 m/Ma. This cycle corresponds to silica-rich mudstone to wackestone facies. A significant compositional shift is observed in this cycle marked by an increase in Si-content and a corresponding decrease in Ca-content (Figs.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e and \u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e). This shift reflects a change in the dominant biota, where silica-secreting organisms, such as diatoms, radiolarians, and sponges produced amorphous silica (Opal-A), which later transformed into Opal-CT during diagenesis\u003csup\u003e\u003cspan citationid=\"CR77\" class=\"CitationRef\"\u003e77\u003c/span\u003e,\u003cspan citationid=\"CR78\" class=\"CitationRef\"\u003e78\u003c/span\u003e\u003c/sup\u003e. The shift in biota is interpreted to represent an increased nutrient supply favouring the proliferation of siliceous organisms over carbonate-secreting ones\u003csup\u003e\u003cspan citationid=\"CR54\" class=\"CitationRef\"\u003e54\u003c/span\u003e,\u003cspan citationid=\"CR79\" class=\"CitationRef\"\u003e79\u003c/span\u003e\u003c/sup\u003e. Such biogenic siliceous oozes typically accumulate in nutrient-rich upwelling regions, similar to those found in the equatorial and polar belts, as well as coastal upwelling zones like the North Pacific and Antarctic\u003csup\u003e\u003cspan citationid=\"CR80\" class=\"CitationRef\"\u003e80\u003c/span\u003e\u003c/sup\u003e. All these regions feature high biogenic productivity and reducing bottom-water conditions. Corresponding elevated concentrations of productivity-related trace metals (Ni, Cu, and Zn), and paleoredox trace metals (i.e. Mo, V and U) are observed (Fig.\u0026nbsp;\u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e) in Cycle 2. We interpret these changes in upwelling and nutrient supply to be driven by an increase in the vigor of long-shore currents due to a sustained 1\u0026nbsp;million year-long change in climate and wind patterns.\u003c/p\u003e \u003cp\u003eThe co-occurrence of Opal CT and organic matter inside the fossil chambers is another unique feature of this cycle (Fig.\u0026nbsp;\u003cspan refid=\"Fig16\" class=\"InternalRef\"\u003e16\u003c/span\u003e). This indicates a pre-oil bitumen migration inside the fossil chamber after the dissolution and re-crystallization of opal-A to opal-CT, leading to the simultaneous entrapment of both organic and inorganic components within the fossil chambers.\u003c/p\u003e \u003cp\u003e \u003cem\u003eCycle 3\u003c/em\u003e, spanning 0.91 Ma, has a thickness of 14.5 m and a sedimentation rate of 14.8 m/Ma. This cycle marks a return to carbonate-dominated deposition, with a decline in siliceous biota and a corresponding re-emergence of calcium-secreting organisms. Lower concentrations of productivity and redox proxies (Ni, Cu, Zn, Mo, V, U) corroborate a reduced paleo-productivity and/or organic matter preservation for this cycle (Fig.\u0026nbsp;\u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e). In this cycle the increase in Al and Ti content indicates a higher detrital input, mostly in the form of clays. This, in combination with a higher density of carbonate grains \u0026ndash; mainly benthic foraminifera \u0026ndash; suggests an increase in currents and oxygenation and relatively lower TOC preservation compared to the other JSR cycles (Figs.\u0026nbsp;\u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e and \u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e). Unlike the previous cycles, the organic matter in this cycle is mostly dispersed within the matrix, with minimal occurrence inside fossil chambers (Figs.\u0026nbsp;\u003cspan refid=\"Fig14\" class=\"InternalRef\"\u003e14\u003c/span\u003e and \u003cspan refid=\"Fig17\" class=\"InternalRef\"\u003e17\u003c/span\u003e). Instead, these chambers are predominantly filled with calcite cement, suggesting that early carbonate cementation occurred before the organic matter reached pre-bitumen migration temperatures. This could also be attributed to the relatively lower organic sulfur content in this cycle, which may have reduced an early mobility of organic matter within the rock matrix.\u003c/p\u003e \u003c/div\u003e \u003cdiv id=\"Sec22\" class=\"Section2\"\u003e \u003ch2\u003eRegional correlation and geochemical cyclicity\u003c/h2\u003e \u003cp\u003eOverall, the JSR exhibits geochemical characteristics like other late Cretaceous source rocks in the eastern Mediterranean region, with its composition primarily dominated by carbonate minerals, particularly calcite\u003csup\u003e\u003cspan citationid=\"CR20\" class=\"CitationRef\"\u003e20\u003c/span\u003e,\u003cspan citationid=\"CR21\" class=\"CitationRef\"\u003e21\u003c/span\u003e,\u003cspan citationid=\"CR24\" class=\"CitationRef\"\u003e24\u003c/span\u003e,\u003cspan citationid=\"CR28\" class=\"CitationRef\"\u003e28\u003c/span\u003e,\u003cspan citationid=\"CR81\" class=\"CitationRef\"\u003e81\u003c/span\u003e\u003c/sup\u003e. A key new observation in the JSR is the presence of three distinct geochemical cycles, each characterized by unique variations in organic and inorganic geochemical composition (Fig.\u0026nbsp;\u003cspan refid=\"Fig4\" class=\"InternalRef\"\u003e4\u003c/span\u003e, \u003cspan refid=\"Fig6\" class=\"InternalRef\"\u003e6\u003c/span\u003e, \u003cspan refid=\"Fig10\" class=\"InternalRef\"\u003e10\u003c/span\u003e). The detailed characterization of the JSR geochemical cycles presents a unique opportunity to develop a high-resolution regional stratigraphic model for Eastern Mediterranean source rocks. Encouraging support for such an effort is provided by the recognition of TOC cycles, which have been documented by Meilijson et al.\u003csup\u003e\u003cspan citationid=\"CR23\" class=\"CitationRef\"\u003e23\u003c/span\u003e\u003c/sup\u003e in Maastrichtian organic-rich strata of the Shefela Basin. A regional correlation would significantly enhance the understanding of the late Cretaceous Eastern Mediterranean shelf system, paleo-oceanographic conditions at the southern Tethys margin, source rock distribution in MENA, and hydrocarbon potential across the region.\u003c/p\u003e \u003cdiv id=\"Sec23\" class=\"Section3\"\u003e \u003ch2\u003eImpact of compositional heterogeneity in unconventional reservoirs\u003c/h2\u003e \u003cp\u003eUnderstanding the shifts in organic and inorganic geochemical composition is crucial for evaluating the petroleum potential of source rocks, as it directly influences their mechanical, thermal, and geochemical properties\u003csup\u003e\u003cspan citationid=\"CR34\" class=\"CitationRef\"\u003e34\u003c/span\u003e\u003c/sup\u003e. The cyclic alternation between carbonate- and silica-rich intervals, as observed in the JSR, has significant implications both for conventional and unconventional resource assessment. These variations can indicate preferential reservoir zones (\"sweet spots\"), guiding well placement and completion strategies. For instance, silica-rich intervals, particularly those cemented by Opal-CT, are generally more brittle than carbonate-cemented equivalents, enhancing the intervals disposition for hydraulic fracturing\u003csup\u003e\u003cspan citationid=\"CR82\" class=\"CitationRef\"\u003e82\u003c/span\u003e\u003c/sup\u003e. In addition to its mechanical effects, biogenic silica also alters the thermal properties of the source rock\u003csup\u003e\u003cspan citationid=\"CR34\" class=\"CitationRef\"\u003e34\u003c/span\u003e\u003c/sup\u003e. Compared to carbonate-rich lithologies, silica-rich intervals have higher thermal conductivity, leading to earlier hydrocarbon generation and potential of expulsion via maturation-caused natural fracture systems\u003csup\u003e\u003cspan citationid=\"CR34\" class=\"CitationRef\"\u003e34\u003c/span\u003e\u003c/sup\u003e. Such information is critical for identifying migration pathways and refining basin modeling predictions. Moreover, understanding the spatial and stratigraphic distribution of such cycles enables improved characterization of unconventional reservoirs, optimizing stimulation techniques and maximizing hydrocarbon recovery from organic-rich source rocks.\u003c/p\u003e \u003c/div\u003e \u003c/div\u003e"},{"header":"Conclusion","content":"\u003cp\u003eThis study provides a detailed organic and inorganic geochemical and mineralogical characterization of the Maastrichtian carbonate source rocks in central Jordan, revealing significant compositional heterogeneities linked to depositional cyclicity. The JSR shares key geochemical and paleoenvironmental characteristics with other organic-rich deposits across the Eastern Mediterranean, with its deposition influenced by a major nutrient upwelling system along the southern Tethys margin during the Maastrichtian.\u003c/p\u003e\n\u003cp\u003eThe identification of three distinct geochemical cycles within the JSR highlights variations in organic matter distribution, mineralogical composition, and depositional conditions. Geochemical proxies suggest that shifts in nutrient upwelling intensity and redox conditions played a critical role in organic matter accumulation and preservation. Notably, the transition from carbonate-dominated to silica-dominated biota reflects climatic and oceanographic fluctuations, potentially driven by variations in wind patterns and upwelling dynamics, which altered nutrient availability.\u003c/p\u003e\n\u003cp\u003eThe presence of solid bitumen and Opal-CT within intra-particle fossil chambers provides direct evidence of early silica diagenesis and pre-oil bitumen migration under low thermal maturity conditions. This observation highlights the role of organic-sulfur-rich kerogen in early hydrocarbon mobilization and storage, with implications for unconventional hydrocarbon potential in similar systems. Additionally, variations in detrital influx, as indicated by Al and Ti enrichments in Cycle 3, suggest periodic shifts in terrestrial input that influenced organic matter dilution and preservation.\u003c/p\u003e\n\u003cp\u003eThe recognition of these high-order geochemical cycles in the JSR and their correlation with time-equivalent organic-rich intervals across the southern Tethys margin provide a refined stratigraphic framework for regional palaeoceanographic reconstruction. Integrating these geochemical insights into petroleum system models improves the predictive accuracy of exploration strategies for both conventional and unconventional hydrocarbon resources. In unconventional reservoirs, understanding compositional heterogeneities is critical for optimizing drilling strategies, refining completion techniques, and enhancing hydrocarbon recovery efficiency.\u003c/p\u003e"},{"header":"Declarations","content":"\u003cp\u003e\u003cstrong\u003eData Availability Statement:\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eAll data generated or analyzed during this study are included in this published article and its Supplementary Information files.\u003c/p\u003e\n\u003cp\u003eAcknowledgments:\u0026nbsp;The authors express their sincere gratitude to the Ministry of Energy and Mineral Resources (MEMR) and Karak International Oil (KIO), Jordan, for providing the core samples and granting the necessary approvals for this research. We also extend our appreciation to the members of KAUST-CARESS team for their valuable support in data analysis and manuscript revision. Additionally, we would like to thank Jihede Haj Messaoud (KAUST) for his help with the nannofossil and age-dating results. Finally, we thank the editor and anonymous reviewers for their constructive feedback and insightful comments, which have greatly enhanced the quality of this manuscript.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eAuthor contributions\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eMuhammad Usman\u003c/strong\u003e: Writing \u0026ndash; original draft, Writing \u0026ndash; review \u0026amp; editing, Visualization, Validation, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. \u003cstrong\u003eMaria Ardila-Sanchez:\u003c/strong\u003e Investigation, Methodology, Data curation, Validation. \u003cstrong\u003eErdem Idiz:\u0026nbsp;\u003c/strong\u003eFormal analysis, Writing \u0026ndash; review \u0026amp; editing, Validation, Data curation, Visualization, Conceptualization. \u003cstrong\u003eIsraa S. Abu-Mahfouz:\u003c/strong\u003e Writing \u0026ndash; review \u0026amp; editing, Resources.\u003cstrong\u003e\u0026nbsp;Frans van Buchem:\u0026nbsp;\u003c/strong\u003eWriting \u0026ndash; review \u0026amp; editing, Conceptualization, Validation, Data curation, Methodology. \u003cstrong\u003eVolker Vahrenkamp:\u003c/strong\u003e Writing \u0026ndash; review \u0026amp; editing, Validation, Funding acquisition, Project administration, Supervision, Resources, Conceptualization.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eAdditional Information\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eCompeting interests:\u0026nbsp;\u003c/strong\u003eThe author(s) declare no competing interests\u003c/p\u003e"},{"header":"References","content":"\u003col\u003e\u003cli\u003e\u003cspan\u003eMcCarthy, K. et al. 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A. \u003cem\u003ePetroleum Syst. Tethyan Region\u003c/em\u003e doi:\u003cspan class=\"ExternalRef\"\u003e\u003cspan class=\"RefSource\"\u003e10.1306/13431883M1063630\u003c/span\u003e\u003cspan address=\"10.1306/13431883M1063630\" targettype=\"DOI\" class=\"RefTarget\"\u003e\u003c/span\u003e\u003c/span\u003e (2014).\u003c/span\u003e\u003c/li\u003e \u003cli\u003e\u003cspan\u003eIakusheva, R., Abu-Mahfouz, I., Usman, M., Finkbeiner, T. \u0026amp; Vahrenkamp, V. in \u003cem\u003e85th EAGE Annual Conference \u0026amp; Exhibition (including the Workshop Programme).\u003c/em\u003e 1\u0026ndash;5 (European Association of Geoscientists \u0026amp; Engineers).\u003c/span\u003e\u003c/li\u003e\u003c/ol\u003e"}],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":true,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":false,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":false,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"scientific-reports","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":false,"externalIdentity":"scirep","sideBox":"Learn more about [Scientific Reports](http://www.nature.com/srep/)","snPcode":"","submissionUrl":"","title":"Scientific Reports","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"stoa","reportingPortfolio":"Scientific Reports","inReviewEnabled":true,"inReviewRevisionsEnabled":true},"keywords":"Source rock characterization, Geochemical cyclicity, Organic/Inorganic compositional heterogeneities, Paleo-environmental conditions, Jordan source rocks","lastPublishedDoi":"10.21203/rs.3.rs-5449239/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-5449239/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003eOrganic-rich source rocks are not only crucial for hydrocarbon exploration and production but also serve as valuable archives of past environmental conditions. This study investigates the Upper Cretaceous (Maastrichtian) source rocks present in the Al-Lajoun basin of central Jordan, to identify geochemical compositional variability corresponding to the paleo-environmental conditions during deposition. To this end, a multifaceted approach using Rock-Eval, SGR, XRD, XRF, ICP-OES, SEM-EDX, and thin-section petrography is utilized to understand bulk organic and inorganic geochemical proxies. Based on the results, the Jordan source rock is characterized as organic-rich, Type IIS kerogen, and thermally immature source rock, representing three distinct cycles of organic matter distribution. Cycle 1 is defined as organic-rich carbonate mudstones with an average total organic carbon (TOC) content of 17 wt.%. This cycle represents high organic matter productivity, anoxic bottom water conditions, and episodic detrital influx (clays and detrital quartz). Cycle 2 is characterized by silica-rich mudstones to wackestones with an average TOC of 15 wt.%, reflecting a shift from carbonate-dominated to silica-dominated biota, likely driven by increased nutrient supply and changing climatic conditions. These conditions resulted in high bioproductivity and highly reducing anoxic/euxinic bottom water conditions during deposition. Cycle 3 represents foraminiferal wackestones to packstones with an average TOC of 12 wt.%. This cycle is characterized by a relatively high detrital sediment input, with comparatively low organic matter productivity and anoxic bottom water conditions. The organic and inorganic geochemical variability between the identified cycles implies changing climatic conditions over the open shelf setting, which in turn implies changes in ocean currents impacting the upwelling system of the Tethys margin. Understanding this relationship between ocean currents, climate, and the organic and inorganic geochemical composition is crucial for efficiently exploring and exploiting organic-rich source rocks. A regional correlation of these cycles and their geochemical signatures could provide a powerful tool to trace ocean currents and associated climate change along the Tethys margin during the Early Maastrichtian.\u003c/p\u003e","manuscriptTitle":"Organic and inorganic geochemical cyclicity of a Maastrichtian oceanic open-shelf carbonate source rock","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2025-04-10 15:09:06","doi":"10.21203/rs.3.rs-5449239/v1","editorialEvents":[{"type":"communityComments","content":0},{"type":"decision","content":"Accepted","date":"2025-04-23T05:23:22+00:00","index":"","fulltext":""},{"type":"editorInvitedReview","content":"","date":"2025-04-20T09:35:01+00:00","index":"hide","fulltext":""},{"type":"editorInvitedReview","content":"","date":"2025-04-09T10:28:12+00:00","index":"hide","fulltext":""},{"type":"reviewerAgreed","content":"240516429830362307534690308991328969618","date":"2025-04-09T10:06:44+00:00","index":"hide","fulltext":""},{"type":"reviewerAgreed","content":"222392064770989029689998385356738629266","date":"2025-04-08T10:55:31+00:00","index":"hide","fulltext":""},{"type":"reviewersInvited","content":"","date":"2025-04-08T09:38:43+00:00","index":"","fulltext":""},{"type":"checksComplete","content":"","date":"2025-04-05T03:53:50+00:00","index":"","fulltext":""},{"type":"submitted","content":"Scientific Reports","date":"2025-03-27T10:37:22+00:00","index":"","fulltext":""}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"scientific-reports","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":false,"externalIdentity":"scirep","sideBox":"Learn more about [Scientific Reports](http://www.nature.com/srep/)","snPcode":"","submissionUrl":"","title":"Scientific Reports","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"stoa","reportingPortfolio":"Scientific Reports","inReviewEnabled":true,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"3e826a68-a65a-4fbd-b86d-525056f4505b","owner":[],"postedDate":"April 10th, 2025","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"published-in-journal","subjectAreas":[{"id":46906333,"name":"Earth and environmental sciences/Climate sciences/Palaeoclimate"},{"id":46906334,"name":"Physical sciences/Chemistry/Energy"},{"id":46906335,"name":"Earth and environmental sciences/Environmental sciences/Environmental chemistry/Geochemistry"},{"id":46906336,"name":"Physical sciences/Chemistry/Inorganic chemistry/Bioinorganic chemistry"},{"id":46906337,"name":"Physical sciences/Energy science and technology/Fossil fuels/Crude oil"}],"tags":[],"updatedAt":"2025-05-12T16:09:13+00:00","versionOfRecord":{"articleIdentity":"rs-5449239","link":"https://doi.org/10.1038/s41598-025-99832-w","journal":{"identity":"scientific-reports","isVorOnly":false,"title":"Scientific Reports"},"publishedOn":"2025-05-08 15:56:51","publishedOnDateReadable":"May 8th, 2025"},"versionCreatedAt":"2025-04-10 15:09:06","video":"","vorDoi":"10.1038/s41598-025-99832-w","vorDoiUrl":"https://doi.org/10.1038/s41598-025-99832-w","workflowStages":[]},"version":"v1","identity":"rs-5449239","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-5449239","identity":"rs-5449239","version":["v1"]},"buildId":"8U1c8b4HqxoKbykW_rLl7","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

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