Methods
fronts are essential to exploring concerns in women’sh e a l t h ,i ti s
crucial to consider the impact of social determinants of health on patients’
presentations and clinical outcom es. For example, patients from low
socioeconomic status who rely on Medicare or Medicaid or are under- or
uninsured may not have reliable a ccess to a physician to help manage
gynecological conditions, causing adverse health outcomes56.I na d d i t i o n ,
medical racism is a culprit in the increased preterm birth rates in non-white
women in the US57, and inequalities that can manifest in different forms—
such as maternal stress and environmental exposure to toxins due to his-
torical redlining—can contribute to preterm birth risk, as surveyed by
epigenetic and gene-environment interaction studies58. Thus, it is crucial to
adopt an intersectional approach to studying women’s health conditions,
taking into account how cultural, soc ioeconomic, geographic, and racial
disparity factors influence patients’ outcomes and healthcare experiences,
which can inform a more holistic understanding of disease and contribute to
improved approaches to care. A good first step would be to recruit larger,
more diverse cohorts for studies to represent more realistic patient popu-
lations. Studies of women’s reproductive health should not focus solely on a
person’s ability to have children or not but consider the individual holi-
stically, including mental health and quality of life.
Challenges going forward will not necessarily be generating sufficient
amounts of data for computational a nalyses but accurate phenotyping
strategies, refining the analytical methods to gain greater biological insights,
expanding on computational drug discovery opportunities for the
advancement of therapeutics,finding ways that large language models and
other new technological developments can enable discoveries, and bringing
closer to reality the promise of precision medicine. Integrating and ana-
lyzing different types of -omics data to study women’sh e a l t hc o n d i t i o n sc a n
provide revelations in causes of disease and targets for treatment
59.M u l t i -
omics approaches have resulted in greater insights into biological signals
associated with term and preterm birth 60,61 and could be increasingly
leveraged to better understand pregnancy and other women’sh e a l t hc o n -
ditions. Moreover, digital twins c an provide a data-driven way of mon-
itoring, modeling, and managing conditions that can be tailored to an
individual’s specific needs by integrating real-time data from various sources
(e.g., clinical records, sensors, mobilehealth tracking applications, wearable
devices) and artificial intelligence
62. Digital twin technology could offer a
transformative approach to women’s reproductive health, from identifying
potential pregnancy complication s early to managing endometriosis
symptoms,finding optimal drugs and doses for treatments, and more. It is
imperative, however, that we ensure discoveries from future research and
technologies developed for women’s reproductive health do not widen the
gap between those who are well-represented and privileged and those from
under-represented and under-resourced backgrounds. Expanding on how
we leverage molecular, clinical, sociocultural, and other data combined with
robust computational integrative a pproaches for discoveries while we
prioritize broader representation in studies will benefitn o tj u s tw o m e n’s
reproductive health but all areas of human health for everyone.
Received: 1 February 2024; Accepted: 20 April 2024;
References
1. Institute of Medicine, Board on Population Health and Public Health
Practice, & Committee on Women ’s Health Research. Women’s
Health Research: Progress, Pitfalls, and Promise(National Academies
Press (US), Washington (DC), 2010).
2. Institute of Medicine (US) Committee on Understanding the Biology of
Sex and Gender Differences.Exploring the Biological Contributions to
Human Health: Does Sex Matter? (National Academies Press (US),
Washington (DC), 2001).
3. Of fice of Research on Women ’s Health. History of Women’s
Participation in Clinical Research. https://orwh.od.nih.gov/toolkit/
recruitment/history (2019).
4. Institute of Medicine (US) Committee on Women ’s Health Research.
Introduction. In Women’s Health Research: Progress, Pitfalls, and
Promise. (ed. Grossblatt, N.) (National Academies Press (US),
Washington, DC, 2010).
https://doi.org/10.1038/s44294-024-00019-x Perspective
npj Women's Health | (2024) 2:14 4
5. Smith, K. Women’s Health Research Lacks Funding —these Charts
Show How. https://www.nature.com/immersive/d41586-023-01475-
2/index.html (2023).
6. Mirin, A. A. Gender disparity in the funding of diseases by the U.S.
National Institutes of Health. J. Womens Health 2002 30,
956–963 (2021).
7. Fisk, N. & Atun, R. Systematic analysis of research underfunding in
maternal and perinatal health. BJOG Int. J. Obstet. Gynaecol 116,
347–356 (2009).
8. Rice, L. W. et al. Increasing NIH funding for academic departments of
obstetrics and gynecology: a call to action. Am. J. Obstet. Gynecol.
223, 79.e1–79.e8 (2020).
9. Giudice, L. C. Clinical practice. Endometriosis. N. Engl. J. Med. 362,
2389–2398 (2010).
10. Bunis, D. G. et al. Whole-tissue deconvolution and scRNAseq analysis
identify altered endometrial cellular compositions and functionality
associated with endometriosis. Front. Immunol. 12, 788315 (2022).
11. Oskotsky, T. T. et al. Identifying therapeutic candidates for
endometriosis through a transcriptomics-based drug repositioning
approach. iScience 109388 https://doi.org/10.1016/j.isci.2024.
109388 (2024).
12. Blencowe, H. et al. National, regional, and worldwide estimates of
preterm birth rates in the year 2010 with time trends since 1990 for
selected countries: a systematic analysis and implications. Lancet
Lond. Engl. 379, 2162–2172 (2012).
13. Vora, B. et al. Meta-analysis of maternal and fetal transcriptomic data
elucidates the role of adaptive and innate immunity in preterm birth.
Front. Immunol. 9, 993 (2018).
14. Le, B. L., Iwatani, S., Wong, R. J., Stevenson, D. K. & Sirota, M.
Computational discovery of therapeutic candidates for preventing
preterm birth. JCI Insight 5, e133761, 133761 (2020).
15. Zhang, G. et al. Genetic associations with gestational duration and
spontaneous preterm birth. N. Engl. J. Med. 377, 1156–1167 (2017).
16. Panagopoulos Abrahamsson, D. et al. A comprehensive non-targeted
analysis study of the prenatal exposome. Environ. Sci. Technol. 55,
10542–10557 (2021).
17. Knijnenburg, T. A. et al. Genomic and molecular characterization of
preterm birth. Proc. Natl Acad. Sci. USA 116, 5819–5827 (2019).
18. Kosti, I., Lyalina, S., Pollard, K. S., Butte, A. J. & Sirota, M. Meta-
analysis of vaginal microbiome data provides new insights into
preterm birth. Front. Microbiol. 11, 476 (2020).
19. Huang, C. et al. Meta-analysis reveals the vaginal microbiome is a better
predictor of earlier than later preterm birth.
BMC Biol. 21, 199 (2023).
20. Minot, S. S. et al. MaLiAmPi enables generalizable and taxonomy-
independent microbiome features from technically diverse 16S-
based microbiome studies. Cell Rep. Methods 3, 100639 (2023).
21. Golob, J. L. et al. Microbiome preterm birth DREAM challenge:
crowdsourcing machine learning approaches to advance preterm
birth research. Cell Rep. Med. 101350 https://doi.org/10.1016/j.xcrm.
2023.101350 (2023).
22. DiGiulio, D. B. et al. Temporal and spatial variation of the human
microbiota during pregnancy. Proc. Natl Acad. Sci. USA 112,
11060–11065 (2015).
23. Corwin, E. J. et al. Protocol for the Emory University African American
vaginal, oral, and gut microbiome in pregnancy Cohort study. BMC
Pregnancy Childbirth 17, 161 (2017).
24. Ye, C. et al. The periodontopathic bacteria in placenta, saliva and
subgingival plaque of threatened preterm labor and preterm low birth
weight cases: a longitudinal study in Japanese pregnant women.Clin.
Oral Investig. 24, 4261–4270 (2020).
25. Liao, J. et al. Microdiversity of the vaginal microbiome is associated
with preterm birth. Nat. Commun. 14, 4997 (2023).
26. Rana, S., Lemoine, E., Granger, J. P. & Karumanchi, S. A.
Preeclampsia: pathophysiology, challenges, and perspectives. Circ.
Res. 124, 1094–1112 (2019).
27. Leavey, K. et al. Unsupervised placental gene expression pro filing
identifies clinically relevant subclasses of human preeclampsia.
Hypertension Dallas, TX 1979 68, 137–147 (2016).
28. Broekhuizen, M. et al. The placental innate immune system is altered
in early-onset preeclampsia, but not in late-onset preeclampsia.
Front. Immunol. 12, 780043 (2021).
29. Callahan, T. J. et al. Knowledge-driven mechanistic enrichment of the
preeclampsia ignorome. In Biocomputing 2023 (eds Altman, R. B.
et al.) 371–382 (World Scientific, 2022).
30. Admati, I. et al. Two distinct molecular faces of preeclampsia revealed
by single-cell transcriptomics. Medicine 4, 687–709.e7 (2023).
31. The White House Of fice of the Press Secretary to President George W.
Bush. A New Generation of American Innovation. https://
georgewbush-whitehouse.archives.gov/infocus/technology/
economic_policy200404/chap3.html (2004).
32. Adler-Milstein, J. & Jha, A. K. Sharing clinical data electronically: a
critical challenge for fixing the health care system. JAMA 307,
1695–1696 (2012).
33. All of Us Research Program NIH. All of Us Seeks Input on Broadening
Participants’ Electronic Health Record Data. https://allofus.nih.gov/
news-events/announcements/all-us-seeks-input-broadening-
participants-electronic-health-record-data (2022).
34. Christ, J. P. et al. Incidence, prevalence, and trends in endometriosis
diagnosis: a United States population-based study from 2006 to
2015. Am. J. Obstet. Gynecol. 225, 500.e1–500.e9 (2021).
35. Shafrir, A. L. et al. Validity of self-reported endometriosis: a
comparison across four cohorts. Hum. Reprod. 36,1 2 6 8–1278
(2021).
36. Burton, C. et al. Pointers to earlier diagnosis of endometriosis: a
nested case-control study using primary care electronic health
records. Br. J. Gen. Pract. 67, e816–e823 (2017).
37. Hsu, A. L. et al. Coronavirus disease 2019 (COVID-19) disease
severity: pregnant vs. nonpregnant women at 82 facilities.Clin. Infect.
Dis 74, 467–471 (2022).
38. Molina, R. L. et al. Comparison of pregnancy and birth outcomes
before vs. during the COVID-19 pandemic. JAMA Netw. Open 5,
e2226531 (2022).
39. Miller, M. J. et al. Impact of COVID-19 on cervical cancer screening
rates among women aged 21 –65 years in a large integrated health
care system—Southern California, January 1 –September 30, 2019,
and January 1–September 30, 2020. Morb. Mortal. Wkly. Rep. 70,
109–113 (2021).
40. Amit, G. et al. Antidepressant use during pregnancy and the risk of
preterm birth – a cohort study. npj Womens Health 2,1 –7 (2024).
41. Ross, L. E. et al. Selected pregnancy and delivery outcomes after
exposure to antidepressant medication: a systematic review and
meta-analysis. JAMA Psychiatry 70, 436–443 (2013).
42. Eke, A. C., Saccone, G. & Berghella, V. Selective serotonin reuptake
inhibitor (SSRI) use during pregnancy and risk of preterm birth: a
systematic review and meta-analysis. BJOG Int. J. Obstet. Gynaecol.
123, 1900–1907 (2016).
43. Abraham, A. et al. Dense phenotyping from electronic health records
enables machine learning-based prediction of preterm birth. BMC
Med. 20, 333 (2022).
44. Huang, H. et al. Investigation of association between environmental
and socioeconomic factors and preterm birth in California. Environ.
Int. 121, 1066–1078 (2018).
45. Oh, S. S. et al. Diversity in clinical and biomedical research: a promise
yet to be ful filled. PLoS Med. 12, e1001918 (2015).
46. Ibrahim, H., Liu, X., Zariffa, N., Morris, A. D. & Denniston, A. K. Health
data poverty: an assailable barrier to equitable digital health care.
Lancet Digit. Health 3, e260–e265 (2021).
47. Kons, K. M. et al. Exclusion of reproductive-aged women in COVID-19
vaccination and clinical trials. Women’s Health Issues 32,
557–563 (2022).
https://doi.org/10.1038/s44294-024-00019-x Perspective
npj Women's Health | (2024) 2:14 5
48. Oskotsky, T. et al. Nurturing diversity and inclusion in AI in
Biomedicine through a virtual summer program for high school
students. PLoS Comput. Biol. 18, e1009719 (2022).
49. Rothman, K. J. Epidemiology: An Introduction (Oxford University
Press, 2012).
50. Innes, G. K. et al. The measurement error elephant in the room:
challenges and solutions to measurement error in epidemiology.
Epidemiol. Rev 43,9 4–105 (2022).
51. Greenland, S. & Morgenstern, H. Confounding in health research.
Annu. Rev. Public Health 22, 189–212 (2001).
52. Mahajan, R. et al. Standardized Protocol Items Recommendations for
Observational Studies (SPIROS) for observational study protocol
reporting guidelines: protocol for a Delphi Study.JMIR Res. Protoc. 9,
e17864 (2020).
53. Ehrenstein, V. et al. Helping everyone do better: a call for validation
studies of routinely recorded health data. Clin. Epidemiol. 8,
49–51 (2016).
54. Bolignano, D. et al. The quality of reporting in clinical research: the
CONSORT and STROBE initiatives. Aging Clin. Exp. Res. 25,
9–15 (2013).
55. Tonzani, S. & Fiorani, S. The STAR methods way towards
reproducibility and open science. iScience 24, 102137 (2021).
56. Fourquet, J. et al. Disparities in healthcare services in women with
endometriosis with public vs private health insurance. Am. J. Obstet.
Gynecol. 221, 623.e1–623.e11 (2019).
57. Balascio, P. et al. Measures of racism and discrimination in preterm
birth studies. Obstet. Gynecol. 141,6 9–83 (2023).
58. Hong, X., Bartell, T. R. & Wang, X. Gaining a deeper understanding of
social determinants of preterm birth by integrating multi-omics data.
Pediatr. Res. 89, 336–343 (2021).
59. Hasin, Y., Seldin, M. & Lusis, A. Multi-omics approaches to disease.
Genome Biol. 18, 83 (2017).
60. Ghaemi, M. S. et al. Multiomics modeling of the immunome,
transcriptome, microbiome, proteome and metabolome adaptations
during human pregnancy. Bioinformatics 35,9 5–103 (2019).
61. Espinosa, C. A. et al. Multiomic signals associated with maternal
epidemiological factors contributing to preterm birth in low- and
middle-income countries. Sci. Adv. 9, eade7692 (2023).
62. Sun, T., He, X. & Li, Z. Digital twin in healthcare: recent updates and
challenges. Digit. Health 9, 20552076221149651 (2023).
Acknowledgements
The authors would like to thank Jean Costello, Claire Dubin, and Boris
Oskotsky for their helpful discussion and advice. This work was funded by
the National Institutes of Health (NIH) Eunice Kennedy Shriver National
Institute of Child Health and Human Development (NICHD) [P01 HD106414-
01, P01 HD106414-02, R01 HD105256] and the March of Dimes Prematurity
Research Center at UCSF [60982053-50185]. The funders played no role in
the study design, data collection, analysis and interpretation of data, or the
writing of this manuscript.
Author contributions
T.T.O., O.Y., U.K., L.A. and M.S. wrote the main manuscript text, and T.T.O.
and M.S. prepared Fig. 1. All authors reviewed the manuscript.
Competing interests
The authors declare no competing interests.
Additional information
Correspondenceand requests for materials should be addressed to
Tomiko T. Oskotsky or Marina Sirota.
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