Large Stimuli-Responsive Azobenzene Macrocycles as Functional Cavitands: Synthesis and Detection by NMR and MS Methods

preprint OA: closed
Full text JSON View at publisher
AI-generated summary by claude@2026-07, 2026-07-16

Researchers synthesized and characterized novel azobenzene macrocycles using MS and NMR, finding that these photo-responsive molecules, especially a smaller 10-aromatic-ring variant, exhibit Z-to-E isomerization upon irradiation.

One-sentence paraphrase of the abstract; not a substitute for reading it. No clinical advice. How this works

AI-generated deep summary by claude@2026-07, 2026-07-16 · read from full text

The paper reports the synthesis of a series of new stimuli-responsive azobenzene macrocycles containing up to eight switchable repeating units, with macrocycle sizes varying from 10 to 40 aromatic rings depending on reaction conditions, including base equivalents, concentration, reactant addition time, and stirring time. The authors use high-resolution mass spectrometry and ion mobility mass spectrometry to detect and identify the macrocycles in the gas phase, and ^1H diffusion-ordered spectroscopy (DOSY) NMR to probe them in solution, finding that DOSY NMR has limited ability to differentiate between different macrocycle sizes. They further study the Z-to-E photo-switching responsiveness of the smallest isolated macrocycle (2 azobenzene units, 10 aromatic rings) after UV-Vis irradiation and thermal excitation, monitoring changes by UV-Vis absorption and ^1H NMR, with DFT calculations supporting conformational interpretation. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Abstract Azobenzene macrocycles are widely investigated as potential drug delivery systems and as part of molecular machines due to their photo-responsive properties. Herein, we synthesize a series of new azobenzene macrocycles, featuring up to eight switchable repeating units. We study the influence of different reaction conditions, base equivalents, concentration, reactant addition time and stirring time, on the formation of the macrocycles of different sizes, ranging from 10 to 40 aromatic rings in the macrocyclic architectures. High-resolution mass spectrometry and ion mobility (IM) mass spectrometry experiments and 1H and diffusion-ordered spectroscopy (DOSY) NMR are used to detect the presence of the macrocycles in gas phase and solution, respectively. While MS methods lead to the identification of the macrocycles, the differentiation between the different sizes of these macrocycles with DOSY NMR is limited. The responsiveness of the Z-to-E photo-switching of the smallest of the macrocycles, exhibiting 2 azobenzene units and in total 10 aromatic rings, separated with column chromatography, is studied with irradiation experiments, using both UV-Vis light and thermal excitation, and monitoring the sample with UV-Vis absorption and 1H NMR spectroscopy after the excitation. DFT calculations help shed light on the conformation of this isolated species.
Full text 14,739 characters · extracted from preprint-html · click to expand
Large Stimuli-Responsive Azobenzene Macrocycles as Functional Cavitands: Synthesis and Detection by NMR and MS Methods | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Large Stimuli-Responsive Azobenzene Macrocycles as Functional Cavitands: Synthesis and Detection by NMR and MS Methods Helena Roithmeyer, Merle Uudsemaa, Aleksander Trummal, Mari-Liis Brük, and 8 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-2621025/v1 This work is licensed under a CC BY 4.0 License Status: Under Review Version 1 posted You are reading this latest preprint version Abstract Azobenzene macrocycles are widely investigated as potential drug delivery systems and as part of molecular machines due to their photo-responsive properties. Herein, we synthesize a series of new azobenzene macrocycles, featuring up to eight switchable repeating units. We study the influence of different reaction conditions, base equivalents, concentration, reactant addition time and stirring time, on the formation of the macrocycles of different sizes, ranging from 10 to 40 aromatic rings in the macrocyclic architectures. High-resolution mass spectrometry and ion mobility (IM) mass spectrometry experiments and 1 H and diffusion-ordered spectroscopy (DOSY) NMR are used to detect the presence of the macrocycles in gas phase and solution, respectively. While MS methods lead to the identification of the macrocycles, the differentiation between the different sizes of these macrocycles with DOSY NMR is limited. The responsiveness of the Z-to-E photo-switching of the smallest of the macrocycles, exhibiting 2 azobenzene units and in total 10 aromatic rings, separated with column chromatography, is studied with irradiation experiments, using both UV-Vis light and thermal excitation, and monitoring the sample with UV-Vis absorption and 1 H NMR spectroscopy after the excitation. DFT calculations help shed light on the conformation of this isolated species. Physical sciences/Chemistry/Supramolecular chemistry/Molecular capsules Physical sciences/Chemistry/Analytical chemistry/Mass spectrometry Physical sciences/Chemistry/Analytical chemistry/NMR spectroscopy/Solution-state NMR Full Text Additional Declarations There is NO Competing Interest. Supplementary Files AzobenzenemacrocyclesmanuscriptSI.pdf Supporting Information Cite Share Download PDF Status: Under Review Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-2621025","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":179934453,"identity":"b1137dde-576e-41ba-b1cd-ad12e9467a3a","order_by":0,"name":"Helena Roithmeyer","email":"","orcid":"https://orcid.org/0000-0002-6585-5953","institution":"University of Zurich","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Helena","middleName":"","lastName":"Roithmeyer","suffix":""},{"id":179934454,"identity":"aa2bbb5b-84d4-4de8-ae33-ed2e7204db4e","order_by":1,"name":"Merle Uudsemaa","email":"","orcid":"https://orcid.org/0000-0001-9486-4632","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Merle","middleName":"","lastName":"Uudsemaa","suffix":""},{"id":179934455,"identity":"e1db3a7d-1d70-4aee-b048-5448ccbcfcff","order_by":2,"name":"Aleksander Trummal","email":"","orcid":"https://orcid.org/0000-0002-2943-6129","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Aleksander","middleName":"","lastName":"Trummal","suffix":""},{"id":179934456,"identity":"458a41b8-12e6-48e7-9d7b-8a6db4fde5d1","order_by":3,"name":"Mari-Liis Brük","email":"","orcid":"","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Mari-Liis","middleName":"","lastName":"Brük","suffix":""},{"id":179934457,"identity":"3105f4d5-b9a6-48b1-999b-e9616b340247","order_by":4,"name":"Sebastian Krämer","email":"","orcid":"","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Sebastian","middleName":"","lastName":"Krämer","suffix":""},{"id":179934458,"identity":"7ad50ffe-a861-441b-802e-67998b6247f3","order_by":5,"name":"Indrek Reile","email":"","orcid":"https://orcid.org/0000-0003-3278-7947","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Indrek","middleName":"","lastName":"Reile","suffix":""},{"id":179934459,"identity":"984c2522-952b-4387-a93b-e49434cde13f","order_by":6,"name":"Vitalijs Rjabovs","email":"","orcid":"","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Vitalijs","middleName":"","lastName":"Rjabovs","suffix":""},{"id":179934460,"identity":"dba8d991-d709-4720-8e05-eae86ad284ae","order_by":7,"name":"Kirsti Palmi","email":"","orcid":"","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Kirsti","middleName":"","lastName":"Palmi","suffix":""},{"id":179934461,"identity":"c054dd47-7b54-49ba-8555-99079c5cfa77","order_by":8,"name":"Matt Rammo","email":"","orcid":"","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Matt","middleName":"","lastName":"Rammo","suffix":""},{"id":179934462,"identity":"b1721944-8c38-46e8-9d93-64edc2df34f3","order_by":9,"name":"Riina Aav","email":"","orcid":"","institution":"","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Riina","middleName":"","lastName":"Aav","suffix":""},{"id":179934463,"identity":"9192a19b-352a-49c0-bef5-c99aa66b5705","order_by":10,"name":"Elina Kalenius","email":"","orcid":"","institution":"","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Elina","middleName":"","lastName":"Kalenius","suffix":""},{"id":179934464,"identity":"1d88089e-65c4-4cf9-8969-21783400839b","order_by":11,"name":"Jasper Adamson","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAABBklEQVRIiWNgGAWjYBACxgYY6wCYtDEwYD7YgF0tDi1pBgZsifi1IABEy2GglgT8Cpnbjz978HEPgzzf8dPJHz7uOG9szsbcwPChAo/DenLMDWc8YzCceSZ3m+TMM7fNLNsYGxhnnMGjpSGHTZrnAAPjhgO525h5227bGNxvbAAy8Gjpf/5M+s8BBvsN599u/szbds7G4BhjA/Pff3i0zEgwkwZ6PXHDjdwN0rxtB8zAWhABiU3LG3PDngMSyTNvvAX6pS3ZGOSXgz3HcGsx7E9/9uDHARvbvvO5mz98bLMz3M7G/vDBjxo8WhoY2ICUBKroAdwaGBjkGcBaRsEoGAWjYBTgAQDVW1rcic9SNQAAAABJRU5ErkJggg==","orcid":"https://orcid.org/0000-0002-9853-7353","institution":"National Institute of Chemical Physics and Biophysics","correspondingAuthor":true,"submittingAuthor":false,"prefix":"","firstName":"Jasper","middleName":"","lastName":"Adamson","suffix":""}],"badges":[],"createdAt":"2023-02-23 14:36:50","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-2621025/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-2621025/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":33737015,"identity":"e66f3d07-4a09-4fc5-a178-308c2f301a7b","added_by":"auto","created_at":"2023-03-03 09:27:25","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":836732,"visible":true,"origin":"","legend":"Article File","description":"","filename":"Azobenzenemacrocyclesmanuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-2621025/v1/9b0b45d05193c7683f214772.pdf"},{"id":33737014,"identity":"6b21c781-068c-4bfe-83ce-151148ca52b6","added_by":"auto","created_at":"2023-03-03 09:27:25","extension":"pdf","order_by":2,"title":"","display":"","copyAsset":false,"role":"supplement","size":10094626,"visible":true,"origin":"","legend":"Supporting Information","description":"","filename":"AzobenzenemacrocyclesmanuscriptSI.pdf","url":"https://assets-eu.researchsquare.com/files/rs-2621025/v1/892376e2061603dc7687bbb8.pdf"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Large Stimuli-Responsive Azobenzene Macrocycles as Functional Cavitands: Synthesis and Detection by NMR and MS Methods","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"","lastPublishedDoi":"10.21203/rs.3.rs-2621025/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-2621025/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Azobenzene macrocycles are widely investigated as potential drug delivery systems and as part of molecular machines due to their photo-responsive properties. Herein, we synthesize a series of new azobenzene macrocycles, featuring up to eight switchable repeating units. We study the influence of different reaction conditions, base equivalents, concentration, reactant addition time and stirring time, on the formation of the macrocycles of different sizes, ranging from 10 to 40 aromatic rings in the macrocyclic architectures. High-resolution mass spectrometry and ion mobility (IM) mass spectrometry experiments and \u003csup\u003e1\u003c/sup\u003eH and diffusion-ordered spectroscopy (DOSY) NMR are used to detect the presence of the macrocycles in gas phase and solution, respectively. While MS methods lead to the identification of the macrocycles, the differentiation between the different sizes of these macrocycles with DOSY NMR is limited. The responsiveness of the Z-to-E photo-switching of the smallest of the macrocycles, exhibiting 2 azobenzene units and in total 10 aromatic rings, separated with column chromatography, is studied with irradiation experiments, using both UV-Vis light and thermal excitation, and monitoring the sample with UV-Vis absorption and \u003csup\u003e1\u003c/sup\u003eH NMR spectroscopy after the excitation. DFT calculations help shed light on the conformation of this isolated species.","manuscriptTitle":"Large Stimuli-Responsive Azobenzene Macrocycles as Functional Cavitands: Synthesis and Detection by NMR and MS Methods","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2023-03-03 09:27:20","doi":"10.21203/rs.3.rs-2621025/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"communications-chemistry","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"commschem","sideBox":"Learn more about [Communications Chemistry](http://www.nature.com/commschem/)","snPcode":"","submissionUrl":"","title":"Communications Chemistry","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Communications Series","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"fea09db7-b750-4366-bd54-13e2aa0b4e8f","owner":[],"postedDate":"March 3rd, 2023","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"under-review","subjectAreas":[{"id":19580810,"name":"Physical sciences/Chemistry/Supramolecular chemistry/Molecular capsules"},{"id":19580811,"name":"Physical sciences/Chemistry/Analytical chemistry/Mass spectrometry"},{"id":19580812,"name":"Physical sciences/Chemistry/Analytical chemistry/NMR spectroscopy/Solution-state NMR"}],"tags":[],"updatedAt":"2023-03-23T14:26:51+00:00","versionOfRecord":[],"versionCreatedAt":"2023-03-03 09:27:20","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-2621025","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-2621025","identity":"rs-2621025","version":["v1"]},"buildId":"cBFmMYwuxLRRLfASyISRj","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00