Universal predictive scaling laws for phase separation of prion-like low complexity domains

preprint OA: gold CC-BY-4.0
📄 Open PDF Full text JSON View at publisher
AI-generated summary by claude@2026-07, 2026-07-17

This study developed a coarse-grained model to quantify how amino acid mutations in prion-like low complexity domains alter their phase separation behavior, revealing universal scaling laws across six different proteins.

One-sentence paraphrase of the abstract; not a substitute for reading it. No clinical advice. How this works

AI-generated deep summary by claude@2026-07, 2026-07-17 · read from full text

The paper studied how amino acid mutations affect phase separation stability of prion-like low complexity domains (PLDs), using a residue-resolution coarse-grained model (Mpipi) to simulate 140 PLD mutants drawn from six proteins (hnRNPA1, TDP43, FUS, EWSR1, RBM14, and TIA1). The simulations identify predictive rules that relate the number and type of sequence mutations to changes in the critical solution temperature for PLD phase separation, and these rules are consistent with mutation physicochemical properties across the proteins tested. The authors’ stated caveat is that the work is presented as a preprint and has not been peer reviewed. Relevance to endometriosis: it does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match to PLD-driven phase separation mechanisms.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Abstract Proteins containing prion-like low complexity domains (PLDs) are common drivers of the formation of biomolecular condensates and are prone to misregulation due to amino acid mutations. Here, we exploit the accuracy of our residue-resolution coarse-grained model, Mpipi, to quantify the impact of amino acid mutations on the stability of an unprecedented set of 140 PLD mutants from six proteins (hnRNPA1, TDP43, FUS, EWSR1, RBM14, and TIA1). Our simulations reveal the existence of predictive rules that quantify the range of change in the critical solution temperature of PLDs as a function of the number and type of amino acid sequence mutations. Remarkably, these rules are consistent with the physicochemical properties of the mutations and extend across the entire family tested, suggesting universal scaling laws govern PLD phase behaviour. Our work offers a quantitative lens into how the emergent behaviour of PLD solutions varies in response to physicochemical changes of single PLD molecules.
Full text 11,327 characters · extracted from preprint-html · click to expand
Universal predictive scaling laws for phase separation of prion-like low complexity domains | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Universal predictive scaling laws for phase separation of prion-like low complexity domains Jerelle Joseph, M. Julia Maristany, Anne Aguirre Gonzalez, Rosana Collepardo-Guevara This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-3068886/v1 This work is licensed under a CC BY 4.0 License Status: Posted Version 1 posted You are reading this latest preprint version Abstract Proteins containing prion-like low complexity domains (PLDs) are common drivers of the formation of biomolecular condensates and are prone to misregulation due to amino acid mutations. Here, we exploit the accuracy of our residue-resolution coarse-grained model, Mpipi, to quantify the impact of amino acid mutations on the stability of an unprecedented set of 140 PLD mutants from six proteins (hnRNPA1, TDP43, FUS, EWSR1, RBM14, and TIA1). Our simulations reveal the existence of predictive rules that quantify the range of change in the critical solution temperature of PLDs as a function of the number and type of amino acid sequence mutations. Remarkably, these rules are consistent with the physicochemical properties of the mutations and extend across the entire family tested, suggesting universal scaling laws govern PLD phase behaviour. Our work offers a quantitative lens into how the emergent behaviour of PLD solutions varies in response to physicochemical changes of single PLD molecules. Biological sciences/Biophysics/Computational biophysics Biological sciences/Biophysics/Molecular biophysics/Thermodynamics Biological sciences/Biophysics/Intrinsically disordered proteins phase separation biomolecular condensates prion domains TDP43 FUS hnRNPA1 scaling laws TIA1 EWSR1 RBM14 low complexity domains Full Text Additional Declarations There is NO Competing Interest. Supplementary Files SIUniversalScalingLawsNatComms.pdf Cite Share Download PDF Status: Posted Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-3068886","acceptedTermsAndConditions":true,"allowDirectSubmit":true,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":212626805,"identity":"c1253eba-9101-446c-9086-edc739ba54d3","order_by":0,"name":"Jerelle Joseph","email":"data:image/png;base64,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","orcid":"https://orcid.org/0000-0003-4525-180X","institution":"Princeton University","correspondingAuthor":true,"submittingAuthor":false,"prefix":"","firstName":"Jerelle","middleName":"","lastName":"Joseph","suffix":""},{"id":212626806,"identity":"27bf1fdb-37d3-4eb6-899f-8ad0ffa82445","order_by":1,"name":"M. Julia Maristany","email":"","orcid":"https://orcid.org/0009-0009-8875-9225","institution":"","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"M.","middleName":"Julia","lastName":"Maristany","suffix":""},{"id":212626807,"identity":"3dd5e8fc-1ebb-47ed-92b7-d834a2d25071","order_by":2,"name":"Anne Aguirre Gonzalez","email":"","orcid":"","institution":"University of Cambridge","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Anne","middleName":"Aguirre","lastName":"Gonzalez","suffix":""},{"id":212626808,"identity":"fe4532b9-44ca-460a-97ab-cac0bb840d56","order_by":3,"name":"Rosana Collepardo-Guevara","email":"","orcid":"https://orcid.org/0000-0003-1781-7351","institution":"University of Cambridge","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Rosana","middleName":"","lastName":"Collepardo-Guevara","suffix":""}],"badges":[],"createdAt":"2023-06-15 16:42:41","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-3068886/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-3068886/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":42240612,"identity":"8b1d1304-1bce-41e7-9ab0-13a2d583fc07","added_by":"auto","created_at":"2023-08-28 13:45:46","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":22246070,"visible":true,"origin":"","legend":"","description":"","filename":"UniversalScalingLawsNatComms.pdf","url":"https://assets-eu.researchsquare.com/files/rs-3068886/v1_covered_3637c5ba-6bd2-46c8-82d6-df1a1508d93d.pdf"},{"id":39052168,"identity":"10908f64-439e-4d88-a34c-dd7ee9bfc744","added_by":"auto","created_at":"2023-06-26 04:36:55","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"supplement","size":2784852,"visible":true,"origin":"","legend":"\u003cp\u003e\u003cbr\u003e\u003c/p\u003e","description":"","filename":"SIUniversalScalingLawsNatComms.pdf","url":"https://assets-eu.researchsquare.com/files/rs-3068886/v1/08e19861ab23ef1377a22b64.pdf"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Universal predictive scaling laws for phase separation\r\nof prion-like low complexity domains","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":true,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true},"keywords":"phase separation, biomolecular condensates, prion domains, TDP43, FUS, hnRNPA1, scaling laws, TIA1, EWSR1, RBM14, low complexity domains","lastPublishedDoi":"10.21203/rs.3.rs-3068886/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-3068886/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Proteins containing prion-like low complexity domains (PLDs) are common drivers of the formation of biomolecular condensates and are prone to misregulation due to amino acid mutations. Here, we exploit the accuracy of our residue-resolution coarse-grained model, Mpipi, to quantify the impact of amino acid mutations on the stability of an unprecedented set of 140 PLD mutants from six proteins (hnRNPA1, TDP43, FUS, EWSR1, RBM14, and TIA1). Our simulations reveal the existence of predictive rules that quantify the range of change in the critical solution temperature of PLDs as a function of the number and\r\ntype of amino acid sequence mutations. Remarkably, these rules are consistent with the physicochemical properties of the mutations and extend across the entire family tested, suggesting universal scaling laws govern PLD phase behaviour. Our work offers a quantitative lens into how the emergent behaviour of PLD solutions varies in response to physicochemical changes of single PLD molecules.","manuscriptTitle":"Universal predictive scaling laws for phase separation\nof prion-like low complexity domains","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2023-06-26 04:36:50","doi":"10.21203/rs.3.rs-3068886/v1","editorialEvents":[{"type":"communityComments","content":0}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"1b4e2eec-7334-4104-a69d-3640fb1c375b","owner":[],"postedDate":"June 26th, 2023","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"posted","subjectAreas":[{"id":22671756,"name":"Biological sciences/Biophysics/Computational biophysics"},{"id":22671757,"name":"Biological sciences/Biophysics/Molecular biophysics/Thermodynamics"},{"id":22671758,"name":"Biological sciences/Biophysics/Intrinsically disordered proteins"}],"tags":[],"updatedAt":"2023-08-28T13:36:14+00:00","versionOfRecord":[],"versionCreatedAt":"2023-06-26 04:36:50","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-3068886","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-3068886","identity":"rs-3068886","version":["v1"]},"buildId":"FbvkV6FR0MCFSLy54lSbu","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00
unpaywall
last seen: 2026-05-21T05:10:58.409756+00:00
License: CC-BY-4.0