The
Increasing evidence demonstrated that epigenetic mechanisms, involved in regulating chromatin state and transcript metabolism, work in conjunction with KLFs to regulate bone remodeling, which results in the formation of a complex gene regulatory network.
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Here, we highlighted recent progress in understanding the epigenetic pathways that regulate the expression and function of KLFs during bone remodeling, and additionally discussed the reciprocal regulation of KLFs on epigenetic regulators, including DNA modification, histone modification, and noncoding RNA (ncRNA).
DNA modification involves chemically altering DNA molecules to regulate gene expression and cellular function, which includes modifications like methylation, hydroxymethylation, and phosphorylation. During bone homeostasis, DNA modification impacts bone formation and absorption by controlling gene expression and signaling pathways in bone cells. Specifically, DNA methylation is intimately associated with cell differentiation and function regulation.
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DNA methylation, a chemical modification process in which S‐adenosylmethionine serving as a methyl donor covalently binds to specific bases on a DNA sequence under the catalysis of DNA methyltransferase (DNMT), is regarded as one of the most representative epigenetic modifications closely related to human development.
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Previous studies have demonstrated that the alterations in promoter can impact the activity of OB and OC, disequilibrating osteogenesis and osteoclastogenesis.
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It has been established that the methylation status contributes to determining cell lineage commitment. Typically, the methylation levels in promoter regions exhibit an inverse correlation with gene expression. Specifically, the promoter regions of osteogenic‐related genes like Runx2 and osteocalcin are found to be completely hypomethylated in BMMSCs,
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while the promoters of other osteogenic lineage‐specific genes, such as ROR2, Dlx5, Runx2, and osterix, become demethylated during osteogenic differentiation, leading to increased gene expression in mRNA level.
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Apart from its known function in osteogenic lineage differentiation, DNA methylation also plays a significant role in osteoclastogenesis. Studies have shown that OC formation is reduced in bone marrow macrophage precursor cells deficient in DNMT3a. Moreover, OC‐specific DNMT3a knockout mice display high bone mass phenotypes and fewer osteoporotic possibilities compared with wild‐type mice.
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Recently, significant advances have been made in the effect of DNA methylation on KLF expression. It has been demonstrated that DNMT3B upregulation plays a role in mediating KLF5 hypermethylation induced by oxidative stress, which ultimately blocks osteogenic differentiation by reducing the expression and nuclear translocation of β‐catenin.
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Yu et al.
111
demonstrated that CUL4B–RING E3 ligase (CRL4B) epigenetically represses KLF4 transcription such as DNA methylation and histone methylation through coordination with enhancer of zeste homolog 2 (EZH2), contributing to bone formation.
Histone modifications include methylation, acetylation, phosphorylation, and so on, among which histone methylation is the most common modification in eukaryotic cells.
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Substantial research has proved that during the differentiation and maturation of OBs and OCs, several genes are modulated by HMTs or histone demethylases, which take central parts in the regulation of histone methylation.
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For instance, Suv39h1, as a methyltransferase, catalyzes the dimethylation or trimethylation of H3K9, leading to its binding to the promoter of Runx2, which inhibits the transcription of Runx2, consequently delaying OB differentiation.
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On the other hand, EZH2 functions as a trimethyltransferase of H3K27 facilitating the formation of H3K27me3 to activate the transcription of the Wnt4 gene in OBs, ultimately promoting osteogenic differentiation.
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Based on previous research, the expression of crucial genes involved in bone homeostasis can be affected by alterations in the level of histone methylation, which has been speculated to be associated with the action of KLFs. It is confirmed that the KLF2 expression is upregulated during osteogenic differentiation, which activates the ATG7 gene via collaboration with H3K27Ac and H3K4me3 in the promoter region of ATG7.
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The extensive trimethylation of histone H3 lysine 4 (H3K4me3) as well as histone H3 lysine 27 (H3K27me3) occupy the promoters of KLF4, which is closely associated with the monocyte‐into‐phagocyte differentiation program.
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Additionally, recent research has demonstrated the role of chromatin in the control of DNA methylation. Inactivated histone methylation, especially trimethylation of H3 at K9, has been proven to promote DNA methylation, which suggests the involvement of chromatin remodeling factors in DNA methylation.
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Further studies are required to determine whether similar regulatory mechanisms occur in OC differentiation.
Maity et al.
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found that KLF2 binds to the promoter region of the autophagic molecule ATG7 through the upregulation of active epigenetic marks H3K27Ac and H3K4me3, thereby inducing mitophagy and altering mitochondrial metabolism during osteoblastic differentiation. Besides, Das et al.
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demonstrated that KLF2 depletion promotes the enrichment of active histone marks H3K9Ac and H4K8Ac and HATs (P300, PCAF) on the MMP‐9 promoter region in monocytes. As mentioned above, KLF4 promotes odontoblastic differentiation by increasing DMP1 expression. A recent study further proved that HDAC3 and P300 are enriched on the promoter region of KLF4 target genes DMP1 and Sp7, and interact with KLF4 in a temporal‐specific manner, ultimately modulating DMP1 and Sp7 transcription and promoting dentinogenesis and odontoblastic differentiation.
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Cancer stem cells (CSCs) play essential roles in tumorigenesis, recurrence, and therapy resistance. The Yicun Wang group identified that KLF11 serves as a negative regulator in sarcoma CSCs and histone acetylation may participate in the detailed modulation process. Mechanistically, KLF11 restrains the stemness of osteosarcoma (OS) by recruiting SIN3A/HDAC to suppress the transcriptional output of yes‐associated protein (YAP)/transcriptional enhanced associate domain (TEAD).
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MicroRNAs (miRNAs) are a family of small ncRNA molecules regulating gene expression by targeting the mRNA at the posttranscriptional level through either mRNA cleavage or translational inhibition via direct binding the 3′ untranslated region (3′‐UTR), thereby controlling cell proliferation, differentiation, and apoptosis.
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Recent studies demonstrated that miRNAs take an active part in the maintenance of bone metabolic balance. Mineralizing OB‐derived exosomes serve as carriers of miRNAs related to OB differentiation and mediate activation of Wnt signaling via Axin1 inhibition, thereby promoting MSC osteogenic differentiation.
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Besides, miRNA‐mediated intercellular communication also plays a significant role in the intricate interaction between bone cells and muscle cells. Qin et al.
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demonstrated that myostatin, a myokine secreted by muscles, suppresses miR‐218 expression, which in turn releases the inhibition of sclerostin in osteocytes. The decreased osteocytic exosomes containing miR‐218 are found to downregulate osteoblastic differentiation via inactivation of the Wnt signaling pathway and reduction of Runx2.
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MiRNAs also play a role in regulating bone homeostasis by targeting KLFs.
KLF10 has been proven to promote OB differentiation, bone formation, and mineralization. You et al.
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found that miR‐197‐3p significantly represses KLF10 expression, thereby inhibiting OB differentiation and disrupting the metabolic balance of bone. Furthermore, miR‐20a‐5p was demonstrated to promote adipocyte differentiation from bone marrow stromal cells by negatively regulating KLF3 during the early phase of adipogenesis.
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MiRNA‐1236‐3p expression has been found to decrease in OS, which inhibits the proliferative ability of OS cells and mediates apoptosis by targeting KLF8.
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In conclusion, a program of multiple miRNAs may control cellular lineage progression and function by affecting KLFs, thereby directly or indirectly modulating bone homeostasis.
Recent research evidenced that long ncRNAs (lncRNAs) function as key regulators by modulating the expression level of target genes via epigenomic, transcriptional, or posttranscriptional approaches in crucial cellular functions, including cell proliferation, differentiation, apoptosis, migration, and invasion.
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Yang et al.
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identified a novel mutation in the lncRNA Reg1cp, which promotes bone formation and leads to higher bone density. Mechanistically, mutated lncRNA Reg1cp directly binds to KLF3 to inhibit its activity, thereby promoting the formation of CD31 hi Emcn hi endothelium in the bone marrow and thus stimulating angiogenesis during osteogenesis.
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Additionally, Recent studies have shown that lncRNAs play a role in regulating the expression of KLFs by acting as sponges for specific miRNAs. For example, small nucleolar RNA host gene 15 (SNHG15) has been found to sponge miR‐7, which targets KLF4, leading to the inhibition of ECM degradation and ultimately reducing the progression of osteoarthritis (OA).
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LncRNA maternally expressed 3 (MEG3) was proved to improve KLF4 expression via sponging miR‐9‐5p, which significantly enhances the survival and migration ability of chondrocytes, and inhibits cell apoptosis and inflammatory response, thereby protecting cartilage.
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LncRNA LINC02381 suppresses osteogenic differentiation of human umbilical cord blood‐derived MSCs by sponging miR‐21 to enhance the inactivation of the Wnt/β‐catenin pathway mediated by KLF12.
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Furthermore, lnc‐HLA‐DQA1‐5, lnc‐RP11‐127H5.1.1‐1, and lnc‐RTN2‐1 regulate KLF2 expression by sponging miRNAs (miR‐6799‐5p, miR‐1915‐3p, miR‐6764‐5p, miR‐6796‐5p, and miR‐6895‐3p), which is involved in the occurrence and development of meniscus degeneration in OA.
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Circular RNAs (circRNAs), derived from the process of back‐splicing, are more stable than linear RNAs because of their unique loop structure, which is resistant to exonuclease‐mediated degradation.
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It has been demonstrated that circRNAs contain abundant miRNA binding sites and could function as competing endogenous RNAs to modulate the interaction between miRNA and target mRNA.
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KLFs serve as downstream protein of miRNAs and their expression depends on the precise regulation of circRNA/miRNA interaction network. As mentioned above, KLF5 promotes cartilage matrix degradation by inducing MMP‐9 expression at the transcriptional level.
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Interestingly, the Kai Fu Wang group demonstrated that circ‐ATRNL1 could directly target miR‐153‐3p to inhibit miR‐153‐3p‐mediated KLF5 silencing, thereby ameliorating inflammatory responses, cell apoptosis, and ECM degradation.
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Similarly, circ‐Strn3 could inhibit the matrix metabolism of chondrocytes in OA by competitively sponging miRNA‐9‐5p that targets KLF5
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(Figure 4 and Table 2 ).
The coupling effects between KLFs and ncRNAs during bone remodeling. MiR‐21‐5p derived from BMMSCs inhibits KLF3 to enhance OB proliferation. Osteocyte‐derived exosomal miR‐218, which activates the Wnt signaling pathway and induces Runx2, is suppressed in osteocytes due to myokine secreted by muscles, resulting in the downregulation of osteoblastic differentiation. MiR‐197‐3p represses KLF10 expression, thereby inhibiting OB differentiation and disrupting the metabolic balance of bone. LncRNA LINC02381 suppresses osteogenic differentiation of human umbilical cord blood‐derived MSCs by sponging miR‐21 to enhance the inactivation of the Wnt/β‐catenin pathway mediated by KLF12. SNHG15 sponges miR‐7 targeting KLF4 and lncRNA MEG3 sponges miR‐9‐5p targeting KLF4, thereby inhibiting ECM degradation and cell apoptosis. lnc‐HLA‐DQA1‐5, lnc‐RP11‐127H5.1.1‐1, and lnc‐RTN2‐1 regulate KLF2 expression by sponging miRNAs (miR‐6799‐5p, miR‐1915‐3p, miR‐6764‐5p, miR‐6796‐5p, and miR‐6895‐3p), which is involved in the occurrence and development of meniscus degeneration. Circ‐Strn3 could sponge miR‐9‐5p targeting KLF5 and Circ‐ATRNL1 could sponge miR‐153‐3p targeting KLF5 and circ‐CDK14 could sponge miR‐1183 targeting KLF5, thereby ameliorating inflammatory responses, cell apoptosis, and ECM degradation.
The coupling effect between KLFs and epigenetic regulation during bone remodeling.
Klfs
OA is a prevalent joint disorder that affects people worldwide caused by the excessive production of cartilage MMPs, inflammatory response, and apoptosis, leading to the destruction of the cartilage matrix, inhibition of cartilage matrix synthesis,
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chronic pain, and disability.
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Recent research demonstrated that multiple members of the KLF family are intimately involved in the onset or progression of OA.
Kawata et al.
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identified that KLF4 and KLF2 are important modulators of chondrocytes. Adenoviruses containing KLF4 and KLF2 genes could significantly alleviate OA progression, including cartilage degradation, meniscus, and synovium inflammation. On the one hand, KLF4 and KLF2 are central transcription factors that directly bind to cartilage signature genes such as COL2A1, PRG4, and SOX to increase their expression. On the other hand, they are involved in protein kinase A (PKA)–RAP1–MEK–CREB signaling axis, ultimately suppressing mediators of inflammation and ECM‐degrading enzymes.
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Besides, KLF4 transcriptionally regulates InsR, which functions as a critical regulatory factor inactivating JAK2/STAT3 signaling, thus suppressing apoptosis of IL‐1β‐induced OA chondrocytes.
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Another study also demonstrated that KLF4 promotes chondrocyte differentiation induced by simvastatin, which may be involved in the protective role of KLF4 in OA cartilage.
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lncRNA MEG3 induces KLF4 expression by sponging miR‐9‐5p, thereby enhancing the protective role of KLF4 in chondrocytes.
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Similarly, SNHG15 regulates the miR‐7/KLF4/β‐catenin axis, modulating ECM homeostasis to alleviate the progression of OA.
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KLF2 has also been proven to block apoptosis of chondrocytes and matrix degradation by activating Nrf2/antioxidant‐response element (ARE) signaling pathway.
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Sun et al.
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showed that early growth response 1 (EGR1), which is highly expressed in OA cartilage, activates KLF5 and β‐catenin signaling to promote cartilage degeneration and hypertrophy. Interestingly, another study found that KLF5 is downregulated in OA cartilage tissues and protects chondrocytes against IL‐1β‐induced damage cell damage. The molecular mechanism suggested that circ‐CDK14 could enhance KLF5 expression via targeting miR‐1183, which serves as a negative upstream regulator of KLF5.
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Moreover, circStrn3 also inhibits matrix metabolism of chondrocytes in OA through competitively sponging miRNA‐9‐5p targeting KLF5.
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Circ‐ATRNL1/miR‐153‐3p/KLF5 axis also plays a protective role in the development and progression of OA.
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MMP‐3 is regarded as one of the most important cartilage‐degrading enzymes that mediate the degradation process of type II collagen and aggrecan. The Yishuo Li group found KLF15 is downregulated in chondrocytes from OA patients, which may perform the protective role in OA chondrocytes. Mechanistically, KLF15 could bind to the promoter region of MMP‐3 and inhibit its expression at the transcriptional level, thereby improving articular cartilage degradation in OA.
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Additionally, KLF11 can suppress oxidative stress and apoptosis in OA chondrocytes by inhibiting the p38 MAPK signaling pathway.
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KLF10, which is a harmful factor overexpressed in both senescent chondrocytes and cartilage affected by OA,
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inhibits the proliferation and migration of chondrocytes via upregulation of Acvr1 and downregulation of Inhbb, significantly accelerating OA progression.
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KLF10 deletion attenuates the tert‐butyl hydroperoxide (TBHP)‐induced senescence, blocking ROS production and maintaining mitochondrial homeostasis, thereby protecting cartilage against OA damage
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(Figure 5 ).
The detailed mechanisms of OA progression through KLFs associated signaling pathways. KLF4 and KLF2 directly bind to cartilage signature genes such as COL2A1, COL11A2, PRG4, and SOX9 to increase their expression. KLF4 and KLF2 are involved in the PKA–RAP1–MEK–CREB signaling axis, ultimately suppressing mediators of inflammation and ECM‐degrading enzymes. KLF4 transcriptionally regulates InsR, inactivating JAK2/STAT3 signaling, thus suppressing apoptosis of IL‐1β‐induced OA chondrocytes. KLF2 activates the Nrf2/ARE signaling pathway to block apoptosis of chondrocytes and matrix degradation. SNHG15 sponges miR‐7 targeting KLF4 to regulate β‐catenin, and LncRNA MEG3 sponges miR‐9‐5p targeting KLF4, thereby inhibiting ECM degradation and cell apoptosis. EGR1 activates KLF5 and β‐catenin signaling to promote cartilage degeneration and hypertrophy. Circ‐Strn3 could sponge miR‐9‐5p targeting KLF5 and CircATRNL1 could sponge miR‐153‐3p targeting KLF5 and circCDK14 could sponge miR‐1183 targeting KLF5, protecting against OA. KLF10 upregulates Acvr1 and downregulates Inhbb to inhibit the proliferation and migration of chondrocytes. KLF10 promotes the TBHP‐induced senescence and ROS production. KLF 11 inhibits the p38 MAPK signaling pathway to suppress oxidative stress and apoptosis. KLF15 activates SOX‐9 expression to promote chondrogenic differentiation of hMSCs. KLF15 could bind to the promoter region of MMP‐3 and inhibit its expression, thereby improving articular cartilage degradation in OA.
OP is a common orthopedic disorder, characterized by low bone mineral density (BMD), altered bone microstructure, and increased fracture incidence.
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The imbalance between OB‐mediated bone formation and OC‐mediated bone resorption is the main contributor to OP.
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KLFs participate in the regulation of OB and OC activity.
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Several studies have demonstrated that KLF10 plays a crucial role in regulating OB differentiation, bone formation, and mineralization processes.
45
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KLF10 could not only activate the transcription of the Runx2 gene via directly binding to the promoter and interacting with translated protein,
45
but also suppress osteoclastogenesis through the repression of the NFATc1 pathway and MEK/ERK signal transduction.
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Further, according to quantitative computerized tomography studies, there is strong evidence that KLF10 is associated with volumetric cortical BMD.
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Compared with the normal population, the expression of KLF10 is significantly reduced in the skeletal tissues of osteoporotic patients.
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KLF4 is reported to modulate bone homeostasis by suppressing both OC and OB differentiation.
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However, current studies demonstrated that KLF4 expression is time‐specific and shows corresponding expression levels in different development stages, exerting diverse effects on bone mass. For instance, KLF4 conditional knockout in bone progenitor cells results in decreased OB production in mice, so as to significantly reduce bone mass,
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while mice with conditional deletion of KLF4 in OBs exhibit the opposite phenotype with high bone mass caused by the enhancement of bone formation.
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Further studies indicated that tumor necrosis factor‐α (TNF‐α) significantly upregulates the expression of SOX5 transcriptionally, which inhibits the expression of OB markers such as Runx2, leading to a suppressive effect on the osteogenic differentiation of adult hMSCs, while KLF4 knockdown can reverse the inhibition.
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The local vasculature actively participates in both bone formation and resorption by determining the fate of progenitor cells in the skeletal system. CD31 hi EMCN hi vessels, located in the metaphysis and endosteum of postnatal long bones, have been proven to couple angiogenesis and osteogenesis.
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The Mi Yang group demonstrated that KLF3 could inhibit the expression of JunB and Vegfa, thus repressing the formation of the CD31 hi Emcn hi endothelium in the bone marrow, ultimately leading to decreased bone mass.
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Furthermore, Yang et al.
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demonstrated that GC treatment results in impaired bone formation by activating adipogenesis‐associated KLF15/PPARγ2/FoxO3a/Wnt pathway and suppressing the canonical osteogenesis‐related Wnt signaling. Additionally, KLF7 could directly bind to the promoter region of HO‐1 to repress its expression, and thereby promote OC differentiation, ultimately facilitating OP progression.
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Primary bone cancers, such as OS, Ewing sarcoma, and chondrosarcoma, are relatively rare but associated with high morbidity and mortality rates.
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The development of bone cancers is partly ascribed to the metabolic changes caused by signal pathway reprogramming, which are vital to sustaining increased redox, bioenergetic, and biosynthesis demands of a tumor cell.
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Recent studies showed that transcription factors play dominant roles in the initiation and advancement of OS, associated with major metabolic pathways.
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KLF2 has been shown to have growth‐inhibitory, proapoptotic, and antiangiogenic effects, which are downregulated in malignancies.
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Zheng et al.
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found that circ‐LRP6 is highly expressed in OS and interacts with LSD1 and EZH2 to mediate their binding to the promoter regions of KLF2, thereby inhibiting KLF2 expression and ultimately promoting OS development. Furthermore, KLF2 is downregulated by SNHG6, a novel type of molecule associated with the progression of multiple cancers, thereby accelerating OS progression.
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KLF4 is a crucial regulator of normal cell proliferation and inhibits the proliferation of tumor cells, serving as a suppressor in many cancers. Qi et al.
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found that overexpression of KLF4 in OS cells led to the manifestation of traits commonly associated with OS CSCs including heightened sphere‐forming potential, elevated levels of stemness‐associated genes, and increased potential for metastasis. Contrarily, KLF4 knockdown could reduce colony formation in vitro and inhibit tumorigenesis in vivo, further confirming the oncogenic role in OS pathogenesis.
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A recent study identified that miR‐135a is downregulated in OS tissue and inhibits cell invasion and expression by directly targeting KLF4.
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KLF6 serves as an important tumor suppressor gene frequently downregulated in multiple human cancers.
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Zhu et al.
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found KLF6 overexpression inhibits the viability, proliferation, and invasion of MG63 cells, and enhances cell apoptosis of the MG63 OS cell line via suppression of bcl‐2 and MMP‐9 and activation of p21.
MiRNAs serve as the upstream and downstream components of KLFs, widely participating in the occurrence and progression of OS. For instance, miR‐652 negatively regulates KLF9 by directly interacting with its 3′‐UTR, performing a carcinogenic role in OS cells.
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Similarly, MiR‐378 also targets KLF9 to promote the cell proliferation of OS.
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Circ_0078767 has been demonstrated to enhance KLF9 expression by targeting miR‐889, ultimately inhibiting OS progression.
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LncRNA KCNQ1OT1 is highly expressed in human OS tissues, and promotes OS cell proliferation, migration and invasion. Mechanistically, KCNQ1OT1 directly targets the miR‐3666/KLF7 axis and activates Wnt/β‐catenin signaling to facilitate OS progression.
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In addition, it is demonstrated that miRNA‐1236‐3p suppresses the proliferative ability and induces apoptosis of OS cells by downregulating KLF8, an important cancer‐promoting modulator.
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KLF8 directly binds the promoter region to inhibit the expression of miR‐429, which directly targets SOX2 to mediate CSC‐like features in CD133 + OS stem cell‐like cells (OSCs).
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Besides, KLF5 enhances the expression of miR‐487a by directly binding to its promoter region, which significantly facilitates the invasion and metastasis of OS cells via targeting NKX3‐1
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(Figure 6 ).
The detailed mechanisms of OS progression through KLFs associated signaling pathways. Circ‐LRP6 interacts with LSD1 and EZH2 to bind to the promoter regions of KLF2, thereby inhibiting KLF2 expression and ultimately promoting OS development. SNHG6 downregulates KLF2 to accelerate OS progression. MiR‐135a targets KLF4 to inhibit cell invasion. KLF5 enhances the expression of miR‐487a that targets NKX3, which significantly facilitates the invasion and metastasis of OS cells. KLF6 suppresses bcl‐2 and MMP‐9 and activates p21 to inhibit proliferation and invasion and enhance cell apoptosis. KCNQ1OT1 targets the miR‐3666 to promote KLF7 expression, activating Wnt/β‐catenin signaling to facilitate OS progression. MiRNA‐1236‐3p downregulates KLF8 to suppress the proliferative ability and induce apoptosis of OS cells. KLF8 binds the promoter region to inhibit the expression of miR‐429, targeting SOX2 to mediate cancer stem cell‐like features. MiR‐378 and miR‐652 target KLF9 to promote the cell proliferation of OS. Circ_0078767 targets miR‐889 to enhance KLF9 expression, ultimately inhibiting OS progression.
According to research, bone metastasis is the third most common site for cancer metastasis, with around 70% of patients with metastatic prostate and breast cancer developing it.
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Bone metastasis is typically classified into three types: osteolytic, osteosclerotic, and mixed. Osteoblastic metastasis is typical for PCa, while breast cancer usually results in osteolytic metastasis.
Recently, increasing evidence indicated that several KLF members are involved in a variety of biological processes during breast cancer progression, including proliferation, migration, invasion, metastasis, and apoptosis.
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Studies have demonstrated that increased expression of vascular cell adhesion molecule 1 in disseminated breast tumor cells plays a crucial role in attracting pre‐OCs and facilitating their transformation into mature OCs, which ultimately leads to bone metastasis.
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Upon bone destruction, TGF‐β is released from the bone matrix and signals to breast cancer, which may induce the expression of KLF10 and KLF11, which can further promote the development of bone metastasis.
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Additionally, the Goutham Narla group demonstrated that KLF6‐SV1, a splice variant of KLF6, has been found to be upregulated in hormone‐refractory metastatic PCa. Its upregulation has been linked to the acceleration of PCa progression and metastasis through the modulation of apoptosis, cellular proliferation, and angiogenesis. PCa cells with overexpressed KLF6‐SV1 metastasize more rapidly and disseminate to bone. Inhibition of KLF6‐SV1 leads to spontaneous apoptosis in cultured PCa cell lines and also suppresses tumor growth in mice.
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Indeed, bone homeostasis is a dynamic process governed by the balanced activity of OCs, which are responsible for bone resorption, and OBs, which are responsible for bone formation. Disruption of this balance is a hallmark of bone metastasis. Therefore, the regulation of bone metastasis by the KLF family may extend beyond their roles in cancer cell behavior, encompassing significant impacts on bone homeostasis, specifically osteoclastogenesis, and osteoblastogenesis. As mentioned above, various KLF members have been implicated in modulating the differentiation and activity of OCs. Dysregulation of these transcription factors can enhance OC formation, leading to excessive bone resorption. In the setting of cancer metastasis, such enhanced osteoclastic activity can create a favorable environment for cancer cells to invade and thrive within the bone matrix. On the other hand, KLFs also influence OB differentiation and function. Proper regulation of these pathways is essential for maintaining bone integrity. Abnormal expression of KLFs in OBs can impair bone formation, contributing to the imbalance between bone resorption and formation. In the context of osteoblastic metastasis seen in PCa, alterations in KLF expression could potentially enhance OB activity, leading to the characteristic bone lesions associated with this type of metastasis. By influencing both osteoclastogenesis and osteoblastogenesis, KLFs can create a bone microenvironment that either favors bone resorption or bone formation, depending on the type of metastatic cancer. This dual role highlights the importance of KLFs in maintaining skeletal homeostasis and the potential consequences of their dysregulation in the progression of bone metastases. Targeting the specific KLF‐mediated pathways that regulate these processes could offer novel therapeutic strategies to mitigate bone metastasis in cancer patients.
KLFs modulate bone homeostasis in multiple pathways including transcriptional regulation, energy metabolism as well as epigenetic activity. Aging, inflammation, stress, and other microenvironmental alterations affect the expression or activity of the KLF family, and thus lead to the disorder of downstream gene expression, ultimately causing a series of bone destruction diseases. Given the key role of KLFs in bone‐related diseases (including OA, OP, OS, etc.), the development of drugs targeting KLFs may provide effective therapies for bone destruction diseases. For instance, Quercetin has been shown to decrease the expression of KLF4, which helps protect cells against oxidative damage and can potentially be used to treat oxidative‐related diseases.
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Furthermore, Li et al.
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reported that adriamycin treatment has been found to increase the expression of KLF4, leading to enhanced metastasis and cancer stemness in OS cells. Fortunately, simvastatin administration can markedly reverse adriamycin‐induced tumorigenesis by downregulating KLF4 expression, providing potential new treatments for OS.
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Additionally, Kawata et al.
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identified a class I selective HDAC inhibitor moceinostat, which could improve tissue destruction and inflammation in OA by activating KLF4. Thiazolidinedione, a drug for treating type II diabetes, has been proven to KLF11 expression, which may be applied in the treatment of KLF11 silencing‐mediated formation of OS CSCs.
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These natural products and medicines possess certain curative effects with poor tissue specificity and promiscuity of binding. The regulation of gene expression mediated by miRNAs is owned to virtually all processes of skeleton development and has been shown its biological characteristics in bone destruction diseases, demonstrating the possibilities in the relevant treatment. MiRNA‐based therapies targeting KLFs may provide significant clinical benefits to cancer patients potentially. For instance, BMMSCs‐derived exosomes could enhance OB proliferation via miR‐21‐5p mediated inhibition of KLF3, which may be a potential therapeutic strategy to improve OP.
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Further research on the miRNA‐KLF axis is required to fully understand the underlying mechanism, which has the potential to improve targeted therapies for bone destruction diseases.
Author
Tingwen Xiang and Chuan Yang were major contributors in writing the manuscript and creating all the figures and tables. Tingwen Xiang, Chuan Yang, and Zihan Deng performed literature search. Dong Sun, Fei Luo, and Yueqi Chen made substantial contributions to the design of the manuscript and revised it critically for important intellectual content. All authors have read and approved the final version of this manuscript.
Conclusions
Herein, we have concluded the multifaceted roles of KLF on body health and disease, and selectively outline the available evidence regarding the effects of KLFs on the regulation of bone homeostasis, as well as discuss the coupling effects between KLFs and bone remodeling and how metabolic and epigenetic approaches could be employed by targeting KLFs. KLFs participate in the regulation of bone homeostasis, which is a subtle and context‐dependent process involved in nearly all aspects of skeletal development. The complicated roles of the KLF family in the skeletal system coupled with multiple cellular processes such as differentiation, proliferation, migration, and apoptosis, with spatio‐temporal continuity and tissue specificity. Epigenetic determinants including DNA and histone modifications as well as ncRNAs, are the main administrators and implementers of KLF‐mediated gene expression regulation, function in a development‐specific manner. Collectively, these epigenetic determinants, KLF family, and KLF‐targeted downstream genes as well as signaling pathways construct a KLF‐centered regulatory network that enables gene expression to be appropriate for bone physiological processes.
Abnormal KLF expression caused by various factors will affect the expression of downstream molecules, thus mediating the occurrence of pathological changes. In light of the crucial function of the KLF family members in a variety of diseases, potential therapies for targeting these molecules have become promising therapeutic strategies in the treatment of many diseases. The investigation of KLF family offers a fresh perspective for gaining a comprehensive understanding of multiple system biology. Furthermore, by examining the action of KLFs in bone cells, we can enhance our comprehension of bone development and diseases, as well as contribute to the advancement of valuable novel treatment approaches for bone‐related disorders.
However, several major challenges are identifying specific modulation measures on KLFs, which enable to display the close communication among varying cells in the dynamic balance of microenvironment in bone homeostasis. In conclusion, further studies on the effector mechanisms of the KLF signaling pathway and its multiple modifications at different levels will provide novel insights into developing effective therapeutic targets for treating multiple disorders in the skeletal system.
Introduction
Krüppel‐like factors (KLFs) are a family of transcription factors characterized by the presence of three C2H2‐type zinc finger motifs at their C‐terminus, which are responsible for binding to specific DNA sequences, thereby regulating the transcription of target genes. Since its identification as the mammalian homolog gene of the Krüppel in Drosophila melanogaster in 1993, the KLF family has continued to grow with the identification of more KLF members.
1
These factors are involved in the regulation of gene expression related to cellular differentiation, proliferation, and apoptosis. Recent research has revealed that the influence of KLFs extends beyond individual cellular processes to encompass broader systemic functions, which are proved to widely participate in regulating various biological processes and be integral to maintaining homeostasis in various tissues and organs, influencing both health and disease states.
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Certain KLFs support cardiovascular health via modulating endothelial cell function and heart muscle adaptation, with disruptions potentially leading to atherosclerosis and heart failure.
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Within the immune system, KLFs impact inflammation and immune cell functions, and also play essential roles in tissue repair and cancer progression.
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Meanwhile, its dysregulation can be associated with neurodegenerative diseases.
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Recently, emerging evidence has highlighted their crucial involvement in the skeletal system, where they contribute to bone homeostasis between bone formation and resorption. Bone is a dynamic tissue that is constantly going through remodeling, in which organic and inorganic components are formed by osteoblasts (OBs) and absorbed by osteoclasts (OCs).
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OCs derive from hematopoietic progenitors in response to macrophage‐colony stimulating factor (M‐CSF) and receptor activator of nuclear factor‐kappaB (NF‐κB) ligand (RANKL),
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which are a kind of large and multinucleated cells with the ability to degrade bone matrix by secreting H + , Cl − , cathepsin K and matrix metalloproteinases (MMPs) into the resorption lacuna.
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The differentiation of OCs requires the concerted activation of transcription factors including c‐fos, c‐jun, nuclear factor of activated T cell c1 (NFATc1), and NF‐κB.
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Individually, OBs are bone‐forming cells with mesenchymal origin that secrete proteins and deposit minerals to reconstruct the bone matrix. The differentiation of OBs requires an orchestrated series of events to modulate activities of transcription factors including Runt‐related transcription factor 2 (Runx2), Osterix, and β‐catenin.
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The coordination of stage‐specific transcription factors is essential for the maintenance of bone homeostasis, orchestrating the OB–OC coupling processes. Aberrant expression or function of many of these transcription factors cause disrupted balanced activities of OCs and OBs, associated with the breaking of bone remodeling and the occurrence of bone‐related diseases.
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Among these transcription factors, KLFs, a group of zinc finger transcription factors, have been proven to affect the differentiation of OBs and OCs and participate in their coupling cross‐talk, efficaciously maintaining bone homeostasis.
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The effect of KLFs on bone homeostasis is not only mediated through conventional pathways but also by energy metabolism alteration and epigenetic modification. Various KLF family members are expressed in bone‐related cells and contribute to the regulation of bone cell proliferation, differentiation, and function, either working together synergistically or in an antagonistic manner.
22
The transition from understanding KLFs’ systemic roles to their specific actions in bone underscores the importance of these factors in maintaining skeletal homeostasis and addressing bone‐related disorders. By bridging systemic functions with localized bone effects, KLFs emerge as key players in orchestrating both general physiological processes and specialized skeletal functions. While much has been learned about KLFs in general, their precise mechanisms of action and interactions with other transcription factors in various developmental stages and disease conditions are not fully understood. In this review, we summarized the pivotal roles of KLFs across the major systems and concentrated on KLF‐related regulatory mechanisms in pathophysiological bone homeostasis, discussed the promising role of KLFs in health and diseases, and aimed to provide a theoretical foundation for the establishment of therapeutic strategies for treating bone destruction diseases by targeting KLFs.
Multifaceted
KLFs are transcription factors crucial for regulating various biological processes across health and disease spectrums. They maintain cellular integrity and systemic homeostasis, influencing physiological activity such as metabolic processes, and immune responses. In disease contexts, KLFs are pivotal in managing metabolic disorders, cancer progression, inflammatory conditions, and so on, participating in multiple pathological and physiological changes.
KLFs play a crucial role in the development, function, and regeneration of the nervous system, responsible for regulating physiological processes such as neuronal differentiation, synaptic formation, and neuroprotective mechanisms. Specifically, KLF4 is known to be involved in the self‐renewal and differentiation of neural stem cells within the nervous system,
46
,
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as well as participate in nerve regeneration after injury, which facilitates remyelination and functional recovery after spinal cord injury via inducing astrocyte reprogramming.
48
KLF4 has been also identified as an effective inhibitor of axon growth in retinal ganglion cells (RGCs) and functions to repress axon and dendrite initiation and elongation by hippocampal neurons in vitro.
49
Additionally, KLF4 demonstrates a neuroprotective role through the regulation of the Nrf2/Trx1 pathway.
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Both KLF6 and KLF7 have been shown to promote neurite growth.
49
A detailed investigation into KLF7 within the nervous system certified that knocking out KLF7 leads to impairments in axon growth and pathfinding in various areas such as the olfactory system, retina, and brain.
51
Moreover, the capacity of KLF7 to boost the expression of Trk neurotrophin receptors might be crucial for the survival of RGCs following optic nerve injury.
52
Therefore, KLF7 could not only accelerate neurite growth but also potentially enhance the responsiveness of neurons to trophic factors, ultimately improving neuroprotection postinjury.
KLF8 has been shown to regulate the expression of met and p53 crucial for the development of granule and purkinje cells,
53
as well as activate the Wnt/β‐catenin signaling pathway, potentially impacting the progression of Alzheimer's disease.
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KLF9 contributes to late‐phase neuronal maturation in the developing dentate gyrus and during adult hippocampal neurogenesis,
55
which exerts various functions across different neuronal types.
8
Furthermore, KLF15 acts as a transcriptional repressor of the rhodopsin and interphotoreceptor retinoid‐binding protein (IRBP) promoters, as well as involved in restraining photoreceptor‐specific gene expression in nonphotoreceptor cells.
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KLF2 has the potential to enhance endothelial nitric oxide synthase uncoupling through the Nrf2/HO‐1 pathway in cases of endothelial injury, leading to improved cell viability, decreased lactate dehydrogenase (LDH) release, and a reduction in the oxidative stress response.
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In endothelial cells, KLF2 suppresses prothrombotic factors like plasminogen activator inhibitor 1 and tissue factor, while simultaneously promoting the upregulation of the antithrombotic factor thrombomodulin (TM) in inflammatory conditions.
4
,
58
KLF4 has been discovered to be expressed in various vascular cell types and contributes to the progression of vascular diseases by regulating the transcription of multiple genes through interactions with different partner proteins. Specially, KLF4 inhibits the expression of smooth muscle cell differentiation markers via associating with serum response factor, HDACs, and binding to p53. Furthermore, KLF4 collaborates with Runx2 to reinforce arterial medial calcification.
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KLF5 has a variety of effects, such as promoting vascular smooth muscle cell proliferation, lipid deposition in the vessels, and inflammation, all of which substantially participate in atherosclerosis.
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,
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KLF5 could activate Cyclin D1 and suppress p21,
62
and its interaction with poly‐ADP‐ribose‐polymerase‐1 obstructs the proapoptotic effect,
63
making a contribution to rescuing cells from undergoing apoptosis in the early phase and accelerating cell growth in the late phase to stimulate vascular remodeling in case of injury. Besides, KLF14 is also implicated in the regulation of diseases and pathological processes related to atherosclerosis.
3
On the one hand, research has demonstrated that KLF14 plays a protective role by inhibiting lipoprotein lipase mediated by miR‐27a, as well as diminishing the secretion of proinflammatory cytokines and lipid accumulation.
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On the other hand, KLF14 suppresses the NF‐κB signaling pathway by impeding the production of p65, thereby decreasing leukocyte adhesion to activated endothelial cells.
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KLF13 is primarily expressed in the heart involved in the transcription network required for heart development.
66
which functions as a pivotal protective element that prevents cardiomyocytes from DNA damage and death.
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Consistently, inhibition of KLF10 results in the alteration of Pten/Akt signaling to reduce cardiomyocyte apoptosis as well as enhance higher proliferation, playing a cardioprotective role in ischemic heart disease.
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In patients with heart failure, KLF15 participates in the adapting response to heart pressure overload via regulating the expression of atrial natriuretic factor (ANP) and B‐type natriuretic peptide (BNP).
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Moreover, through interactions with factors including myocardin, TGF‐β, myocyte enhancer factor 2, and GATA‐binding protein 4,
70
KLF15 is able to suppress cardiac fibrosis and hypertrophy, ultimately consummating heart function upon myocardial remodeling processes triggered by mechanical or metabolic factors.
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KLF4 performs distinct capabilities in the management of profibrotic mediators in various lung cell types. KLF4 in platelet‐derived growth factor receptor (PDGFR)‐β + ‐derived cells is of vital significance in the overload of myofibroblasts and extracellular matrix (ECM) generation and accumulation. Conversely, KLF4 in SMA + cells exhibits a protective effect, and especially, downregulation of its expression could account for an increase in lung myofibroblasts.
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Furthermore, KLF4 in myeloid cells including macrophages and polymorphonuclear neutrophils serves as a crucial regulator of the early proinflammatory immune response. The stimulation of both cell types with S. pneumoniae dramatically boosts KLF4 expression, thus promoting a proinflammatory phenotype.
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KLF6, as a downstream factor of LOX‐1/TGF‐β1 signaling pathway, is implicated in the pathological advancement of epithelial–mesenchymal transition (EMT)‐mediated pulmonary fibrosis with diabetes.
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Consistently, KLF15 also has the potential to counteract endoplasmic reticulum stress and inhibit excessive proliferation, migration, and ECM accumulation in lung fibroblast.
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Besides, KLF7 has been uncovered to be highly expressed in lung adenocarcinoma tissues and associated with unsatisfied clinical outcomes.
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KLF9 deficiency has been revealed to decrease the level of inflammatory factors and downregulate GSDMD expression, thereby alleviating lung injury and inflammatory responses.
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KLF2 primarily exerts vasoprotective functions through activating target genes including endothelial nitric oxide synthase, TM, and c‐type natriuretic peptide in liver sinusoid endothelial cells.
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Nevertheless, KLF2 also upregulates CD36 expression via a binding site on its proximal promoter region, which partially contributes to liver steatosis.
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KLF6 could mitigate the level of cellular oxidative stress and promote the responsibility for harmful stimuli. Further, with the modulation of Beclin1 transcription and activation of the mTOR/ULK1 pathway, KLF6 restrains excessive autophagy overactivation in order to safeguard the liver against ischemia/reperfusion injury.
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Except for the parenchymal organs, the impacts of KLFs across the digestive tract deserve attention. It has been manifested that KLF4 ameliorates intestinal permeability, substantially enhances intestinal tight junction, and alleviates endotoxemia via repressing NF‐κB transcription activity.
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KLF4, KLF5, KLF6, and KLF8 have been implicated in gastric carcinogenesis. Both KLF4 and KLF6 perform tumor suppressors.
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,
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KLF5 and KLF8 appear to promote the proliferation, invasion, and metastasis of human gastric carcinoma cells.
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,
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In colorectal tumors, KLF4, KLF6 and KLF9 have been identified to suppress colorectal carcinogenesis.
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,
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KLF4 restrains the expression of genes related to cell‐cycle progression including CCND1 and ODC .
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In contrast, KLF5 functions as colorectal carcinogenesis promoter.
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In the endocrine system, KLFs influence the biosynthesis, secretion, and function of various hormones by regulating gene expression, which in turn has a substantial impact on endocrine activity. KLF11 specifically controls the expression of the insulin genes by interacting with the insulin promoter and has been identified as a causal factor for maturity‐onset diabetes of the young 7 (MODY7).
90
Besides, KLF11 functions as a dominant inhibitor of the caveolin‐1 gene in response to cholesterol signals.
91
KLF14 has also been implicated in the pathophysiological progress of metabolic diseases, such as obesity, insulin resistance, and T2D.
92
KLFs also play a crucial role in the differentiation of adipocytes and the metabolism of fatty acids. KLF3 orchestrates lipid metabolism via improving fatty acid β‐oxidation (FAO).
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KLF15 in adipose tissue modulates insulin exudation and resistance through diminishing stearoyl‐CoA desaturase 1 and oxidative stress,
94
and it also has the capacity to shift fuel between glucose and fatty acids under different energy statuses in brown adipose tissue, which might enhance FAO accompanied by the promotion of the expression of Acox1 and Fatp1 while attenuating glucose oxidation.
95
KLFs are extensively expressed in tissues including kidney, bladder, and urethra, where they play crucial roles in the development, maintenance, and repair of the urinary system. These factors control genes associated with cell proliferation, differentiation, apoptosis, and inflammatory response, impacting both normal physiological conditions and diseases. KLF15 directly binds enhancers of regenerative genes such as adrenoreceptor alpha 1A to facilitate their expression in Xenopus laevis, the downregulation of which pharmacologically hinders nephric tubule regeneration, while the activation plays recuperating roles.
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Uterine and ovarian pathologies have been revealed to be both closely associated with the dysregulation of KLFs. Interestingly, higher levels of KLF12 were found in human endometrial cancer tissues compared with normal endometrium. The upregulation of KLF12 boosts cell proliferation and migration, as well as reins apoptosis through the activation of AKT signaling and promotion of CCND1 expression level, ultimately contributing to tumor growth.
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Furthermore, multiple studies have discovered that KLF9, KLF11, KLF12, KLF15, and KLF16 are all involved in the occurrence and development of endometriosis.
98
,
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Particularly, a notable reduction in KLF15 expression was observed in the mid‐secretory epithelial endometrial cells of patients with endometriosis compared with individuals without the condition. KLF15, probably believed as a transcription factor for TWIST2, directly binds to its promoter regions to facilitate the process of EMT, orchestrating endometrial receptivity during embryo implantation.
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KLF11 is abundantly expressed in reproductive tissues, where it alters endometrial metabolism by colocalizing with and recruiting the corepressor SIN3A/HDAC.
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Research has also shown that KLF11 not only hinders the development of endometriotic lesions but also effectively suppresses pathological scarring with Collagen1 repression.
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KLF9 knockdown may underlie progesterone resistance in endometriosis.
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KLF12 restrains the decidualization of human endometrial stromal cells by inhibiting Nur77 expression.
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Besides, KLF16 has been found to suppress endometrial CYP1A1 expression, which is associated with endometriosis and leads to decreased enzymatic activity
105
(Figure 2 ).
Multifaceted roles of KLFs in health and diseases across multiple systems. Nervous system : KLF4 activates the Nrf2/Trx1 pathway to protect neuro in astrocyte. KLF8 regulates the expression of met and p53 in purkinje cells. KLF8 also stimulates the Wnt/β‐catenin signaling pathway in the primary neuronal cells to impact the progression of Alzheimer's disease. KLF15 inhibits the transcription of the rhodopsin and IRBP in retina. Cardiovascular system : KLF2 enhances endothelial nitric oxide synthase uncoupling through the Nrf2/HO‐1 pathway in cases of endothelial injury to improve cell viability, decrease LDH release, and reduce the oxidative stress response. KLF4 modulates Runx2 expression to enhance the arterial medial calcification. KLF5 could activate Cyclin D1 and suppress p21 to repress apoptosis to stimulate vascular remodeling. KLF14 regulates miR‐27a to diminish lipoprotein lipase expression to inhibit atherosclerosis, as well as suppresses the NF‐κB signaling pathway to restrain endothelial inflammation. KLF10 alters Pten/Akt signaling to induce cardiomyocyte apoptosis. KLF15 regulates the expression of ANP and BNP in response to heart pressure. Respiratory system : LOX‐1/TGF‐β1/KLF6 signaling pathway is involved in EMT in human bronchial epithelial cells. Digestive system : KLF6 binds to the promoter region of Beclin1 and inhibits its transcription, as well as activates the mTOR/ULK1 pathway to protect the liver. KLF2 upregulates CD36 expression that is associated with liver steatosis. Endocrine system : KLF11 inhibits caveolin‐1 gene expression in response to cholesterol signals. Urinary system : KLF15 increases the expression of regenerative genes such as adrenoreceptor alpha 1A in Xenopus laevis to promote nephric tubule regeneration. Reproductive system : KLF12 activates AKT signaling and promotes CCND1 expression, contributing to tumor growth in human endometrial cancer. KLF15 promotes the transcription of TWIST2 to facilitate the process of EMT. KLF12 inhibits Nur77 expression to restrain the decidualization of human endometrial stromal cells. KLF16 suppresses the expression of endometrial CYP1A1 that is associated with endometriosis.
Coi Statement
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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