Integrated molecular portraits of breast cancer

Abstract The associated article reports multiomic analysis of breast cancers, where we provided a unique public resource that contributes novel insights into the breast cancer, holding promise for further precision treatment approaches. This protocol not only delineates detailed experimental procedures for sample preparation and data generation but also comprehensive analysis methods for genomics, transcriptomics, proteomics, and metabolomics from breast cancer samples. Furthermore, regarding radiomics and pathomics, the protocol describes the extraction of both radiological and pathological features in detail.