Mapping Enzyme Activity in Living Systems by Real-Time Mid-Infrared Photothermal Imaging of Nitrile Chameleons

preprint OA: closed
Full text JSON View at publisher
AI-generated summary by claude@2026-07, 2026-07-14

This study developed nitrile chameleons and real-time mid-infrared photothermal imaging to map enzyme activity in living systems, visualizing caspase-phosphatase cooperation during apoptosis.

One-sentence paraphrase of the abstract; not a substitute for reading it. No clinical advice. How this works

AI-generated deep summary by claude@2026-07, 2026-07-14 · read from full text

The paper develops nitrile (C≡N)-tagged enzyme activity reporters (“nitrile chameleons”) and a real-time mid-infrared photothermal imaging approach to map shifts between enzymatic substrate and product signals with 300 nm spatial resolution. Using this method, the authors quantify relative catalytic efficiency and generate activity distribution maps of different enzymes in living cancer cells, C. elegans, and brain tissues, and they report direct visualization of caspase–phosphatase cooperation during apoptosis. A major caveat explicitly noted is that the work is presented as a preprint and has not yet undergone peer review. This paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Abstract Enzymes are vital components in a variety of physiological and biochemical processes. Participation of various enzyme species are required for many biological events and signaling networks. Thus, spatially mapping the activity of multiple enzymes in a living system is significant for elucidating enzymatic functions in health and connections to diseases. Here, we report the development of nitrile (C≡N)-tagged enzyme activity reporters, named nitrile chameleons for the shifted peak between substrate and product. By real-time mid-infrared photothermal imaging of the enzymatic substrates and products at 300 nm resolution, our approach can map the activity distribution of different enzymes and quantitate the relative catalytic efficiency in living cancer cells, C. elegans, and brain tissues. An important finding is the direct visualization of caspase-phosphatase cooperation during apoptosis. Our method is generally applicable to a broad category of enzymes and will advance the discovery of potential targets for diagnosis and drug development.
Full text 14,150 characters · extracted from preprint-html · click to expand
Mapping Enzyme Activity in Living Systems by Real-Time Mid-Infrared Photothermal Imaging of Nitrile Chameleons | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Mapping Enzyme Activity in Living Systems by Real-Time Mid-Infrared Photothermal Imaging of Nitrile Chameleons Ji-Xin Cheng, Hongjian He, Jiaze Yin, Mingsheng Li, Xinyan Teng, and 4 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-2592139/v1 This work is licensed under a CC BY 4.0 License Status: Published Journal Publication published 08 Jan, 2024 Read the published version in Nature Methods → Version 1 posted You are reading this latest preprint version Abstract Enzymes are vital components in a variety of physiological and biochemical processes. Participation of various enzyme species are required for many biological events and signaling networks. Thus, spatially mapping the activity of multiple enzymes in a living system is significant for elucidating enzymatic functions in health and connections to diseases. Here, we report the development of nitrile (C≡N)-tagged enzyme activity reporters, named nitrile chameleons for the shifted peak between substrate and product. By real-time mid-infrared photothermal imaging of the enzymatic substrates and products at 300 nm resolution, our approach can map the activity distribution of different enzymes and quantitate the relative catalytic efficiency in living cancer cells, C. elegans, and brain tissues. An important finding is the direct visualization of caspase-phosphatase cooperation during apoptosis. Our method is generally applicable to a broad category of enzymes and will advance the discovery of potential targets for diagnosis and drug development. Biological sciences/Biological techniques/Imaging/Molecular imaging Biological sciences/Biochemistry/Enzymes Full Text Additional Declarations There is NO Competing Interest. Supplementary Files SIMIPimagingnitrilechameleons.pdf Ocar5step150nm8Hzframe.avi Supplementary video 1 ProjectionsofZ12163.avi Supplementary video 2 ProjectionsofZ12174.avi Supplementary video 3 Cite Share Download PDF Status: Published Journal Publication published 08 Jan, 2024 Read the published version in Nature Methods → Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-2592139","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":179694822,"identity":"c79ca5ef-0eb9-4e96-92f6-e09f743fc235","order_by":0,"name":"Ji-Xin Cheng","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAAtElEQVRIiWNgGAWjYBACxgYGNhAtZwAieUjRYky8FiAAa0ncQLQW5hnJzx583FGbvl0igfHB2zZiHNZzzNxw5pnjuTtnJDAbziVKS3sPmzRv27HcDTcSQAxitDTzsEn/bTuWbnAjgf03cVpAtjC21SQAtbAxE6el55iZZG/bAcOdPQ+bJeecI0KLITDEJH621cmbsycf/PCmjBgtDWDqMAM4VokC8hCqjjjVo2AUjIJRMDIBAGsoNhrtVu8fAAAAAElFTkSuQmCC","orcid":"https://orcid.org/0000-0002-5607-6683","institution":"Boston University","correspondingAuthor":true,"prefix":"","firstName":"Ji-Xin","middleName":"","lastName":"Cheng","suffix":""},{"id":179694823,"identity":"4cf08c55-be57-4f65-b51d-f970b60f0543","order_by":1,"name":"Hongjian He","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Hongjian","middleName":"","lastName":"He","suffix":""},{"id":179694824,"identity":"17a5c975-a5a8-433c-91d1-8f260281cc5e","order_by":2,"name":"Jiaze Yin","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Jiaze","middleName":"","lastName":"Yin","suffix":""},{"id":179694825,"identity":"5b12d2e8-ab49-4ac4-ae8f-a94302145160","order_by":3,"name":"Mingsheng Li","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Mingsheng","middleName":"","lastName":"Li","suffix":""},{"id":179694826,"identity":"f83b572e-0e64-41ff-8e3e-2bd7703b3754","order_by":4,"name":"Xinyan Teng","email":"","orcid":"https://orcid.org/0000-0003-4615-7524","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Xinyan","middleName":"","lastName":"Teng","suffix":""},{"id":179694827,"identity":"d55074fa-313e-4996-8b6d-878802332797","order_by":5,"name":"Meng Zhang","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Meng","middleName":"","lastName":"Zhang","suffix":""},{"id":179694828,"identity":"3b73a185-4692-4fef-ad3c-69b1ac0a4180","order_by":6,"name":"Yueming Li","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Yueming","middleName":"","lastName":"Li","suffix":""},{"id":179694829,"identity":"988ed1e2-d4c9-437a-9c54-2e05c29c17d0","order_by":7,"name":"Zhiyi Du","email":"","orcid":"","institution":"Boston University","correspondingAuthor":false,"prefix":"","firstName":"Zhiyi","middleName":"","lastName":"Du","suffix":""},{"id":179694830,"identity":"5ec2ecc7-8d6c-47d3-a8b2-6bdd40de7a30","order_by":8,"name":"Bing Xu","email":"","orcid":"https://orcid.org/0000-0002-4639-387X","institution":"Brandeis University","correspondingAuthor":false,"prefix":"","firstName":"Bing","middleName":"","lastName":"Xu","suffix":""}],"badges":[],"createdAt":"2023-02-15 20:30:41","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-2592139/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-2592139/v1","draftVersion":[],"editorialEvents":[{"content":"https://doi.org/10.1038/s41592-023-02137-x","type":"published","date":"2024-01-08T05:00:00+00:00"}],"editorialNote":"","failedWorkflow":false,"files":[{"id":49355630,"identity":"3ac27015-2e0d-4bad-bc85-2b14e0699df2","added_by":"auto","created_at":"2024-01-09 08:05:46","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":1847890,"visible":true,"origin":"","legend":"","description":"","filename":"ManuscriptMIPimagingnitrilechameleons.pdf","url":"https://assets-eu.researchsquare.com/files/rs-2592139/v1_covered_84b195bd-4c86-4346-863b-ad81705c9aeb.pdf"},{"id":33602432,"identity":"79e8c322-e402-4341-9c09-e217addf645f","added_by":"auto","created_at":"2023-03-01 05:40:28","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"supplement","size":1578252,"visible":true,"origin":"","legend":"","description":"","filename":"SIMIPimagingnitrilechameleons.pdf","url":"https://assets-eu.researchsquare.com/files/rs-2592139/v1/81726a2c81b5856d3122f83e.pdf"},{"id":33602434,"identity":"7ddd9dcb-6394-4b5e-9eed-c22a5fb735c1","added_by":"auto","created_at":"2023-03-01 05:40:28","extension":"avi","order_by":2,"title":"","display":"","copyAsset":false,"role":"supplement","size":6116388,"visible":true,"origin":"","legend":"\u003cp\u003eSupplementary video 1\u003c/p\u003e","description":"","filename":"Ocar5step150nm8Hzframe.avi","url":"https://assets-eu.researchsquare.com/files/rs-2592139/v1/3bfd3418c6ee7363ad3562e3.avi"},{"id":33602435,"identity":"0770a654-0eb9-4cbf-8eb9-62b979baaa41","added_by":"auto","created_at":"2023-03-01 05:40:28","extension":"avi","order_by":3,"title":"","display":"","copyAsset":false,"role":"supplement","size":3463782,"visible":true,"origin":"","legend":"\u003cp\u003eSupplementary video 2\u003c/p\u003e","description":"","filename":"ProjectionsofZ12163.avi","url":"https://assets-eu.researchsquare.com/files/rs-2592139/v1/1a3d7e8bb4c90aca9a034504.avi"},{"id":33602824,"identity":"3304b966-f82d-40de-8567-5d87d8d66292","added_by":"auto","created_at":"2023-03-01 05:48:28","extension":"avi","order_by":4,"title":"","display":"","copyAsset":false,"role":"supplement","size":3926090,"visible":true,"origin":"","legend":"\u003cp\u003eSupplementary video 3\u003c/p\u003e","description":"","filename":"ProjectionsofZ12174.avi","url":"https://assets-eu.researchsquare.com/files/rs-2592139/v1/3aa2c99d9d5ed684fd9ff272.avi"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Mapping Enzyme Activity in Living Systems by Real-Time Mid-Infrared Photothermal Imaging of Nitrile Chameleons","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"","lastPublishedDoi":"10.21203/rs.3.rs-2592139/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-2592139/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Enzymes are vital components in a variety of physiological and biochemical processes. Participation of various enzyme species are required for many biological events and signaling networks. Thus, spatially mapping the activity of multiple enzymes in a living system is significant for elucidating enzymatic functions in health and connections to diseases. Here, we report the development of nitrile (C≡N)-tagged enzyme activity reporters, named nitrile chameleons for the shifted peak between substrate and product. By real-time mid-infrared photothermal imaging of the enzymatic substrates and products at 300 nm resolution, our approach can map the activity distribution of different enzymes and quantitate the relative catalytic efficiency in living cancer cells, C. elegans, and brain tissues. An important finding is the direct visualization of caspase-phosphatase cooperation during apoptosis. Our method is generally applicable to a broad category of enzymes and will advance the discovery of potential targets for diagnosis and drug development.","manuscriptTitle":"Mapping Enzyme Activity in Living Systems by Real-Time Mid-Infrared Photothermal Imaging of Nitrile Chameleons","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2023-03-01 05:40:23","doi":"10.21203/rs.3.rs-2592139/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"nature-methods","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"nmeth","sideBox":"Learn more about [Nature Methods](http://www.nature.com/nmeth)","snPcode":"","submissionUrl":"","title":"Nature Methods","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Nature Research","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"7b8d7046-fa95-4404-b580-cf31174b77b3","owner":[],"postedDate":"March 1st, 2023","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"published-in-journal","subjectAreas":[{"id":19557492,"name":"Biological sciences/Biological techniques/Imaging/Molecular imaging"},{"id":19557493,"name":"Biological sciences/Biochemistry/Enzymes"}],"tags":[],"updatedAt":"2024-01-09T08:05:35+00:00","versionOfRecord":{"articleIdentity":"rs-2592139","link":"https://doi.org/10.1038/s41592-023-02137-x","journal":{"identity":"nature-methods","isVorOnly":false,"title":"Nature Methods"},"publishedOn":"2024-01-08 05:00:00","publishedOnDateReadable":"January 8th, 2024"},"versionCreatedAt":"2023-03-01 05:40:23","video":"","vorDoi":"10.1038/s41592-023-02137-x","vorDoiUrl":"https://doi.org/10.1038/s41592-023-02137-x","workflowStages":[]},"version":"v1","identity":"rs-2592139","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-2592139","identity":"rs-2592139","version":["v1"]},"buildId":"_2-kVJe1T_tPrBINL-cwx","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00