Comparison of four light-response models using relative curvature measures of nonlinearity

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Abstract Photosynthetic light response curves serve as powerful mathematical tools for quantitatively describing the rate of photosynthesis of plants in response to changes in irradiance. However, in practical applications, the daunting task of selecting an appropriate nonlinear model to accurately fit these curves persists as a significant challenge. Thus, there arises a need for a method to systematically evaluate the efficacy of such models. In the present study, four distinct nonlinear models, namely Exponential Model (EM), Rectangular Hyperbola Model (RHM), Nonrectangular Hyperbola Model (NHM), and Modified Rectangular Hyperbola Model (MRHM), were used to fit the relationship between light intensity and the rate of photosynthesis across 42 empirical datasets. The goodness of fit for each model was assessed using the root-mean-square error, and relative curvature measures of nonlinearity were employed to assess the nonlinear behavior of the models. In terms of goodness of fit, pairwise difference tests of the root-mean-square error revealed that there was little to choose among the four models, although RHM gave a marginally poorer fit. However, in terms of nonlinear behavior, EM not only provided the most favorable linear approximation performance at the global level, but also exhibited the best close-to-linear behavior at the individual parameter level among the four models across the 42 datasets. Consequently, the results strongly advocate for EM as the most suitable mathematical framework for fitting photosynthetic light response curves. These findings provide insights into the model assessment for nonlinear regression in describing the relationship between the photosynthetic rate and light intensity.
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Comparison of four light-response models using relative curvature measures of nonlinearity | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Comparison of four light-response models using relative curvature measures of nonlinearity Lin Wang, Ke He, David A. Ratkowsky, Peijian Shi This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-4475926/v1 This work is licensed under a CC BY 4.0 License Status: Published Journal Publication published 14 Oct, 2024 Read the published version in Scientific Reports → Version 1 posted 10 You are reading this latest preprint version Abstract Photosynthetic light response curves serve as powerful mathematical tools for quantitatively describing the rate of photosynthesis of plants in response to changes in irradiance. However, in practical applications, the daunting task of selecting an appropriate nonlinear model to accurately fit these curves persists as a significant challenge. Thus, there arises a need for a method to systematically evaluate the efficacy of such models. In the present study, four distinct nonlinear models, namely Exponential Model (EM), Rectangular Hyperbola Model (RHM), Nonrectangular Hyperbola Model (NHM), and Modified Rectangular Hyperbola Model (MRHM), were used to fit the relationship between light intensity and the rate of photosynthesis across 42 empirical datasets. The goodness of fit for each model was assessed using the root-mean-square error, and relative curvature measures of nonlinearity were employed to assess the nonlinear behavior of the models. In terms of goodness of fit, pairwise difference tests of the root-mean-square error revealed that there was little to choose among the four models, although RHM gave a marginally poorer fit. However, in terms of nonlinear behavior, EM not only provided the most favorable linear approximation performance at the global level, but also exhibited the best close-to-linear behavior at the individual parameter level among the four models across the 42 datasets. Consequently, the results strongly advocate for EM as the most suitable mathematical framework for fitting photosynthetic light response curves. These findings provide insights into the model assessment for nonlinear regression in describing the relationship between the photosynthetic rate and light intensity. Biological sciences/Ecology Biological sciences/Plant sciences close-to-linear behavior goodness of fit nonlinear regression parameter-effects curvature photosynthetic light response curves Full Text Additional Declarations No competing interests reported. Supplementary Files SupplementaryMaterials.xlsx Cite Share Download PDF Status: Published Journal Publication published 14 Oct, 2024 Read the published version in Scientific Reports → Version 1 posted Editorial decision: Revision requested 20 Aug, 2024 Reviews received at journal 19 Aug, 2024 Reviews received at journal 17 Aug, 2024 Reviewers agreed at journal 10 Aug, 2024 Reviewers agreed at journal 07 Aug, 2024 Reviewers invited by journal 06 Aug, 2024 Editor assigned by journal 30 Jul, 2024 Editor invited by journal 27 Jun, 2024 Submission checks completed at journal 26 Jun, 2024 First submitted to journal 25 May, 2024 You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. 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