Dynamics of Rapid Evolution on the Basis of Phenotypic Adaptation and Ecological Opportunities

preprint OA: closed
Full text JSON View at publisher
AI-generated summary by claude@2026-07, 2026-07-14

This computational model shows that dramatic environmental changes can drive rapid evolution and adaptation due to continuous speciation, extinction, and adaptation within an artificial ecosystem.

One-sentence paraphrase of the abstract; not a substitute for reading it. No clinical advice. How this works

AI-generated deep summary by claude@2026-07, 2026-07-14 · read from full text

The paper investigates how rapid evolution can occur in a computational model of adaptive radiation within an artificial ecosystem, using biogeographic computing where habitats are adaptive surfaces composed of ecological opportunities. It finds that dramatic environmental changes can trigger rapid phenotypic response and rapid adaptation to new opportunities, driven by emergent dynamics characterized by continuous speciation, extinction, and adaptation. A key limitation is that the study is based on a computational/artificial ecosystem framework rather than empirical biological data. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Recent studies have demonstrated that evolution can be observed in a few dozen generations, especially when species occupy a new ecological opportunity due to environmental changes. There are several factors that induce this rapid evolution and are related to the phenotype and its response to the environment. This response is then determined by phenotypic variation, because if patterns of diversity in a population produce a rapid response to an environmental change, then rapid adaptation to the new environment can occur. This paper aims to investigate patterns of evolution of species in an artificial ecosystem, and to highlight some patterns that promote rapid evolution. Understanding how rapid evolution occurs is not only of fundamental importance in understanding evolutionary processes and species conservation, but also to provide support for improving the resolution of certain types of problems, especially those in which the solution is time-variant. To achieve the objectives of this paper, a computational model of Adaptive Radiation was designed using the concepts of Biogeographic Computing, an area of knowledge that studies ecosystems as information processors, a fundamental principle of Natural Computing. Habitats are represented by adaptive surfaces, which in turn are composed of different ecological opportunities. The results show, for example, that dramatic changes in ecosystems can lead to a rapid response and a rapid adaptation to new ecological opportunities, mainly because of the emergent and self-sustaining behaviour promoted by the continuous speciation, extinction and adaptation of species. This emergent dynamic supports the thesis that rapid environmental changes can lead to rapid evolution. This behaviour, in turn, is highly desired when considering time-varying problem solving. If solutions to a problem are changing over time, sometimes it is necessary to rapidly find new solutions.
Full text 13,702 characters · extracted from preprint-html · click to expand
Dynamics of Rapid Evolution on the Basis of Phenotypic Adaptation and Ecological Opportunities | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Research Article Dynamics of Rapid Evolution on the Basis of Phenotypic Adaptation and Ecological Opportunities Rodrigo Pasti, Alexandre Politi, Leandro Nunes de Castro This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-3659536/v1 This work is licensed under a CC BY 4.0 License Status: Published Journal Publication published 02 Mar, 2024 Read the published version in Evolutionary Intelligence → Version 1 posted 7 You are reading this latest preprint version Abstract Recent studies have demonstrated that evolution can be observed in a few dozen generations, especially when species occupy a new ecological opportunity due to environmental changes. There are several factors that induce this rapid evolution and are related to the phenotype and its response to the environment. This response is then determined by phenotypic variation, because if patterns of diversity in a population produce a rapid response to an environmental change, then rapid adaptation to the new environment can occur. This paper aims to investigate patterns of evolution of species in an artificial ecosystem, and to highlight some patterns that promote rapid evolution. Understanding how rapid evolution occurs is not only of fundamental importance in understanding evolutionary processes and species conservation, but also to provide support for improving the resolution of certain types of problems, especially those in which the solution is time-variant. To achieve the objectives of this paper, a computational model of Adaptive Radiation was designed using the concepts of Biogeographic Computing, an area of knowledge that studies ecosystems as information processors, a fundamental principle of Natural Computing. Habitats are represented by adaptive surfaces, which in turn are composed of different ecological opportunities. The results show, for example, that dramatic changes in ecosystems can lead to a rapid response and a rapid adaptation to new ecological opportunities, mainly because of the emergent and self-sustaining behaviour promoted by the continuous speciation, extinction and adaptation of species. This emergent dynamic supports the thesis that rapid environmental changes can lead to rapid evolution. This behaviour, in turn, is highly desired when considering time-varying problem solving. If solutions to a problem are changing over time, sometimes it is necessary to rapidly find new solutions. rapid evolution biogeography biogeographic computing adaptive radiation natural computing Full Text Additional Declarations No competing interests reported. Cite Share Download PDF Status: Published Journal Publication published 02 Mar, 2024 Read the published version in Evolutionary Intelligence → Version 1 posted Editorial decision: Revision requested 20 Dec, 2023 Reviews received at journal 13 Dec, 2023 Reviewers agreed at journal 04 Dec, 2023 Reviewers invited by journal 30 Nov, 2023 Editor assigned by journal 29 Nov, 2023 Submission checks completed at journal 29 Nov, 2023 First submitted to journal 24 Nov, 2023 You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-3659536","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Research Article","associatedPublications":[],"authors":[{"id":254975531,"identity":"a5cf8d24-79e3-4120-a809-6191501c1992","order_by":0,"name":"Rodrigo Pasti","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAA6ElEQVRIiWNgGAWjYHACA4YEGDOhAiFIlBbGhoQzxGphgGlhbCPCVebtzds+PPhlw2DOfvz5g4fz6uR0px1+wPCjALcWmTPHimck9qUxWPbkGDYkbjtsbHY7zYCxB4/DJCRyjBkSew4zGBzIYQRqOZC47XaCAQMPUVrOP3/YkDinDqgl/QPjH0JaEn4AtdxIADqsgRmoJceAGa8tPMeKGRIb0ngsZ7wxnJFwDOSXnILDMvi0sDdvZvzxx0bOnD/9wccfNXVyZrfTNz588we3FjAARgeqSw4Q0AAEfwhF9ygYBaNgFIxoAABblVTORY9GPgAAAABJRU5ErkJggg==","orcid":"","institution":"Somma.ai","correspondingAuthor":true,"prefix":"","firstName":"Rodrigo","middleName":"","lastName":"Pasti","suffix":""},{"id":254975532,"identity":"ecf66cfd-87dd-46d2-9536-dbb9066b6a20","order_by":1,"name":"Alexandre Politi","email":"","orcid":"","institution":"FACULDADE FIPECAFI - Fundação Instituto de Pesquisas Contábeis, Atuariais e Financeiras","correspondingAuthor":false,"prefix":"","firstName":"Alexandre","middleName":"","lastName":"Politi","suffix":""},{"id":254975533,"identity":"c74bad0e-c53d-4368-906c-9fee6aa72da4","order_by":2,"name":"Leandro Nunes de Castro","email":"","orcid":"","institution":"Florida Gulf Coast University","correspondingAuthor":false,"prefix":"","firstName":"Leandro","middleName":"Nunes","lastName":"de Castro","suffix":""}],"badges":[],"createdAt":"2023-11-24 14:29:41","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-3659536/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-3659536/v1","draftVersion":[],"editorialEvents":[{"content":"https://doi.org/10.1007/s12065-024-00915-w","type":"published","date":"2024-03-02T15:01:15+00:00"}],"editorialNote":"","failedWorkflow":false,"files":[{"id":51958171,"identity":"43a93cc4-ba65-45f2-aabc-a7ed62a199d0","added_by":"auto","created_at":"2024-03-04 15:14:11","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":620711,"visible":true,"origin":"","legend":"","description":"","filename":"Dynamicsofrapidevolutionrpastietal.pdf","url":"https://assets-eu.researchsquare.com/files/rs-3659536/v1_covered_1a9f627d-c75d-4efe-b2bb-26f924b823f8.pdf"}],"financialInterests":"No competing interests reported.","formattedTitle":"Dynamics of Rapid Evolution on the Basis of Phenotypic Adaptation and Ecological Opportunities","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"evolutionary-intelligence","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":false,"externalIdentity":"evin","sideBox":"Learn more about [Evolutionary Intelligence](http://link.springer.com/journal/12065)","snPcode":"12065","submissionUrl":"https://submission.nature.com/new-submission/12065/3","title":"Evolutionary Intelligence","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"em","reportingPortfolio":"Springer Hybrid","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"rapid evolution, biogeography, biogeographic computing, adaptive radiation, natural computing","lastPublishedDoi":"10.21203/rs.3.rs-3659536/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-3659536/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003eRecent studies have demonstrated that evolution can be observed in a few dozen generations, especially when species occupy a new ecological opportunity due to environmental changes. There are several factors that induce this rapid evolution and are related to the phenotype and its response to the environment. This response is then determined by phenotypic variation, because if patterns of diversity in a population produce a rapid response to an environmental change, then rapid adaptation to the new environment can occur. This paper aims to investigate patterns of evolution of species in an artificial ecosystem, and to highlight some patterns that promote rapid evolution. Understanding how rapid evolution occurs is not only of fundamental importance in understanding evolutionary processes and species conservation, but also to provide support for improving the resolution of certain types of problems, especially those in which the solution is time-variant. To achieve the objectives of this paper, a computational model of Adaptive Radiation was designed using the concepts of Biogeographic Computing, an area of knowledge that studies ecosystems as information processors, a fundamental principle of Natural Computing. Habitats are represented by adaptive surfaces, which in turn are composed of different ecological opportunities. The results show, for example, that dramatic changes in ecosystems can lead to a rapid response and a rapid adaptation to new ecological opportunities, mainly because of the emergent and self-sustaining behaviour promoted by the continuous speciation, extinction and adaptation of species. This emergent dynamic supports the thesis that rapid environmental changes can lead to rapid evolution. This behaviour, in turn, is highly desired when considering time-varying problem solving. If solutions to a problem are changing over time, sometimes it is necessary to rapidly find new solutions.\u003c/p\u003e","manuscriptTitle":"Dynamics of Rapid Evolution on the Basis of Phenotypic Adaptation and Ecological Opportunities","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2023-12-02 02:47:49","doi":"10.21203/rs.3.rs-3659536/v1","editorialEvents":[{"type":"communityComments","content":0},{"type":"decision","content":"Revision requested","date":"2023-12-20T10:04:11+00:00","index":"","fulltext":""},{"type":"editorInvitedReview","content":"","date":"2023-12-13T15:43:21+00:00","index":"hide","fulltext":""},{"type":"reviewerAgreed","content":"31d9bbe8-f3cf-42b2-9630-856ac3fba192","date":"2023-12-04T19:39:55+00:00","index":"hide","fulltext":""},{"type":"reviewersInvited","content":"","date":"2023-11-30T23:58:15+00:00","index":"","fulltext":""},{"type":"editorAssigned","content":"","date":"2023-11-30T04:23:44+00:00","index":"","fulltext":""},{"type":"checksComplete","content":"","date":"2023-11-30T04:23:44+00:00","index":"","fulltext":""},{"type":"submitted","content":"Evolutionary Intelligence","date":"2023-11-24T14:14:12+00:00","index":"","fulltext":""}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"evolutionary-intelligence","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":false,"externalIdentity":"evin","sideBox":"Learn more about [Evolutionary Intelligence](http://link.springer.com/journal/12065)","snPcode":"12065","submissionUrl":"https://submission.nature.com/new-submission/12065/3","title":"Evolutionary Intelligence","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"em","reportingPortfolio":"Springer Hybrid","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"27af2422-1382-421e-9e57-d3629008cf5e","owner":[],"postedDate":"December 2nd, 2023","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"published-in-journal","subjectAreas":[],"tags":[],"updatedAt":"2024-03-04T15:05:43+00:00","versionOfRecord":{"articleIdentity":"rs-3659536","link":"https://doi.org/10.1007/s12065-024-00915-w","journal":{"identity":"evolutionary-intelligence","isVorOnly":false,"title":"Evolutionary Intelligence"},"publishedOn":"2024-03-02 15:01:15","publishedOnDateReadable":"March 2nd, 2024"},"versionCreatedAt":"2023-12-02 02:47:49","video":"","vorDoi":"10.1007/s12065-024-00915-w","vorDoiUrl":"https://doi.org/10.1007/s12065-024-00915-w","workflowStages":[]},"version":"v1","identity":"rs-3659536","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-3659536","identity":"rs-3659536","version":["v1"]},"buildId":"_2-kVJe1T_tPrBINL-cwx","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00