A new genome sequence resource for five invasive fruit flies of agricultural concern: Ceratitis capitata, C. quilicii, C. rosa, Zeugodacus cucurbitae and Bactrocera zonata (Diptera, Tephritidae)

Here, we present novel high quality genome assemblies for five invasive tephritid species of agricultural concern: Ceratitis capitata , C. quilicii , C. rosa , Zeugodacus cucurbitae and Bactrocera zonata (read depths between 65 and 78x). Three assemblies ( C. capitata , C. quilicii and Z. cucurbitae ) were scaffolded with chromosome conformation data and annotated using RNAseq reads. For some species this is the first reference genome available ( B. zonata , C. quilicii and C. rosa ), for others we have published improved annotated genomes ( C. capitata and Z. cucurbitae ). Together, the new references provide an important resource to advance research on genetic techniques for population control, develop rapid species identification methods, and explore eco-evolutionary studies.