Abstract
28
The development of neutralizing antibodies (nAb) against SARS-CoV-2, following infection or 29
vaccination, is likely to be critical for the development of sufficient population immunity to drive cessation 30
of the COVID19 pandemic. A large number of serologic tests, platforms and methodologies are being 31
employed to determine seroprevalence in populations to select convalescent plasmas for therapeutic trials, 32
and to guide policies about reopening. However, tests have substantial variability in sensitivity and 33
specificity, and their ability to quantitatively predict levels of nAb is unknown. We collected 370 unique 34
donors enrolled in the New York Blood Center Convalescent Plasma Program between April and May of 35
2020. We measured levels of antibodies in convalescent plasma using commercially available SARS-CoV-36
2 detection tests and in-house ELISA assays and correlated serological measurements with nAb activity 37
measured using pseudotyped virus particles, which offer the most informative assessment of antiviral 38
activity of patient sera against viral infection. Our data show that a large proportion of convalescent plasma 39
samples have modest antibody levels and that commercially available tests have varying degrees of 40
accuracy in predicting nAb activity. We found the Ortho Anti-SARS-CoV-2 Total Ig and IgG high 41
throughput serological assays (HTSAs), as well as the Abbott SARS-CoV-2 IgG assay, quantify levels of 42
antibodies that strongly correlate with nAb assays and are consistent with gold-standard ELISA assay 43
results. These findings provide immediate clinical relevance to serology results that can be equated to nAb 44
activity and could serve as a valuable ‘roadmap’ to guide the choice and interpretation of serological tests 45
for SARS-CoV-2. 46
47
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Introduction
48
In late 2019, a cluster of patients in Wuhan, the capital city of China’s Hubei providence, were 49
reported to be afflicted with a severe respiratory illness of unknown origin.(1, 2) Patients presented with 50
symptoms that included high fever, pneumonia, dyspnea, and respiratory failure. The causative agent was 51
identified to be severe acute respiratory syndrome coronavirus variant 2 (SARS-CoV-2), the 7th coronavirus 52
strain to infect humans to date,(3) and the clinical syndrome was designated coronavirus disease of 2019 53
(COVID19). The pathogenesis of COVID19 is similar to previously documented respiratory distress 54
syndromes caused by related coronaviruses, including the 2005 SARS coronavirus (SARS-CoV) and the 55
middle east respiratory syndrome coronavirus (MERS).(4) However, the greater transmissibility of SARS-56
CoV-2 has enabled a swift global spread that has resulted in substantial mortality. Detection and tracking 57
SARS-CoV-2 spread has been difficult. Moreover, the spectrum of symptomatology observed in SARS-58
CoV-2 infection is wide, ranging from asymptomatic and mild, reminiscent of numerous seasonal 59
infections, including influenza and common cold viruses, all the way to life-threatening respiratory failure 60
that requires intensive care and invasive ventilation. Currently, increased age and comorbidities are the 61
factors most highly predictive of severe of COVID19 disease.(5) 62
The utility of serological tests to identify individuals who have acquired antibodies against SARS-63
CoV-2 is thus recognized as both an indication of the seroprevalence of SARS-CoV-2 infection and, 64
potentially, of immunity afforded to the seropositive individual.(3, 6-8) Seroconversion is determined by 65
detection of antibodies that recognize SARS-CoV-2 antigens. Coronaviruses have 4 major structural 66
proteins: spike (S) protein (including the S1 protein and receptor binding domain (RBD)), nucleocapsid (N) 67
protein, membrane (M) protein and envelope (E) protein.(9) Previous studies of SARS-CoV and MERS 68
found the most immunogenic antigens are the S- and N-proteins,(10) and development of serological tests 69
for SARS-CoV-2 antibodies has focused heavily on these viral proteins. 70
Three major platforms of serological testing have been adopted; 1) enzyme linked immunosorbent 71
assays (ELISA), 2) high-throughput serological assays (HTSA), and 3) lateral flow assays (LFA). ELISAs 72
offer wide flexibility for research laboratories to select virtually any antigen of interest and provide highly 73
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sensitive, quantitative results. HTSAs are more suitable for clinical laboratories and offer limited antigen 74
diversity but allow high-throughput and sensitive, semi-quantitative results. LFAs also offer limited 75
antigen diversity, but function with small volumes (~20µL) of whole blood, plasma or sera and allow rapid 76
(£15 minutes) results at the point of care. The clinical community will undoubtedly employ multiple 77
SARS-CoV-2 serology platforms but a comparative analysis across platforms has not been undertaken. 78
Further, it is currently unknown whether the detection of antibodies that bind these proteins predicts 79
neutralizing activity or protection against infection.(11) 80
Convalescent plasma (CP) transfusion has been recognized as a potential treatment for critically ill 81
COVID19 patients and the New York Blood Center (NYBC) has led the first COVID19 CP donation 82
program in the United States. Using 370 unique CP donor samples deposited in our COVID19 Research 83
Repository (https://nybc.org/covid19repository), we conducted ELISA, HSTA and LFA assays as well as 84
SARS-CoV-2 pseudovirus neutralization assays. We find that CP donors have a wide range of antibody 85
titers measured across multiple COVID19 serological and neutralization assays. Notably, we show that 86
some HTSA and ELISA assays predict neutralizing activity in vitro and may thus serve to predict antiviral 87
activity against SARS-CoV-2 in vivo. 88
Results
89
Characteristics of the NYC CP Donor Population 90
Serological analysis of the CP donors was performed using 370 unique samples collected between 91
April and May of 2020 from the NYC area. CP donors enrolled in the program were required to have tested 92
positive for SARS-CoV-2 by PCR diagnostic tests and be symptom free for at least 2 weeks. To profile CP 93
donors, we cross-referenced donor demographic data to the 2010 U.S. Census database.(12) CP donors had 94
a median age of 41 years (95% CI: 39-44, range 17-75 years,) and showed a gaussian distribution (n=183, 95
r2=0.89) compared to the national median age of 38.2 years in 2018 (Figure 1A). The frequency of male 96
and female CP donors was 45.2% and 54.8%, respectively, and was not statistically different from the 97
national average of 49.2% and 50.8% (Figure 1B). The frequency of ABORh blood group antigens was 98
also largely consistent with the national frequency, with a slightly higher number of A- and O- donors and 99
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slightly lower number of AB+ and B+ donors than expected (Figure 1C). Finally, CP donor ethnicity was 100
largely consistent with the national ethnic composition, with a slightly higher number of multiracial/other 101
donors and lower number of Black/African American donors than expected (Figure 1D). Overall, the 102
composition of NYC CP donors analyzed was reflective of the United States population demographic. 103
Neutralizing Activity of the CP Donor Population 104
Neutralization assays measure how effectively donor plasma or serum can inhibit virus infection of 105
target cells and are the gold standard for measuring the antiviral activity of antibodies. In the case of SARS-106
CoV-2, such assays require in biosafety level 3 (BSL-3) facilities and highly trained personnel. To 107
overcome this limitation and expedite testing, we employed pseudotyped virus assays based on either HIV-108
1 (human immunodeficiency virus type 1) or VSV (vesicular stomatitis virus). Both viruses were 109
engineered to lack their own envelope glycoproteins and to express a luciferase reporter gene. 110
Complementation in trans with the SARS-CoV-2 Spike (S) protein results in the generation of pseudotyped 111
virus particles that are dependent on the interaction between the S protein and its receptor ACE2 112
(angiotensin-converting enzyme 2) for entry into cells.(13) These reporter viruses were used to measure 113
infection of human cells engineered to express ACE2 (HIV-S assay) or expressed endogenous ACE2 114
(VSV-S assay) and to determine the ability of plasma dilutions to inhibit S-dependent virus entry. The NT50 115
values, reflecting the plasma dilution at which virus infection is reduced by 50%, were calculated for each 116
sample (Supplementary Figure 1A). 117
The neutralizing activity of CP donor samples was extremely variable and NT50 values obtained 118
ranged from <50 to over 20,000. The median NT50 values were 390.1 (95% CI: 278.3-499.7) and 450.6 119
(95% CI: 367.7-538.4) for the HIV-S or VSV-S assays, respectively (Figure 2A) and the two assays 120
showed a high degree of correlation (Supplementary Figure 1B-C). Fresh frozen plasma (FFP) samples 121
donated in 2019, before the SARS-CoV-2 outbreak, were used as negative controls (n=10). Importantly, the 122
NT50 values of all FFP samples were £50, which is the highest concentration of plasma used in the 123
neutralization assays and is hence designated as the signal cutoff (S/co) value. Overall, 83.1% and 92.7% of 124
the CP donor samples had detectable neutralization activity using HIV-S and VSV-S assays, respectively 125
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(Figure 2B). Notably, 11.2% and 8.7% of CP donors had NT50 values at or greater than 2000 (40-fold over 126
S/co) using HIV-S and VSV-S, assays respectively while 55.8% and 52% of CP donors had NT50 values at 127
or less than 500 (10-fold over S/co) (Figure 2B). Thus, the majority of CP donors may have relatively 128
modest neutralizing activity and a small proportion of donors have high neutralization activity. 129
NT50 values were not statistically different between blood groups (Figure 2E, Supplementary 130
Figure 1G) or age groups (Figure 2C, Supplementary Figure 1E) and there was no linear correlation of 131
NT50 values with age (Supplementary Figure 1D) in contrast to previous reports.(14) However, in 132
agreement with recent studies,(15) NT50 values of male CP donor samples were ~1.7-fold higher than those 133
from female CP donors using HIV-S and VSV-S assays (Figure 2D and Supplementary Figure 1F, n = 134
195, p = 0.009 and <0.001, median difference 217 and 197, respectively). For CP donors where symptom 135
dates were reported, the time between last symptom and the date of donation was calculated. Interestingly, 136
CP donors 2-3 weeks post symptoms had a statistically significant increase in NT50 values compared to CP 137
donors >3 weeks post-symptom (Figure 2F and Supplementary Figure 1H, n=52, p = 0.03 and 0.04, 138
median difference 426 and 226, respectively). Overall, these data suggest CP donors possess a wide range 139
of neutralizing antibody levels that are proportionately distributed across demographic categories with the 140
exception of a small sex-dependent effect. 141
Serological Test Results of the CP Donor Population 142
Multiple platforms have been deployed to detect seroconversion against SARS-CoV-2. The 143
simplest tests are LFAs, which solubilize antibodies from whole blood, plasma or sera in an aqueous 144
mobile phase which moves across a nitrocellulose membrane coated with anti-human IgG and/or IgM to 145
distinguish between specific classes of immunoglobins while a control band ensures test function. Binding 146
of antibodies to antigen-conjugated enzyme, such as horseradish peroxidase, generates a colored band at 147
the test lines. Analysis of 144 CP donor samples showed that only 79.4% of CP donors tested positive for 148
SARS-CoV-2-specfic IgG antibodies and 24.8% for IgM antibodies (Figure 3A, top). While LFAs are not 149
designed to perform quantitatively, large discrepancies in band intensity between donors (Supplementary 150
Figure 2A) is often presumed to indicate semi-quantitative results. We performed densitometric analysis of 151
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the test bands from LFA cassettes (Supplementary Figure 2B, 2C) and normalized each test to control 152
band intensity. LFAs showed an intensity range of 0% - 99.2% for IgG bands and 0% - 18.5% for IgM 153
bands, with a median intensity of 20% for IgG and <1% for IgM (Figure 3A, bottom). Thus, LFAs have a 154
high degree of variation in band intensity within the CP donor population. 155
HTSA systems offer the advantage of performing semi-quantitative seroconversion assays using 156
clinical laboratory testing infrastructure at large scale. We performed the Ortho-Clinical Diagnostics 157
VITROS SARS-CoV-2 total Ig assay, the VITROS SARS-CoV-2 IgG assay and the Abbott Labs Architect 158
SARS-CoV-2 IgG assay using between 100 and 330 CP donor plasma samples. We found 96.4% and 159
91.0% of CP donor samples were positive using the Ortho total Ig and IgG assays, respectively, and 91.4% 160
were positive using the Abbott IgG assay (Figure 3B). The median value of CP samples using the Ortho 161
total Ig assay was 101 arbitrary units (AU) (n=333, 95% CI: 78.5 – 123, S/co = 1, range 0 to 1000 AU) 162
while that of FFP healthy controls was 0.01 AU (n=8, 95% CI: 0.01 – 0.02). Similarly, the median value of 163
CP samples using the Ortho IgG assay was 11.7 AU (n=100, 95% CI: 8.3 – 16.07, S/co = 1, range 0 to ~30 164
AU). For the Abbott assay, the median value of CP samples was 6.04 AU (n=315, 95% CI: 5.48 – 6.44, 165
S/co = 1.4, range 0 to ~10 AU) while that of FFP healthy controls was 0.02 AU (95% CI: 0.01 – 0.15). 166
These results clearly show HTSA platforms detect a wide variation in antibody levels in the CP donor 167
population and offer greater dynamic range than LFA assays. 168
The gold standard for quantification of antigen-specific antibodies is ELISA assays. Studies of 169
antibody responses during SARS-CoV and MERS outbreaks identified the S- and N-proteins as the 170
dominant antigens. Therefore, we designed three indirect ELISA assays using SARS-CoV-2 recombinant, 171
His-tagged, spike protein S1 domain (S1), spike protein RBD domain (RBD) and nucleocapsid protein (N). 172
We utilized monoclonal antibodies demonstrated to bind antigen in a dose-dependent manner to generate 173
standard curves from which antibody concentrations were calculated and FFP from healthy controls to 174
determine signal cutoffs. Thus, we report our ELISA results as monoclonal antibody (mAb) titers. These 175
ELISA assays showed that 85.2%, 89.1%, and 96.3% of CP donor samples were positive for antibodies 176
against S1, RBD and N antigens, respectively (Figure 3C). Using the S1 ELISA, the median value for CP 177
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donor samples was 445µg/mL (n=285, 95% CI: 342 – 536µg/mL, S/co = 120µg/mL) and for FFP controls 178
100.9µg/mL (n=10, 95% CI: 78 – 120µg/mL). In the NP ELISA the median value for CP donor samples 179
was 6432µg/mL (n=271, 95% CI: 2811 – 13792µg/mL, S/co = 700µg/mL) while in the RBD ELISA the 180
median value of CP donor samples was 15.6µg/mL (n=43, 95% CI: 12.55 – 25.6µg/mL, S/co = 4µg/mL). 181
Notably, the range of S1 and NP-binding antibody concentrations observed in the ELISAs was extreme, 182
constituting a 1,000-fold difference in titers within the CP donor population. Taken together, these data 183
demonstrate that CP donors have a wide range of concentrations of antibodies specific to immunogenic 184
SARS-CoV-2 antigens, as measured across multiple serological platforms. 185
Correlation of Serology Tests with Neutralizing Activity 186
It is not logistically feasible to implement neutralization assays as a measurement of antiviral 187
antibodies at a scale of the general population. While quantification of seroconversion is practiced, 188
controlled studies that determine the relationship between quantitative SARS-CoV-2 serology test results 189
and neutralizing activity is sparse. We examined the correlation between serology and neutralization assays 190
in the CP donor samples (Figure 4A, Supplementary Figure 3A, Supplementary Figure 4C). As 191
expected, S1 ELISA titers showed a positive linear regression with NT50 values (r2 = 0.35) while the RBD 192
ELISA titers showed slightly higher linearity (r2 = 0.38), commensurate with the fact that the RBD is a key 193
target for neutralizing antibodies. Conversely, NP ELISA titers showed a comparatively lower degree of 194
linear regression with neutralization activity (r2 = 0.09). By comparison, both the Ortho HTSA total Ig 195
assay and the IgG assay showed higher (r2 = 0.45 for both) while the Abbott HTSA IgG assay showed 196
lower linear regression with neutralization activity (r2 = 0.24). Although Ortho HTSAs and the Abbott 197
HTSA IgG platforms quantify antibodies against S1 and NP antigens, respectively, a linear regression of 198
r2=0.33 was calculated between these two HTSAs (Supplementary Figure 3B). As expected, linear 199
regression between the Ortho total Ig and IgG assay was strong (r2 = 0.72) since the two assays measure the 200
same epitope. LFA IgG densitometry measurements showed the poorest correlation with neutralization 201
activity (r2 = 0.22). 202
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Correlation between serological results and neutralization activity was also examined using the non-203
parametric Spearman test that does not assume linear dependence (Figure 4B). As expected, a high 204
correlation between the HIV-S and VSV-S neutralization assays was obtained (r=0.89). The Ortho and 205
Abbott HTSA platforms exhibited the highest degree of correlation with neutralization among the serology 206
assays tested (r = 0.75 and 0.72, respectively for the HIV-S assay; 0.70 and 0.69 for the VSV-S assay). The 207
S1, RBD, and NP ELISAs also showed a high degree of correlation, particularly with the HIV-S 208
neutralization assay (r = 0.69, 0.65, and 0.65) while the LFA IgG and IgM assay showed the poorest 209
correlation (r = 0.56, 0.41). Taken together, the data demonstrate that all quantitative serological assays 210
correlate to some degree with neutralization activity. However, HTSA and S1 ELISA assays that measure 211
anti-spike protein antigens have the highest predictive value as a surrogate for pseudovirus neutralization 212
assays. Importantly, correlation between HTSA scores and NT50 values suggest presumptive ranges of 213
neutralizing activity based on ranges of HTSA values (Figure 4C, Supplementary Figure 4A). 214
While ELISA assays revealed S1 and N antibody titers correlated with each other, these titers were 215
not always proportional among CP donor samples. To examine the coincidence of S1 and NP antibody 216
titers and using FFP plasma samples as negative controls, we categorized S1 and N antibody titers that fell 217
below S/co values as ‘negative’ and titers greater 10-fold over S/co as ‘high’ (Supplementary Figure 4B). 218
Using 241 CP donor samples that were assayed with both the S1 and N ELISA assays, we found that 81% 219
of donors were double positive (DP), while 16% of samples were single positive (14% N and 2% S1, 220
respectively) (Figure 4D). Only 2.5% of CP donors were double negative for S1 and NP antibodies. Within 221
the double positive population, we found that 23% of samples were DPhigh while 5% and 30% of samples 222
were only S1high or Nhigh and the remaining 42% were DPlow. We then examined the distribution of NT50 223
values from the HIV-S neutralization assay within these populations (Figure 4E). Notably, DN samples 224
showed NT50 values at the S/co observed for FFP healthy control samples while DPlow samples had 225
relatively low NT50 values (median value 327, 95% CI: 186 – 444). Importantly, the DPhigh donors had 226
NT50 values that were 7-fold higher than DPlow donors (median value 2130). Additionally, NT50 values in 227
the Nhigh and S1high groups were 2.5- and 4-fold higher than those of the DPlow group. 228
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Finally, we sought to determine if the frequency of peripheral blood immune cells varied as a 229
function of antibody titer. We stained peripheral blood mononuclear cells (PBMCs) isolated from CP donor 230
buffy coats for classical surface markers associated with B-cell or T-cell populations (Supplementary 231
Figure 5A, 5B). We examined T cell subsets including T central memory (CD45RO+CD62L+) and T 232
effector memory (TEM; CD45RO+CD62Lneg) while B cell (CD20+) subsets analyzed included memory B 233
cells (CD27+CD24+), plasmablasts (CD24negCD38hiCD138neg) and the more mature plasma cells 234
(CD24negCD38hiCD138+) (Supplementary Figure 5C). We found statistically significant differences in 235
naïve CD4 and CD8 T-cell populations in donors with high S1 ELISA titers compared to those with low 236
titer. Decrease in CD24+CD27+ memory B cells was detected in individuals with higher anti-S titers. 237
Although the cause of this lower frequency is not known, it could raise the possibility that individuals with 238
reduced memory B cells may develop a less robust antibody response with future infections. Although our 239
phenotypic analysis of B and T cell compartments was limited, these data suggest phenotypic differences in 240
canonical B and T cell populations are insufficient to explain the large differences in antibody titers or 241
neutralization activity observed in CP donors and warrants future studies designed to study B and T cell 242
function from individual donors. 243
Discussion
244
Demographic limitations of the CP donor population 245
Recent studies have noted a disproportion in COVID19 morbidity and mortality among minority 246
communities.(16) In this study, of the 370 CP samples analyzed, only 204 donors (55%) elected to identify 247
ethnicity, representing the least reported demographic category we collected. Nevertheless, we did not 248
observe a significant difference in nAb or serology results as a function of any demographic metric, 249
including ethnicity. Although we showed that the CP donor samples analyzed in this study comprised a 250
relatively normal distribution of demographic indicators, based on the U.S. census data, we acknowledge 251
that some factors, including ethnicity, are underrepresented in this cohort and limit the interpretation of the 252
study beyond the population aggregate. The potential explanations of this phenomenon are complex and 253
extend beyond the scope of this study.(17) The blood banking community is continuously working to 254
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recruit minority donors, who are consistently underrepresented amongst regular blood donors.(18) Efforts 255
to increase public participation in local blood and CP donor programs would both improve blood product 256
diversity of transfusion products and strengthen the rigor of epidemiological disease. Thus, studies 257
designed to characterize serological responses to COVID19 specifically in minority groups are warranted 258
and necessary to augment our current understanding of the pandemic. 259
Seroconversion assays of the population 260
Quantification of antiviral antibodies in recovered individuals is an important metric for 261
determining population immunity conferred by exposure to SARS-CoV-2. Our study suggests that most 262
New York City convalescent plasma donors have antibodies against SARS-CoV-2. Indeed, our data 263
demonstrate that the HTSA, including Ortho and Abbot assays, which have received EUA from the FDA, 264
are well suited to quantify a wide range of antibody titers and reported that 91 – 96.4% of the CP 265
population possesses detectable SARS-CoV-2 antibodies. LFAs performed less well, and individuals with 266
low antibody titers scored weakly positive or negative in LFAs. Such outcomes could be interpreted 267
incorrectly, thus increasing the rate of false negative results. Ultimately, studies that accurately document 268
SARS-CoV-2 seroprevalence in diverse populations will require highly sensitive, high quality assays such 269
as HSTA or ELISA to be reliable. 270
Correlation between serological assay measurements and neutralizing activity 271
Since patient recovery often precedes the development of efficacious and safe therapeutics, a 272
longstanding treatment strategy for infectious diseases is passive antibody transfer. Therefore, refining 273
strategies to improve CP infusion efficacy benefits both the current treatment options of COVID-19 and 274
will inform the medical community for future pandemics. Our serological analyses are consistent with 275
previous publications that show a considerable range in antibody titers in recovered COVID19 patients.(19) 276
However, this study provides a comprehensive analysis of the correlation of quantitative serological test 277
values with neutralization activity. Importantly, high dynamic range serological assays, such as the HTSA 278
and S1 ELISA, had a significant linear correlation with neutralization activity. We show, for the first time, 279
the extent to which three widely available SARS-CoV-2 HTSAs correlated to nAb activity as well as to 280
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each other, providing the clinical and scientific community with a comprehensive overview of clinical 281
serology test performance. To this end, investigators from the Mayo Clinic’s COVID-19 Expanded Access 282
Program (EAP) performed an exploratory analysis on the efficacy of CP as a therapeutic agent using data 283
from over 35,000 transfusions.(20) Although the study showed uncertainty as to the statistical significance 284
of effect, the authors noted that patients transfused with high antibody titer CP units, quantified by the 285
Ortho IgG assay, showed a notable reduction in the odds ratio of mortality at both 7 and 30 days after 286
transfusion. These data support the assertion that antibody quantification of CP units using high dynamic 287
range HSTA assays may further improve therapeutic options for COVID-19 and, perhaps, future pandemic 288
responses. This knowledge will also be necessary for deriving potential serologic correlates of 289
protection,(21) and may aid in predicting immunity at the individual and population levels.(15) 290
Yet, the levels of plasma neutralizing activity required to prevent SARS-CoV-2 re-infection are 291
currently unknown. Anecdotal results have been reported for seasonal coronavirus experimental infection 292
studies. For example, one study of 229E HCoV found a positive correlation between pre-infection antibody 293
titer and neutralization activity with symptom clinical severity.(22) In another study, 7 of 8 individuals with 294
low neutralizing titers excreted virus upon re-exposure, compared to only 1 of 4 subjects with higher 295
titers.(23) However, the conclusions of these studies are not directly comparable to the current SARS-CoV-296
2 pandemic. As such, the necessity of human epidemiological or vaccination studies are necessary to 297
determine the minimum threshold of neutralizing activity necessary to prevent SARS-CoV-2 re-infection. 298
Conversely, sub-neutralizing antibody levels have been reported to facilitate, rather than inhibit, viral entry 299
of the some coronaviruses in vitro, through antibody dependent enhancement (ADE).(24-26) While ADE 300
dependent replication has not been demonstrated to occur in SARS-CoV, viral uptake into macrophages via 301
antibody association with Fc receptors does induce IL-6 and TNFa cytokines which may promote 302
inflammation and tissue damage.(27) Insights gained from an accurate analysis of antibody levels and 303
neutralization activity in SARS-CoV-2-infected individuals will help address these important questions and 304
the corresponding health consequences. 305
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A key biological question is: what underlies the large variation in antibody titers (neutralizing or 306
otherwise) observed in CP donors? Numerous variables, including the effectiveness of innate immune 307
responses, SARS-CoV-2 exposure dose, anatomical site of initial infection, and partial cross-reactive 308
immunity conferred by prior seasonal coronavirus infection, could all impart variation on the amount and 309
dissemination of SARS-CoV-2 antigen. Variation in the exposure of the adaptive immune system to SARS-310
CoV-2 antigen would, in turn, likely impact the magnitude of immune responses. Our observation that the 311
levels of antibody to N, as well as S, correlates with S-specific neutralizing titer suggests that quantitative 312
differences in the overall adaptive immune response to SARS-CoV-2, rather than intrinsic differences in 313
the ability of individuals to mount neutralizing responses, at least partly explains the large variation in 314
neutralizing capacity of CP. This notion is consistent with recent findings that all individuals examined, 315
generated very similar, potent monoclonal SARS-CoV-2 neutralizing antibodies, but at very different 316
levels.(15) 317
Future utility for vaccine and CP donor strategies 318
The development of efficacious vaccines against SARS-CoV-2 may be necessary for ending the 319
COVID19 pandemic. Clinical trials will undoubtedly include a battery of serological and neutralization 320
assays in test subjects to assess candidate vaccine efficacy. Surrogate serology tests to neutralizing activity 321
could help to rapidly inform as to the likely effectiveness, as well as immunogenicity, of vaccines against 322
SARS-CoV-2. To this end, real-time analyses using scalable HTSA testing platforms is effectuate while 323
future studies are conducted to more precisely measure in vivo neutralization activity. 324
Finally, the utility of convalescent plasma in the treatment of infection has been recognized since 325
the turn of the 20th century.(28) CP transfusion is thought to be effective through passive immunization, 326
specifically the transfer of neutralizing antibodies from a recovered individual to another individual 327
manifesting life-threatening symptoms.(29, 30) Previously CP therapy has been used to treat both SARS 328
and MERS,(31) and currently can be rapidly deployed against SARS-CoV-2 while other therapies are 329
under development.(32) Nevertheless, many questions remain regarding the optimal antibody levels 330
necessary to treat patients at varying stages of COVID19 disease. Accurate quantification using serological 331
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assays that predict neutralization activity may improve clinical outcomes through refinement of CP unit 332
selection for patients of varying symptomatology. In summary, we demonstrate that HTSA and S1 ELISA 333
assays show the strongest correlation with neutralization activity and may serve to predict the degree of 334
antiviral antibody activity present in recovered patients or vaccine recipients. 335
336
Authors’ Contributions 337
LLL conceptualized the study, designed and performed serology experiments and managed the collection 338
of data, figures and statistical analyses. LLL, PB, TH and CDH co-wrote the manuscript. TH, PB, FM, YW 339
and FS designed and performed the neutralization assays. BR, DJ, WB, SJ, JP, MR and NT performed most 340
of the serology experiments. CG, MP, ES and HZ processed and preserved donor plasma and PBMCs. DS 341
coordinated donor demographic information. KY contributed to PBMC flow cytometry and interpretation. 342
DJ and BR contributed equal authorship to the manuscript. LLL, PB and TH contributed equal 343
corresponding authorship. 344
345
Acknowledgements
346
We thank Jill Alberigo, Amanda Brites and Kelly Brightman from Rhode Island Blood Center for their help 347
with performing the Ortho Anti-SARS-CoV-2 Total Test and the Abbott SARS-CoV-2 IgG test. We thank 348
Chockalingam Palaniappan and Paul Contestable for their assistance with performing the Ortho Anti-349
SARS-CoV-2 IgG Test. We thank Haidee Chen for assistance with editing the manuscript. 350
351
Conflicts of Interest 352
The authors declare no conflicts of interest. 353
354
Role of the Funding Source 355
Funding source for TH, PBD, FM, YW and FS were NIH R01AI78788 and R37AI064003. Funding 356
sources did not have a role in the writing of the manuscript or the decision to submit for publication. 357
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358
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Methods
359
Cell lines 360
Huh7.5 cells were a gift from Charles Rice (33). The 293T/ACE2cl.13 cell clone was generated by 361
transducing 293T cells (ATCC ® CRL-3216™) with a CSIB -based ACE2 lentivirus expression vector 362
containing a cDNA encoding a catalytically inactive ACE2 mutant. Single cell clones were isolated by 363
limiting dilution and one clone (293T/ACE2cl.13) was used in these studies. 364
Collection of CP donor information, isolation of convalescent plasma and PBMCs 365
Disclosure of demographic information was elective at the time of donation and showed that of the 370 CP 366
donors analyzed, 71.1% indicated age, 95.4% indicated blood type, 95.6% indicated sex and 55.1% indicated 367
ethnicity. To examine the demographic characteristics within the convalescent plasma (CP) donor population, 368
we used the 2010 U.S. Census demographic data as expected frequencies. Plasma was isolated from EDTA- 369
anticoagulated human whole blood sa mples. Samples were shipped from the NYBC Sample Management 370
Facility overnight at 4C and centrifuged for 5 min at 500 xg to facilitate plasma/cell phase separation. The 371
resulting upper plasma layer was extracted, aliquoted to minimize future freeze -thaw cycles, and stored at -372
80 C. Samples were cryopreserved and stored in the NYBC COVID19 Research Repository 373
(https://nybc.org/covid19repository). 374
Plasmid constructs 375
The env-inactivated HIV-1 reporter construct (pHIV-1NL4-3 ΔEnv-NanoLuc) was generated from a pNL4-3 376
infectious molecular clone (obtained through NIH AIDS Reagent Program, Division of AIDS, NIAID, NIH 377
from Dr Malcolm Martin). It contains a NanoLuc Luciferase reporter gene in place of nucleotides 1-100 of 378
the nef-gene and a 940 bp deletion 3’ to the vpu stop-codon. The rVSVΔG/NG/NanoLuc plasmid was 379
generated by insertion of a cassette containing an mNeonGreen/FMDV2A/NanoLuc luciferase cDNA into 380
rVSVΔG (Kerafast) (PMID: 20709108) between the M and L genes. The pSARS-CoV-2 S-protein 381
expression plasmid containing a C-terminally truncated SARS-CoV-2 S protein (pSARS-CoV2Δ19) was 382
generated by insertion of a synthetic human-codon optimized cDNA encoding SARS-CoV-2 S1 spike protein 383
lacking the C-terminal 19 codons into pCR3.1. An ACE2 lentiviral expression vector was constructed by 384
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inserting a cDNA encoding a catalytically inactive ACE2 mutant into the lentivirus expression vector CSIB 385
(PMID: 30084827). 386
SARS-CoV-2 pseudotype particles 387
To generate (HIV/NanoLuc) -SARS-CoV-2 pseudotype particles, 293T cells were transfected with pHIV -388
1NL4-3 ΔEnv-NanoLuc reporter virus plasmid and pSARS-CoV-2-SΔ19 at a molar plasmid ratio of 1:0.55. The 389
transfected cells were washed twice with PBS the following day, and at 48h after transfection, supernatant 390
was harvested, clarified by centrifugation, passed through a 0.22 µm filter, aliquoted and frozen at -80oC. 391
To generate (VSV/NG/NanoLuc)-SARS-CoV-2 pseudotype particles, 293T cells were infected with 392
recombinant T7-expressing vaccinia virus (vTF7 -3) and transfected with rVSV ΔG/NG/NanoLuc, pBS-N, 393
pBS-P, pBS -L, and pBS -G (PMID: 20709108). At ~24h post transfection the superna tant was collected, 394
filtered and used to infect 293T cells transfected with a VSV -G expression plasmid, for amplification. To 395
prepare stocks of (VSV/NG/NanoLuc)-SARS-CoV-2 pseudotype particles, 293T cells were transfected with 396
pSARS-CoV2Δ19 and infected with the VSV-G complemented rVSVΔG/NG/NanoLuc virus. At 16h later the 397
supernatant was collected, clarified by centrifugation, filtered, pelleted through a 20% sucrose cushion and 398
stored at -80oC. The viral stock was incubated with 20% I1 hybridoma supernatan t (ATCC CRL-2700) for 399
1h at 37oC before use. 400
Neutralization assays 401
To measure neutralizing antibody activity in convalescent plasma, five -fold serial dilutions of plasma were 402
incubated for 1 hour at 37 oC in 96 -well plates with an aliquot of HIV -1 or VSV -based SARS -CoV-2 403
pseudotyped virus containing approximately 1x10 3 infectious units. Thereafter, 100 µl of the plasma/virus 404
mixture was added to target cells (293TAce2 cl.13, or Huh7.5) cells in 96-well plates. Cells were cultured for 405
48h (HIV-1 pseudotype viruses) or 16h (VSV pseudotype viruses). Then, cells were washed twice, lysed and 406
NanoLuc Luciferase activity in lysates was measured using either the Nano -Glo Luciferase Assay System 407
(Promega) and a Modulus II Microplate Multimode reader (Turner BioSystem) or a Glowmax Navigator 408
luminometer (Promega). The half maximal neutralizing titer (NT 50) for plasma, was determined using a 4 -409
parameter nonlinear regression in Prism 8.4 (GraphPad). 410
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Lateral Flow ImmunoAssay (LFA) 411
Lateral flow immunoassays (LFAs) were pro vided by external companies. Assay cartridges contained 412
detection bands for IgG and IgM against SARS-CoV2 specific epitopes as well as an internal positive control. 413
For each assay, 20 µL convalescent plasma or serum was applied to the sample pad, followed by two drops 414
of proprietary running buffer. After 30 minutes, high resolution pictures of the detection zone were taken and 415
saved as .JPEG files. All tests were performed at room temperature. 416
LFA Densitometry Analysis 417
Relative quantification of anti -SARS-CoV-2 IgG and IgM in convalescent plasma samples was performed 418
using built-in gel analysis macros in FIJI (https://fiji.sc/). A rectangular selection covering the detection zone 419
was analyzed using Analyze>Gels>Plot Lanes. Integrated density values were outlined manually and 420
extracted from the resulting plot. Using MS Excel, IgG and IgM values were normalized against the density 421
of the control band. 422
The remaining whole blood cellular phase was supplemented with 2 mL of 35 g/L HSA/DPBS and diluted 423
1:1 with DPBS. Diluted whole blood was layered over 7 mL Ficoll-Paque Premium 1.078 g/mL (GE 424
Healthcare) and centrifuged for 20 minutes at 20C and 400xg without braking. Buffer coats were extracted, 425
counted with AOPI viability stain using the Cellometer Auto2000 (Nexelom Bioscience LLC), and frozen in 426
PBMC freezing media (10% DMSO in Knockout SR). 427
SARS-CoV-2 Binding-Antibody ELISA 428
Flat-well, nickel-coated 96 well ELISA plates (Thermo Scientific) were coated with 2µg/mL of recombinant 429
S1 spike protein, nucleocapsid protein, or Receptor Binding Domain (RBD) spike protein specific to SARS-430
CoV-2 in resuspension buffer (1% Human Serum Albumin in 0.01% PBST) and incubated in a stationary 431
humidified chamber overnight at 4 C. On the day of the assay, plates were blocked for 30 min with ELISA 432
blocking buffer (3% W/V non-fat milk in PBST). Standard curves for both S1 and RBD assays were 433
generated by using mouse anti-SARS-CoV spike protein monoclonal antibody (clone [3A2], ABIN2452119, 434
Antibodies-Online) as the standard. Anti-SARS-CoV-2 Nucleocapsid mouse monoclonal antibody (clone 435
[7E1B], bsm-41414M, Bioss Antibodies) was used as a standard for nucleocapsid binding assays. 436
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Monoclonal antibody standard curves and serial dil utions of convalescent donor plasma were prepared in 437
assay buffer (1% non -fat milk in PBST) and added to blocked plates in technical duplicate for 1 hr with 438
orbital shaking at room temperature. Plates were then washed three times with PBST and incubated fo r 1 hr 439
with ELISA assay buffer containing Goat anti-Human IgA, IgG, IgM (Heavy & Light Chain) Antibody-HRP 440
(Cat. No. ABIN100792, Antibodies-Online) and Goat anti-Mouse IgG2b (Heavy Chain) Antibody-HRP (Cat. 441
No. ABIN376251, Antibodies -Online) at 1:30000 and 1:3000 dilutions, respectively. Plates were then 442
washed three times, developed with Pierce TMB substrate for 5 min, and quenched with 3 M HCl. 443
Absorbance readings were collected at 450 nm. Standard curves were constructed in Prism 8.4 (Graphpad 444
Software Inc.) using a Sigmoidal 4PL Non-Linear Regression (curve fit) model. 445
High-throughput Serology Assays 446
Convalescent donor plasma samples were barcoded and dispatched to Rhode Island Blood Center (RIBC). 447
Samples were analyzed using the Abbott SARS -CoV-2 IgG chemiluminescent microparticle immunoassay 448
with the Abbott Architect i2000SR (Abbott Core Laboratories), as well as the VITROS Immunodiagnostic 449
Products Anti-SARS-CoV-2 Total Test and the Anti-SARS-CoV-2 IgG Test with the VITROS 5600 (Ortho 450
Clinical Diagnostics). All assays were performed by trained RIBC employees according to the respective 451
manufacturer standard procedures. 452
Flow cytometric analysis of PBMCs 453
Cryopreserved PBMCs were thawed, filtered and stained with a B -cell or T -cell antibody cocktail for 3 0 454
minutes in PBS. Cells were washed with PBS and analyzed with a BD LSR Fortessa 4 laser cytometer. 455
Cytometric analysis was performed using RUO FCS Express 7 (DeNovo Software). 456
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463
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Figure 1 538
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Figure 2 543
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Figure 3 548
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Figure 4 552
553
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Figure 1: Demographics of convalescent plasma donors. 555
556
A; Distribution of convalescent plasma donor age (left, blue bars) compared to U.S. population (right, red 557
bars). Dotted line represents Gaussian distribution curve fit. N=263; Pearson’s correlation coefficient. 558
559
B; Distribution of convalescent plasma donor blood group antigen (left, blue bars) compared to U.S. 560
population (right, red bars). N=370, binomial test for discrepancy versus U.S. population; * p < 0.05. 561
562
C; Distribution of convalescent plasma donor sex (blue bars) compared to U.S. population (red bars). N=354, 563
binomial test for discrepancy versus U.S. population. 564
565
D; Distribution of convalescent plasma donor ethnicity (blue bars) compared to U.S. population (right, red 566
bars). N=204, binomial test for discrepancy versus U.S. population; * p<0.05. 567
568
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Figure 2: Neutralizing activity analysis of convalescent plasma donors. 569
570
A; Distribution of neutralization IC 50 values (NT50, reciprocal plasma dilution) of convalescent donor 571
plasma using HIV (red) or VSV pseudovirus (blue) overexpressing the SARS -CoV-2 spike protein (S). 572
573
B; Frequency of convalescent plasma donor NT50 values within indicated groups using HIV-S (top) or VSV-574
S pseudovirus constructs. 575
576
C; Frequency distribution of convalescent plasma HIV -S NT50 values versus age groups. Signal to cutoff 577
(S/co, dotted grey line) and 10x S/co (solid grey line) thresholds are indicated. n=5 -38, Kruskal-Wallis test; 578
* p < 0.05. 579
580
D; Frequency of convalescent plasma donor NT50 values versus sex. Signal to cutoff (S/co, dotted grey line) 581
and 10x S/co (solid grey line) thresholds are indicated. n=190, Mann-Whitney test, ** p < 0.01. 582
583
E; Frequency of convalescent plasma donor NT50 values versus blood group antigen. Signal to cutoff (S/co, 584
dotted grey line) and 10x S/co (solid grey line) thresholds are indicated. n=15-82, Kruskal-Wallis test, * p < 585
0.05. 586
587
F; Frequency of convalescent plasma donor NT50 values versus time (days) since last reported symptom. 588
Signal to cutoff (S/co, dotted grey line) and 10x S/co (solid grey line) thresholds are indicated. n=19 -33, 589
Mann-Whitney t-test, *p < 0.05. 590
591
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Figure 3: Serological analysis of convalescent plasma donors. 592
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A; Frequency of densitometric IgG (left) or IgM (right) results from LFA bands relative to control band. 594
Median values (red band) with 1st and 3rd quartiles (thin red lines) are shown. 595
596
B; Frequency of HTSA results using the total Ig or IgG assays derived from the Ortho Diagnostics platform 597
(left) or Abbott IgG assay platform (right). Results from fresh frozen plasma (FFP) units collected before 598
COVID19 are shown as healthy controls. 599
600
C; Frequency of S1 spike protein (left), Nucleocapsid (NP) protein (center) and RBD spike protein (right) 601
ELISA titer results. Titers reflect concentrations calculated using a mAb standard curve and not absolute 602
plasma concentrations. Median values (red band) with 1st and 3rd quartiles (thin red lines) are shown. 603
604
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Figure 4: Correlation of serology assays versus neutralization activity of convalescent plasma donors. 605
606
A; Linear regression of HIV-S NT50 values (abscissa) versus serological assay values (ordinate). N 607
indicated in each graph, r2 = goodness of fit. 608
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B; Spearman correlation coefficients, r, of neutralization and serological assays. N=137 samples. 610
611
C; Distribution of CP donor sample HTSA scores within indicated HIV-S NT50 groups using Ortho total Ig 612
(left), Ortho IgG (center) or Abbott IgG (right) assays. 613
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D; Frequency of convalescent donor S1 and NP ELISA values defined in C. n=241 samples. 615
616
E; Distribution of NT50 values corresponding to populations defined in C. n=4-51, Kruskall-Wallis test, * 617
p < 0.05, ** p < 0.01. 618
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