Section 3
There are hundreds of tumor suppressor genes that possess the ability to stop or slow down the carcinogenesis process. The activation of tumor suppressors is mostly context-dependent and varies by organ site and by molecular and pathological sub-type. The most common and important tumor suppressors, their role in tumorigenesis and approaches to target these genes for cancer treatment and prophylaxis are discussed in the following sections and summarized in Fig. 1 .
The retinoblastoma ( Rb ) gene was the first tumor suppressor gene to be described. The development of retinoblastoma was predicted by Alfred Knudsen to involve a “two hit” mechanism, based on the kinetics of appearance of retinoblastoma in the inherited form (single order kinetics) and the sporadic form (second order kinetics). This analysis led to the hypothesis that disease initiation requires two steps involving loss of function of both copies of the affected gene. Thus, Rb was recognized to have a tumor suppressor function long before the gene was identified and demonstrated to be inactivated by mutation of one copy and loss or silencing of the second copy [ 5 ]. The Rb protein (pRb) also plays a key role in integrating diverse signals from intra- and extracellular sources and thus driving cell cycle progression. In cells in the G0/G1 phase, pRb, which is in a hypophosphorylated state, binds to the transcription factor E2F family and suppresses E2F-mediated gene transcription. The E2F family encodes a variety of genes involved in cell cycle progression, DNA replication, DNA damage repair, cell cycle checkpoint, and apoptosis [ 6 ]. Therefore, inhibition of the E2F family by pRb results in the suppression of cell cycle progression. However, the cyclin D/CDK4 complex phosphorylates pRB and allows E2Fs to bind their target genes by disrupting the formation of the pRB-E2F complex [ 7 ]. In addition to controlling cell cycle progression, pRB is also involved in the regulation of DNA replication, differentiation, and apoptosis [ 7 ].
In head and neck squamous cell cancers (HNSCC), loss or mutation of Rb is uncommon [ 1 ], but frequent inactivation by loss, mutation and/or methylation of p16 (CDKN2/MTS-1/INK4A) was observed in the majority of tumors [ 8 ]. In fact, p16ink4a was first called the multiple tumor suppressor gene-1 (MTS-1) because it is so commonly inactivated in many tumor types (melanoma, breast, head and neck, etc.). Abnormalities in CDKN2A RB1 are found in greater than 70% of lung squamous cancers [ 9 ], consistent with the observations in HNSCC. The p16 protein regulates Rb by acting as an inhibitor of the cyclin dependent kinases that phosphorylate Rb, thereby allowing the E2F family of transcription factors to initiate expression of genes involved in entry into the cell cycle. In an important feedback loop, E2F upregulates p16ink4a protein expression, which inactivates the cyclinD1/CDK4/6 complex ( Figure 2 ). With CDK4/6 inactivated, Rb is de-phosphorylated by ubiquitous phosphatases and re-sequesters E2F, preventing cell cycle entry.
The tumor suppressor p53 family consists of three members, p53, p63 and p73, sharing overlapping anti-growth functions, such as cell cycle arrest, apoptosis and DNA repair. TP53 is very frequently targeted by mutation and loss in cancer. In the recent report of The Cancer Genome Atlas (TCGA) assessment of squamous cell lung cancers, the most common significantly mutated gene was TP53 [ 9 ]. Mutation and loss of p53 are very common in cancers related to carcinogens in tobacco smoke, such as lung, head and neck, bladder, etc, but are less common in breast and prostate cancers that have hormonal, genetic and diet-related etiologic factors. In a subset of cancers that retain wild type p53, loss of p14 ARF can result in unopposed activity of MDM2, which is a transcriptional target and a negative regulator of p53. MDM2 is a p53-specific E3 ubiquitin ligase that physically interacts with p53, causing its mono-ubiquitination and thus its degradation [ 10 ]. Disruption of the p53-MDM2 interaction leads to p53 induction and its biological response such as cell cycle arrest, DNA damage repair and apoptosis. In this subset, MDM2 inhibitors are effective at restoring p53 function leading to growth inhibition and induction of apoptosis [ 11 ].
In cancers caused by oncogenic viruses, such as the high risk human papilloma viruses (hrHPV), which are implicated in anogenital and oropharyngeal cancers, p53 and p16ink4a are nearly always wild type. Currently, 70–90% of oropharyngeal cancers diagnosed at the University of Michigan contain hrHPV [ 12 ]. The viral oncogenes E6 and E7 target and inactivate p53 and Rb, respectively. E7 binds to Rb protein preventing it from binding to E2F, which then activates continuous transcription of genes involved in cell cycle entry and of p16 ( Figure 3 ). For this reason, overexpression of p16 is a useful surrogate for hrHPV infection. These tumors are also more responsive to therapy, most likely because the p53 and Rb genes are intact, and after treatment can still function if the virus is inactivated by chemotherapy and radiation. However, some HPV-positive tumors are also controlled by surgery [ 13 ], suggesting that an immune response to the virus may assist in eliminating the tumor.
Mutation and loss of p53 function can be an Achilles heel for cytotoxic therapies such as cisplatin. Cisplatin binds to DNA to cause its cytotoxic effect. When p53 is compromised by mutation it is less effective in causing cell cycle arrest and DNA repair. Thus, the degree of lethal damage to tumor cells caused by cisplatin is often increased when p53 is mutated or inactivated because the cell cannot undergo p53-mediated cell cycle arrest and p53-mediated DNA repair.
DNA damage or stress response mediated by chemicals, UV irradiation, or oncogenic mutation results in the stabilization and accumulation of p53 [ 14 , 15 ]. Activated p53 can bind to specific DNA sequences in the promoter region of its target genes, including p21, B-cell lymphoma 2 (Bcl2)-associated X protein (Bax), p53 upregulated modulator of apoptosis (PUMA), and growth arrest and DNA damage (GADD45), mediating cell cycle arrest, senescence, and apoptosis [ 16 ]. In contrast to these suppressive roles, mutant p53 loses these functions and serves as an oncogene by physically interacting with other proteins and thus modulating their cellular function [ 17 ]. For example, the interaction between mutant p53 and p63 results in the decreased tumor suppressive activity of p63 [ 17 ]. A recent report suggests that the interaction of mutant p53 with Smad negatively regulates p63, leading to cancer cell metastasis [ 18 ]. Mutant p53 is also known to associate with several transcription factors, such as specificity protein 1 (Sp1), Ets-1, and vitamin D receptor (VDR), resulting in the transactivation of their oncogenic target genes [ 17 ].
Although p53 is inactivated through deletion or mutation in about half of all cancers, mutation of p63 and p73 are extremely rare in human cancers [ 19 – 23 ], although their expression is frequently dysregulated in human tumors [ 19 ]. p73 mRNA and/or protein were shown to be upregulated in breast [ 24 , 25 ], ovarian [ 26 ], hepatocellular [ 27 ], neuroblastoma [ 28 ], bladder [ 29 ], prostate [ 30 ], thyroid [ 31 ], B-cell chronic leukemias [ 32 ] and colorectal [ 33 ] cancers, and lost in pancreatic adenocarcinoma [ 34 ]. Expression of ΔNp73 isoforms was also increased in head and neck cancers [ 35 ]. These members of the p53 family are also targets of many anti-cancer drugs including those frequently used in the clinic such as cisplatin.
PTEN is often lost or inactivated in multiple solid tumor types including prostate, breast, thyroid, and endometrial tumors and others [ 36 ]. PTEN is a critical regulator of signaling through the PI3K pathway through its action as a PIP3 phosphatase, thereby negatively regulating the PI3K-AKT-mTOR pathway. In the absence of PTEN, unregulated cell proliferation occurs through activation of a cascade of signals downstream in the AKT pathway. Fortunately, mTOR inhibitors [ 37 ] and mitogen/extracellular signal-regulated kinase (MEK) inhibitors [ 38 ] are being developed that can target these pathways, providing a strategy to counter this common tumor suppressor loss. For instance, mTOR inhibitors such as everolimus and temsirolimus targeting the PI3/AKT pathway, which is overexpressed as a consequence of PTEN loss, have been shown to improve median overall survival in renal cell carcinomas and pancreatic neuroendocrine carcinomas.
Loss or inactivation of PTEN also inactivates the forkhead box “O” (FOXO) family of tumor suppressors through AKT. The family consists of four members, FOXO1 (also known as FKHR), FOXO3a (also known as FKHRL1), FOXO4 (also known as AFX or MLLT7), and FOXO6. FOXO proteins are well characterized tumor suppressors: simultaneous somatic deletions of FOXO1, 3 and 4 alleles generates thymic lymphomas and systemic hemagiomas in mice (reviewed in [ 39 ]). FOXOs are direct substrates of AKT and AKT-dependent phosphorylation sequesters them in the cytoplasm and promotes their degradation through ubiquitylation, thus inactivating them. FOXOs can undergo multiple other post-translational modifications (PTMs) [ 39 ], which affect their transcriptional activity and contribute to tumor initiation, progression and drug action. FOXO proteins transcribe genes involved in G0/G1 cell cycle transition (p21, p27, p15, p19), G2/M transition (GADD45, cyclin G2 and Polo-like kinase 1) and apoptosis (BIM, BCL6, PUMA, TNF-related apoptosis-inducing ligand [TRAIL], etc). Since FOXOs are mostly inactivated through activation of PI3K-AKT pathways, these tumor suppressors can be easily activated by targeting PI3K-AKT pathways. Multiple small molecule inhibitors have been developed that target PI3K or AKT and many of them are currently under clinical investigation.
The Hippo signaling pathway has emerged as a central regulator of growth, connecting processes such as adhesion, cell polarity, and cell density with increases in cell number [ 40 – 42 ]. Overcoming the upstream regulators of the Hippo pathway may be a prerequisite, or hallmark feature, of certain cancer cell types [ 43 ].
The core Hippo pathway is highly conserved, and functions to restrict growth during development by limiting the output of precursor cells [ 42 ]. In this pathway, the Ste20-like kinase MST1/2 (Hippo) works with the adaptor Salvador (SAV) to phosphorylate and activate the nuclear Dbf2-related (NDR)-like kinase large tumor suppressor kinase (LATS1/2). In turn, LATS activity with the adaptor, MOB, results in the phosphorylation of Yes-associated protein (YAP) and transcriptional coactivator with PDZ-binding motif (TAZ) ( Figure 4 ) [ 41 , 42 ]. This phosphorylation of YAP leads to its accumulation in the cytoplasm where it has been shown to associate with 14-3-3, angiomotin (AMOT), or catenin α1 (CTNNA1) [ 44 , 45 ]. The phosphorylation and exclusion of YAP from the nucleus is critical because it prevents its activity as a transcriptional coactivator. If it enters the nucleus, YAP increases cell production, both through proliferation and the inhibition of cell death. Hence, the loss of core components such as MST or LATS prevents YAP/TAZ phosphorylation and activates YAP targets. The cytoplasmic association of YAP/TAZ with AMOT and CTNNA1 is also significant, because when these cytoskeletal or cell adhesion scaffolds are disrupted, the cytosolic pool of YAP/TAZ changes. Thus, disruption of adhesion, cytoskeletal, and cell polarity proteins can drive cell proliferation through YAP. There are numerous additional regulators of core pathway members, including: cadherin 1 (CDH1), CD44, FERM domain containing 6 (FRMD6), protein associated with Lin Seven 1 (PALS1), PATJ, AJUBA, Ras-associated family members (RASSF), and G-protein coupled receptors (GPCRs) [ 40 , 41 ]. The relative contributions of these multiple inputs to the core members is not resolved, although it is likely that several such inputs may exist at any one time in the same cell.
Loss of core Hippo pathway components, or hyperactivation of YAP/TAZ, in adult mouse precursor cells has been shown to result in hyperplasia and tumorigenesis [ 40 , 42 ]. Overall, this suggests that Hippo pathway disruption promotes cancer [ 40 ]. Consistent with this notion, YAP has been observed to undergo copy number amplification in both human cancer and mouse cancer models [ 46 , 47 ]. The Hippo pathway regulator neurofibromatosis 2 (NF2) provides another example of how cancer may result through YAP activation. NF2 is listed in the Catalogue of Somatic Mutations in Cancer ( COSMIC ) gene database and NF2 loss of function results in the formation of schwanommas [ 40 , 48 – 50 ]. Functional assays have shown that NF2 regulates YAP activity, and YAP is required for the overgrowth observed when NF2 is lost in vivo [ 51 ].
Genomic analyses by TCGA or COSMIC do not show an enrichment of core Hippo pathway members in cancer [ 40 ]. It is unclear why this is the case. Perhaps unidentified components, which link cell adhesion or cytoskeletal proteins with the Hippo pathway, are lost in cancers rather than the core members. Alternatively, epigenetic factors that regulate the expression of core Hippo components could be disrupted in cancer. Regulation of the Hippo pathway by other signaling processes is another means through which cancer cells overcome the growth restrictions normally imposed on tissue cells by the Hippo pathway [ 40 ]. For instance, the Wnt signaling pathway component dishevelled segment polarity protein 1 (DVL1) binds to phosphorylated YAP/TAZ, inhibiting Wnt signaling [ 52 , 53 ]. Thus, loss of Hippo activity could de-phosphorylate YAP and simultaneously activate the Wnt pathway. Hyperactive Wnt itself is thought to drive colorectal cancer through the activation of its target, catenin β1 (CTNNB1) [ 54 ], and YAP can bind and synergize with CTNNB1 in some contexts [ 55 ]. The disruption of Hippo signaling could be quite significant in cancer by enabling proliferation through multiple other pathways.
YAP/TAZ function as transcriptional coactivators of transcription factors such as p73, TEA domain family member 1 (TEAD), SMAD, and possibly others [ 40 , 42 ]. YAP/TAZ nuclear activity increases the transcription of many genes including baculoviral IAP repeat-containing proteins (BIRC) 2 and 5, marker of proliferation Ki67, connective tissue growth factor (CTGF), and amphiregulin [ 56 – 58 ]. Such targets reveal how YAP activity leads to increased cell production: Ki67 leads to greater proliferation, CTGF and amphiregulin influence further signaling processes, and BIRC2/5 inhibit apoptosis. Moreover, Hippo and Wnt, or transforming growth factor (TGF)-β signaling are integrated [ 41 ], and some work on intestinal precursors reveals that the Janus kinase 2 (JAK)/signal transducer and activator of transcription (STAT) and epidermal growth factor (EGF) pathways may also be activated through YAP [ 59 , 60 ]. The effects of Hippo signaling disruption could therefore influence the output of multiple signaling pathways that regulate the hallmarks of cancer [ 43 ].
Since the Hippo pathway suppresses cell growth by inhibiting YAP/TAZ, the desired intervention is to either enhance Hippo signal transduction or to inhibit YAP/TAZ activity. Drugs inhibiting the core kinases are not useful, but it may be possible to develop drugs targeting the phosphorylation sites on YAP/TAZ, which are known [ 41 , 42 ], or drugs that prevent the activity of YAP/TAZ. For instance, small molecule screening has revealed three porphyrins that prevent the association of YAP with TEAD transcription factors [ 61 ]. One of these, verteporfin, is already applied clinically to treat macular degeneration. It is therefore possible that porphyrins could be applied in treating cancers where NF2 function has been lost without impacting normal tissue function.
A recent report has shown that GPCR signaling can both stimulate and repress the core Hippo kinases [ 62 ]. The GPCR agonists, lysophosphatidic acid (LPA) and sphingosine 1-phosphate (S1P), can inhibit the core Hippo pathway member, LATS, which directly phosphorylates and inhibits YAP/TAZ. However, GPCR activation can also produce the opposite outcome. Adrenergic receptors, for instance stimulated by epinephrine, can actually increase the phosphorylation of YAP/TAZ by LATS, meaning that Hippo signal transduction can be enhanced [ 62 ]. GPCR signaling is complex in that the involved ligands, GPCRs, and G-α proteins work in a combinatorial and tissue-specific fashion. This specificity presents an opportunity to develop context-specific interventions that inhibit proliferation by agonizing the activity of LATS.
The Hippo pathway is just one of many mechanisms that suppress growth, but its disruption has extremely potent effects on cell proliferation. Future treatments of cancers that evade Hippo pathway growth suppression are likely to involve inhibition of YAP or enhancement of the upstream Hippo components that negatively regulate it.
GDF15, also known as nonsteroidal anti-inflammatory drug (NSAID)-activated gene-1 (NAG-1), macrophage inhibitory cytokine 1 (MIC-1), placental TGF-β (PTGF-β), prostate differentiation factor (PDF), and placental bone morphogenetic protein (PLAB), is structurally similar to TGF-β [ 63 ]. TGF-β has established roles as both a growth suppressor and growth stimulator in cancer cells. Similarly, GDF15 exhibits growth suppressive and growth-promoting effects, which may depend in part on the stage of disease [ 64 , 65 ]. In comparison to other cytokines and transcription factors, GDF15 has not been extensively studied in the context of cancer cell growth suppression. However, accumulating data suggest that GDF15 has multiple functions in cancer cells, including roles in the evasion of anti-growth signaling.
The growth-suppressing function of GDF15 may be due in part to the presence of p53 response elements within its promoter. GDF15 is a p53 transcriptional target that mediates G1 cell cycle arrest and apoptosis [ 66 , 67 ]. In addition to its p53-dependent activity, GDF15 has been shown to reduce cancer cell growth through other mechanisms. The Krüppel-like factor 4 (KLF4) tumor suppressor also binds to the GDF15 promoter and initiates transcription of GDF15 in pancreatic cancer cells [ 68 ]. Other transcriptional mediators of GDF15 identified in colorectal cancer cell lines include Sp1, Sp3, and early growth response 1 (EGR1) [ 69 , 70 ]. Finally, peroxisome proliferator-activated receptor gamma (PPARγ) ligand has been shown to induce GDF15 expression in pancreatic and colon cancers [ 68 , 71 , 72 ]. Thus, there are several major transcriptional regulators of growth suppression that upregulate GDF15. However, similar to TGF-β, GDF15 also exhibits growth-promoting effects. In fact, serum levels of GDF15 are frequently elevated in patients with various types of cancer, including pancreatic, prostate, and ovarian cancers. Therefore, although GDF15 appears to play a role in regulating the growth of cancer cells, its exact functions and mechanisms of action remain incompletely defined and may vary depending on cellular and disease context. In addition, GDF15 is upregulated by various signaling molecules, such as mitogen-activated protein kinase (MAPK) family members. Various chemical compounds, including 12-O-tetradecanoylphorbol-13-acetate (TPA), vitamin E, NSAID agents, and the proteasome inhibitor MG132 induce the transcription of GDF15/NAG-1 in a p38 MAPK-dependent manner [ 73 – 76 ]. Interestingly, MG132 increased GDF15 at the promoter level and stabilized the GDF15 transcript. In addition to being regulated by MAPK signaling, GDF15 expression is regulated by PI3K/Akt/glycogen synthase kinase-3 beta (GSK-3β) signaling [ 77 ], with PI3K inhibition inducing GDF15/NAG-1 expression. However, pharmacological inhibition or genetic knockdown of GSK-3β, which is negatively regulated by PI3K/Akt, blocks the upregulation of GDF15/NAG-1 in response to PI3K inhibition. Thus, PI3K signaling may suppress GDF15 expression in some contexts, whereas PI3K/Akt inhibitors induce GDF15 via GSK-3β. This induction of GDF15 may contribute to the growth suppressive or apoptotic effects of pharmacological PI3K inhibitors. Conversely, PI3K/MAPK signaling pathways are also implicated in the growth-promoting effects of GDF15. Stimulation or overexpression of GDF15 induces phosphorylation of Akt, p38 MAPK, and extracellular signal-regulated kinases (ERK1/2) in breast and ovarian cancer cells [ 78 , 79 ]. These seemingly paradoxical results suggest context-dependent effects and possible feedback pathways that regulate GDF15 expression and/or activity.
GDF15 has potential roles in growth suppression as well as in metastasis and invasion. Increased circulating levels of secreted GDF15 or increased tissue expression are reported in patients with colorectal [ 80 ], ovarian [ 78 , 81 , 82 ], prostate [ 83 – 85 ], pancreatic [ 86 , 87 ], breast [ 88 ], and bladder [ 89 ] cancers and in the cerebrospinal fluid of patients with glioblastoma [ 90 ], suggesting that GDF15 may serve as a cancer biomarker and potential therapeutic target in advanced cancers. However, targeting GDF15 must be carefully considered, given its possible role in the growth suppression of early-stage cancers. Increased metastasis, invasiveness, proliferation, and migration have been observed in the presence of GDF15 overexpression. However, the signaling pathways contributing to these biological events appear to vary between cancer types and remain largely uncharacterized.
GDF15 stimulates proliferation via ERK activation in prostate cancer cell lines [ 91 – 93 ]. GDF15 stimulation has been shown to activate phosphorylation of the receptor tyrosine kinase human epidermal growth factor receptor 2 (erbB2/HER2) [ 79 , 94 ]. Src inhibition partially disrupts this phosphorylation [ 79 ], suggesting that GDF15 may mediate crosstalk to HER2 from another unidentified receptor. GDF15 stimulation results in reduced response to the HER2 monoclonal antibody, trastuzumab [ 79 ], and knockdown of GDF15 improves response to trastuzumab [ 79 ]. MAPK and PI3K/mTOR signaling pathways are activated by GDF15 [ 78 , 79 ]; for example, mTOR inhibition by rapamycin overcomes the increased invasive phenotype of GDF15-stably transfected ovarian cancer cells [ 78 ]. Further, this GDF15-mediated invasion is matrix metalloproteinase (MMP)-dependent [ 78 ]. Increases in gelatinolytic activity and upregulation of the urokinase plasminogen activator (uPA) system are also linked to GDF15-mediated invasiveness in gastric cancer cell lines but in an ERK1/2-dependent manner [ 95 ]. The role of TGF-β receptor in this process and the exact signaling mechanisms that mediate resistance and invasion in GDF15-overexpressing breast or ovarian cancer cells remain to be established.
GDF15 serum levels are increased in colon cancer patients treated with non-steroidal anti-inflammatory drugs in association with reduced tumor recurrence [ 80 ]. Non-synonymous protein-coding single nucleotide polymorphisms (nsSNPs) that cause a cytosine-to-guanine (C-to-G) substitution at exon 202 of the GDF15 precursor protein have been identified in patients with prostate cancer. This substitution, known as H6D, is associated with a reduced risk of developing prostate cancer [ 96 – 98 ]. However, one study showed that prostate cancer patients with this CG mutation suffered a higher mortality rate versus the CC genotype [ 97 ]. Thus, the exact functional changes induced by the mutation and the validity of this genetic change as a predictor of survival or cancer biomarker remain to be determined.
The strongest evidence that GDF15 suppresses tumor growth has been obtained in mouse models in which GDF15 overexpression decreased tumorigenesis in models of lung cancer [ 99 ], breast cancer [ 100 ], prostate cancer [ 101 ], glioblastoma [ 102 ], and colon carcinoma [ 103 ]. Further, GDF15 transgenic mice developed fewer carcinogen-induced lung [ 99 ] or colorectal [ 103 ] tumors relative to control mice. Cross-breeding of GDF15 transgenic and transgenic adenocarcinoma of the mouse prostate (TRAMP) mice resulted in significantly fewer tumors, which were lower in grade compared to those in the control TRAMP mice. However, tumors in GDF15/TRAMP mice showed increased metastasis [ 93 ]. These results are particularly intriguing given the paradoxical results that have been reported for GDF15 in the literature. The data suggest that GDF15 may function as a growth suppressor in pre-malignant or early stages of cancer, but that a pro-growth/pro-invasive phenotype is stimulated by GDF15 in advanced tumors.
GDF15 also has putative anti-inflammatory activities. GDF15 appears to suppress secretion of inflammatory cytokines from lipopolysaccharide-treated macrophages [ 63 ]. Indeed, GDF15 transgenic mice exposed to a carcinogen show reduced lung tissue inflammation than control mice, mediated by p38 MAPK inhibition, and increased caspase activity in lung cancers [ 99 ]. The primary receptor for GDF15 remains to be identified. Structural similarity with TGF-β suggests that GDF15 may be a ligand for the TGF-β receptor. Phosphorylation of the TGF-β substrate Smad2 occurs in response to GDF15 stimulation in breast cancer cells [ 79 ]; however, direct evidence of the receptor has not yet been provided in the literature. Further, the multiple forms of endogenous versus secreted GDF15 may have differential functions, including as a growth suppressor, mediator of invasion, and anti-inflammatory factor, which complicates drug development efforts targeting GDF15. However, its high circulating levels in metastatic forms of various cancers suggest that it may be a relevant predictor of disease progression and possibly a novel molecular target in metastatic cancers that are refractory to standard therapies.
The switching defective/sucrose nonfermenting (SWI/SNF) complex is an ATP-dependent, chromatin-remodeling, multiple-subunit enzyme critical for many biological processes including cellular differentiation and proliferation [ 104 , 105 ]. Several subunits of the complex are crucial for proliferation control and function as tumor suppressors in various cancer types [ 106 ]. It is estimated that loss of SWI/SNF complex components is a critical event in carcinogenesis in 10–20% of solid tumors [ 107 ]. ARID1A encodes a human homolog of yeast SWI1, which contains a DNA-binding motif (AT-rich interactive domain, ARID) and is an integral member of the SWI/SNF complex.
Mutations in ARID1A have been detected in a wide variety of human cancers, with the highest mutation frequency (~50%) occurring in carcinomas arising from endometriosis or endometrial tissue. ARID1A mutations have also been found in renal, gastric, and breast tumors, medulloblastoma, clear-cell ovarian carcinoma, endometrioid ovarian carcinoma, endometrioid endometrial cancer and transitional cell carcinoma [ 108 – 118 ].
ARID1A is located on chromosome 1p and its protein product is predominantly localized to the nucleus. ARID1A was initially discovered to be a p300/cAMP response element binding protein (CBP)-associated partner that participates in recruitment of the SWI/SNF complex to specific transcription sites [ 119 ]. ARID1A contains an AT-rich DNA-interacting domain (ARID) and a glucocorticoid receptor binding domain which stimulates glucocorticoid receptor-dependent transcriptional activation [ 120 ].
ARID1A mutation is highly associated with loss of ARID1A expression. However, ARID1A protein expression is also low or absent in some tumors that lack mutations in ARID1A. ARID1A is a nucleo-cytoplasmic protein whose stability depends on its subcellular localization. Nuclear ARID1A is less stable than cytoplasmic ARID1A because ARID1A is rapidly degraded by the ubiquitin-proteasome system in the nucleus [ 121 ]. Another study showed that the promoter region of ARID1A is highly methylated in many invasive breast cancers. Promoter hypermethylation correlates with decreased expression of ARID1A in invasive ductal carcinomas of the breast [ 122 ]. These results demonstrate that there are multifaceted mechanisms to regulate ARID1A expression that include ubiquitination and promoter hypermethylation.
ARID1A suppresses cancer cell growth through several distinct mechanisms: 1) Inhibition of cancer cell proliferation: restoration of wild-type ARID1A expression suppressed cellular proliferation, colony formation and tumor growth in mice, whereas gene silencing of ARID1A in non-transformed epithelial cells enhanced cellular proliferation and tumorigenicity [ 110 , 121 , 123 ]; 2) Differentiation: ARID1A knockdown disrupted differentiation of cultured osteoblasts. The C-myc promoter is a direct target of mammalian ARID1A containing the SWI/SNF complex during preosteoblast differentiation. ARID1A is required for repression of C-myc during differentiation [ 124 ]; 3) Apoptosis: shRNA-mediated ARID1A knockdown inhibited both Fas-induced caspase-8 cleavage and FAS-induced mitochondrial leakage and led to inhibition of Fas-mediated cell death in Jurkat T cells. Knockdown of ARID1A in a leukemia cell line also conferred resistance to Fas-mediated apoptosis [ 125 ]; 4) Cell adhesion: The SWI/SNF complex regulates the expression of several important cell-adhesion proteins, such as CD44 and E-cadherin, as well as extracellular matrix proteins including MMPs and integrins [ 107 ]. These proteins are known to play important roles in tumor progression and metastasis; 5) DNA repair: SWI/SNF is recruited to double-strand DNA break sites and is required for efficient DNA repair in vivo [ 105 ]; and 6) Immune surveillance: Major histocompatibility complex (MHC) class I and II gene expression is regulated by SWI/SNF [ 126 ]. Loss of SWI/SNF function may inhibit immune surveillance and decrease detection of tumor cells.
Finally, ARID1A mutation or loss of ARID1A expression has prognostic and predictive value in ovarian clear-cell carcinoma, gastric cancer, breast cancer, and bladder cancer [ 123 ] and loss of ARID1A in ovarian clear cell carcinoma correlated with worse prognosis in patients treated with platinum-based chemotherapy [ 127 ].
Over the past decade, oncologic signaling pathways (K-Ras, Wnt, β-catenin, etc) have emerged as being critical to the development of neoplasia. In addition to conventional pathways, primordial embryonic pathways have recently been thought to be integral to the initiation and maintenance of carcinogenesis. These include the Hedgehog and Notch embryonic pathways. In the process of carcinogenesis, aberrant regulation of these pathways leads to neoplasia. In addition to contributing to the process of carcinogenesis, dysregulation of Notch signaling has been shown to mediate chemotherapy resistance, facilitate epithelial to mesenchymal transition (EMT), and also maintain the cancer stem cell population.
Structurally, Notch signaling involves a transmembrane receptor and a transcription factor, which interacts with other nuclear proteins to control gene expression, thus transmitting growth and proliferation signals to the cell. Notch receptors are represented by four homologs in mammals (Notch1-Notch4), and contain a large extracellular domain and an intracellular signaling domain (NICD). Activation of Notch occurs through ligand binding. Two Notch ligand families, Jagged and Delta, have been described in mammals with five ligands identified to date (Jagged 1, 2, and Delta 1, 3, 4). After ligand binding, two successive proteolytic cleavage steps occur. The first step is mediated extracellularly by ADAM/TACE (a disintegrin and metalloprotease/tumor-necrosis factor (TNF) α converting enzyme) and occurs at the S2 cleavage site. The second step occurs at the S3 cleavage site and is mediated intramembranously by the γ-secretase complex, consisting of a catalytic subunit (presenilin 1 or 2), and accessory subunits (nicastrin, presenilin enhancer 2 [Pen-2], and anterior pharynx-defective 1 [Aph-1]). The resulting active form of NICD translocates to the nucleus where it binds a transcriptional repressor known as C promoter-binding factor (CBF-1, also known as recombination signal binding protein or immunoglobulin kappa J RBPJ), or CBF-1/suppressor of Hairless/Lag1 (CSL), converting it to a transcriptional activator. This NICD-CBF1 complex then activates the transcription of several downstream Notch target genes, such as Myc, p21, and Hes (hairy/enhancer of split) family members (for a review of the Notch signaling pathway and its role in cancer see [ 128 – 130 ]), which in turn act as transcriptional regulators of further downstream genes [ 131 – 134 ]. In the absence of NICD, the CBF-1 protein binds to specific DNA sequences in the regulatory elements of various target genes and represses transcription of these genes by recruiting histone deacetylases and other components to form a co-repressor complex.
In tumor types with activating mutations of Notch, blocking Notch signaling via γ-secretase inhibition produces a slower growing, less transformed phenotype in human cancer cells in vivo. Inappropriate activation of Notch signaling in T-cell acute lymphoblastic leukemia [ 135 , 136 ], breast cancer [ 137 – 139 ], melanoma [ 140 – 142 ] and lung cancer [ 143 – 145 ] has been shown to result in stimulation of proliferation, restriction of differentiation and prevention of apoptosis. Overexpression of Notch also occurs in other hematologic malignancies, including B-cell malignancies [ 128 ]. In contrast, in squamous epithelial tumors such as SCC of the oral mucosa or skin, inactivating mutations of Notch1 are more common and leave the Wnt signaling pathway unopposed, so that continuous growth ensues. In squamous epithelium, Notch1 signals the cell to undergo differentiation at the basal suprabasal junction. The development of benign skin tumors has been observed in patients taking γ-secretase inhibitors because of Notch1 inhibition.
A variety of cancers have been characterized by aberrant Notch signaling, which serves an oncogenic function [ 146 , 147 ]. This association was first described in T cell acute lymphoblastic leukemia where it was found that point mutations of the Notch receptors lead to constitutive over-activation [ 147 ]. More recently, over the past decade, several studies have emerged suggesting that dysregulated Notch activity is also involved in the inception and maintenance of other human cancers such as glioma, melanoma, breast cancer, pancreatic cancer, medulloblastoma, and colorectal carcinomas [ 131 , 148 – 150 ]..
More recently, the role of Notch as an important tumor suppressor has been illustrated in the pathogenesis of pancreatic cancer. Pancreatic cancer is a highly aggressive malignancy with a very poor prognosis. Effective treatment options are very limited largely due to the innate chemotherapy and radiotherapy resistance that characterizes this aggressive neoplasm. Interestingly, Notch signaling has been found to be important in the pathogenesis of chemo-resistance and radio-resistance of pancreatic cancer and also in the process of pancreatic carcinogenesis from initiation to cancer formation and maintenance. The study of Notch function in the pancreas, however, has been limited by early embryonic lethality of mice with Notch signaling deficiency, and thus most data exist for early pancreatic organogenesis. It has been shown that activation of Notch 1 prevented exocrine and endocrine differentiation of pancreatic progenitor cells, leaving them in an undifferentiated state [ 151 , 152 ]. Thus Notch signaling regulates cell fate decisions in both exocrine and endocrine lineages during organogenesis. The role of Notch during later embryonic stages and in adult tissue homeostasis is also being investigated. In the adult pancreas, Notch is normally suppressed except for in the centroacinar cells [ 153 ], while Notch target genes and signaling molecules are upregulated in invasive pancreatic cancer in addition to pancreatic precursor lesions from both mice and humans, suggesting that Notch might play an important role in the process of pancreatic carcinogenesis. Moreover, aberrant activation of the Notch signaling pathway has also been demonstrated in several transgenic models of pancreatic cancer [ 154 ].
Evasion of apoptosis is a hallmark of cancer [ 43 ]. During proliferation and/or growth, cancer cells encounter a variety of unfavorable conditions, such as an insufficient supply of growth factors, oxygen, and other nutrients. Under these harsh circumstances, cells generally undergo regulatory programs that induce cell cycle arrest, apoptosis, and/or other types of programmed cell death; many of these programs are modulated by the actions of various tumor suppressor genes, such as p53 and Rb. However, cancer cells can circumvent these programs by activating several pathways that promote cell survival and proliferation. Of these bypassing pathways, the insulin-like growth factor receptor (IGF-1R)-mediated signaling cascade, which is regulated by ligands, receptors, and IGF-binding proteins, plays a key role in sustained cell survival and proliferation and the evasion of apoptosis. Accordingly, a number of clinical trials directly targeting IGF-1R have been conducted in various cancer types; however, these have met with only modest or unsustained efficacy through yet to be identified mechanisms.
Recent studies have implicated IGF-1R-mediated signaling as a main player in the control of cancer cell proliferation, growth, and survival. The IGF-1R signaling axis is composed of ligands (IGF1 and IGF2), receptors (IGF-1R, IGF-2R, and IR), and IGF-binding proteins (IGFBPs) [ 155 ]. IGFs are polypeptides that are structurally similar to insulin (approximately 50% homology to insulin) [ 156 ]. IGFs are mainly produced in the liver upon stimulation of growth hormone (GH) and influence autocrine, paracrine, and endocrine systems [ 155 ]. IGF1 displays high affinity for IGF-1R and the IGF-1R/insulin receptor (IR) hybrid receptor, while having a relatively low binding capacity for IGF-2R or IR [ 155 , 157 ]. In contrast, IGF2 possesses high binding affinity for the IR-A isoform as well as IGF-1R, IGF-2R, and the IGF-1R/IR hybrid receptor [ 155 , 157 ]. IGF-1R and IGF-2R are glycoproteins located on the cell membrane. IGF-1R is a receptor tyrosine kinase that exists as a tetrameric α2β2 complex and can be associated with IR to form the IGF-1R/IR hybrid receptor [ 158 ]. In contrast, IGF-2R is a monomer with no tyrosine kinase activity and the binding of IGF2 to IGF-2R results in the termination of IGFR-mediated signaling activation. Activation of IGF-2R exerts anti-proliferative and pro-apoptotic activities [ 159 ] via a variety of mechanisms, such as binding and subsequent internalization and degradation of IGF-2 [ 158 ], surface activation of the latent TGF-β [ 160 ], or serving as a receptor for retinoic acid [ 161 ].
Binding of an IGF to its receptor induces autophosphorylation of the receptor, stimulation of intrinsic tyrosine kinase activity, and phosphorylation of cellular substrates including insulin receptor substrate 1 (IRS-1), leading to gene activation and ultimately to proliferation or differentiation of cells [ 155 ]. Two distinct signal transduction pathways for IGF-IR with major roles in transmitting the cellular effects of IGFs have been identified: the Ras/Raf/MAPK and the PI3K/Akt pathways [ 155 , 162 ]. PI3K, which is also a Ras mediator, phosphorylates the D3 position of phosphatidylinositol on PI4P and PI(4,5)P 2 to produce PI(3,4)P 2 and PI(3,4,5)P 3 [ 163 ]. This mechanism is negatively regulated by the PTEN tumor suppressor that dephosphorylates the 3′ sites of PI(3,4)P 2 and PI(3,4,5)P 3 [ 163 ]. PI(3,4,5)P 3 and PI(3,4)P 2 recruit intracellular proteins containing the pleckstrin homology (PH) domain to the cytoplasmic membrane, which is an essential event in the activation of PI3K-dependent kinases such as pyruvate dehydrogenase kinase (PDK-1) and Akt/PKB [ 164 , 165 ]. The serine/threonine protein kinase Akt is a direct target of PI3K. Three members of this family, Akt1/PKBα, Akt2/PKBβ, and Akt3/PKBγ, are activated by growth factors, integrins, and signals initiated by the stimulation of GPCR [ 165 – 168 ]. Activated Akt promotes cell survival and blocks apoptosis by phosphorylating substrates such as Bad, caspase-9, human telomerase reverse transcriptase subunit, transcription factor FKHRL1, GSK-3β, and IκB kinases [ 164 , 169 ]. Activated IGF-1R recruits the adaptor protein Shc, which, in turn, mediates the binding of growth factor receptor-bound protein 2 (Grb2) via its SH2 domain. Grb2 further recruits a guanine nucleotide exchange factor son of sevenless (Sos), which then activates Ras through converting bound GDP to GTP. Activated Ras stimulates the sequential Raf/MEK/ERK cascade, which upregulates the phosphorylation and activation of target transcription factors c-jun and ETS domain-containing protein (Elk-1), eventually leading to the promotion of cell cycle progression through modulating cyclin D1, p21, and p27 expression.
High levels of IGF-1R activation have been observed in early stage lung carcinogenesis [ 170 ] and in several sarcoma subtypes [ 171 ]. A variety of stimuli, such as platelet-derived growth factors (PDGF) and fibroblast growth factor (FGF), hormones (androgen and estrogen), and various transcription factors, such as Sp1, NF-κB, and estrogen receptor-α (ERα), have been reported to stimulate the promoter activity of the Igfr gene, resulting in increased levels of IGF-1R expression [ 172 – 175 ].
The IGF system is also regulated by six IGFBP family members that bind to IGFs in the extracellular milieu with high affinity and specificity, thus reducing the bioavailability of IGFs [ 176 , 177 ]. More than 99% of circulating IGF is bound to IGFBPs, and at least 75% of bound IGF is carried as a trimeric complex composed of IGFBP-3 and the acid labile subunit [ 177 ]. At the tissue level, IGFBPs interact either with extracellular matrix constituents (IGFBP-2 and IGFBP-5) or directly with cell membranes (IGFBP-1 and IGFBP-3), thereby regulating the interaction between IGFs and IGF-IR [ 178 ]. With the exception of IGFBP-6, which binds to IGF-2 with two times greater affinity than it does to IGF-1, the IGFBPs bind to IGF-1 with greater affinity, thereby regulating the mitogenic and anti-apoptotic activity of IGFs [ 176 , 178 , 179 ]. In addition to their modulatory role in IGF action, IGFBP-3 and IGFBP-5 have IGF-independent antiproliferative and pro-apoptotic effects in a variety of cancers [ 180 – 182 ]. Direct functional interactions between IGFBP-3 and the retinoid X receptor (RXR) have been shown to regulate transcriptional signaling and apoptosis [ 183 ]. IGF-independent antiangiogenic and antiproliferative effects of IGFBP-3 in human lung and head and neck cancer cells are also possible [ 184 , 185 ]. IGFBP-3 action is modulated by posttranslational modifications, including proteolysis, phosphorylation, and glycosylation [ 181 ]. The cleavage of IGFBPs by a variety of protease families including kallikrein-like serine proteases, cathepsins, and MMPs reduces the affinity for IGFs [ 179 ]. However, the role of these posttranslational modification and proteolytic processing events in the regulation of IGFBP stability and function appears to be virtually unexplored.
A number of tumor suppressor genes, such as p53, PTEN, breast cancer gene 1 (BRCA1), Von Hippel–Lindau (VHL), Wilms tumor 1 (WT1), and Klotho, are negative regulators of IGF-1R transcription and/or activation [ 186 – 188 ]. Studies have revealed, however, that these tumor suppressors are frequently mutated in several types of human cancers [ 189 ]. An inherited germline mutation in the Rb gene is the first identified tumor suppressor gene implicated in several types of neoplasia, including familial retinoblastoma, small-cell lung cancer, and osteosarcoma [ 7 , 189 ]. Therefore, loss or mutation of these tumor suppressor genes may contribute to evading growth-inhibitory and/or cell death signals in tumors that succeed in maintaining sustained proliferation and progressing to states of high-grade malignancy.
IGFs regulate cell growth, differentiation, and apoptosis [ 190 ]. Imbalance of these diverse processes favors uncontrolled cell proliferation, leading to malignant transformation. In addition, IGFR signaling facilitates angiogenesis and cancer cell metastasis by inducing angiogenic factors and proteases, including hypoxia-inducible factor-1α (HIF-1α) expression, which promotes the expression of vascular endothelial growth factor (VEGF) [ 191 ], interleukin-8 (IL-8) [ 192 , 193 ], MMPs [ 190 , 194 ] and uPA [ 190 ]. In addition, Akt, a downstream protein of IGF-1R-mediated signaling, enhances MDM2-mediated ubiquitination and proteosomal degradation of p53 [ 195 ]. A recent report indicates that activated IGF-1R increases the expression of oncogenic initiation of differentiation 2 (Id2) via upregulation of PI3K-Akt activity [ 196 ]. These findings indicate a possible oncogenic role of IGFR. IGFR signaling is also involved in intrinsic or acquired resistance to various conventional anticancer chemotherapies, radiation therapy, and recently developed molecularly-targeted anticancer drugs, including tyrosine kinase inhibitors (TKIs) blocking EGFR, HER2, or BRAF [ 197 – 200 ]. Increased IGF2 expression is also found in paclitaxel-resistant ovarian cancer cells [ 201 ]. Taken together, these findings implicate IGF-1R as a promising target for anticancer therapy.
Deletion of the long arm of human chromosome 13 (13q), especially the region involving 13q21, is the second most frequent chromosomal deletion revealed by comparative genomic hybridization among a large number of different types of human tumors [ 202 ]. After analyzing the genomes from hundreds of human prostate and breast cancers, the deletion at 13q21 was mapped to 142-kilobases of the smallest region of overlap, in which the KLF5 gene was the only complete gene and was thus identified as a reasonable candidate for the 13q21 tumor suppressor gene [ 203 , 204 ]. The majority of KLF5 deletions in cancers are hemizygous, i.e., one of the two KLF5 gene copies is deleted. It has been shown that KLF5 needs both copies to yield sufficient product, and deletion of one copy causes functional insufficiency – haploinsufficiency [ 205 ] – so hemizygous deletion impairs KLF5 function during tumorigenesis.
In addition to chromosomal deletion, excess degradation at the protein level has been identified as another common mechanism of KLF5 inactivation during tumorigenesis. KLF5 protein is ubiquitinated and degraded by the ubiquitin proteasome pathway [ 206 ], and the WW domain containing E3 ubiquitin protein ligase 1 (WWP1) mediates the ubiquitination of KLF5 [ 207 ]. Interestingly, the WWP1 gene is located at a chromosomal region that undergoes frequent copy number gains in human cancers, and WWP1 is indeed often amplified and overexpressed in human cancers, causing excess degradation of KLF5 protein [ 208 , 209 ]. Therefore, KLF5 is inactivated by two mechanisms: genomic deletion and excess protein degradation, indicating that KLF5 undergoes frequent functional inactivation during tumorigenesis and thus should be considered a tumor suppressor gene. Expression of KLF5 mRNA is frequently reduced or absent in prostate and breast cancer cell lines [ 203 , 204 ]. In gastric cancer, loss of KLF5 expression occurs more frequently in late stage tumors, in larger tumors, and in tumors with lymph node metastasis [ 210 ].
Consistent with a tumor suppressor function, KLF5 has also been found to inhibit cell proliferation and suppress tumorigenesis. Inhibition of cell proliferation has been shown for cancer cell lines from the esophagus, prostate, breast, and epidermis [ 204 , 211 , 212 ], as well as for non-tumorigenic epithelial cells [ 213 ]. In prostate cancer cells, KLF5 has been shown to suppress tumorigenesis in xenograft models, and the suppression was suggested to require ERβ and its association with KLF5 and the transcription coactivator CBP on the promoter of FOXO1 and subsequent activation of FOXO1, which induces anoikis in prostate cancer cells thereby suppressing tumor growth.
In contrast, KLF5 can also be tumor promoting, and the reverse of its function can be determined by posttranslational modification, specifically the acetylation of lysine 369 (K369). The oncogenic activity of KLF5 was originally suggested by in vitro studies in which KLF5 was shown to be upregulated in oncogenic H-Ras-transformed NIH3T3 cells [ 214 ], and overexpression of KLF5 promoted cell proliferation and induced the transformation of fibroblasts [ 215 ] and IEC-6 intestinal epithelial cells [ 216 ]. In the TSU-Pr1 bladder cancer cell line, expression of KLF5 promotes cell proliferation and tumorigenesis by inducing the expression of many genes [ 217 ]. The tumor promoting function of KLF5 has also been shown in breast cancer cells [ 218 ]. Knockdown of KLF5 inhibits multicellular tumor spheroid formation in vitro [ 219 ]. In transgenic mice, overexpression of KLF5 promotes the proliferation of basal epithelial cells, but does not produce tumors [ 220 ]. In the epidermis, expression of KLF5 is at relatively higher levels in keratinocytes, and overexpression of KLF5 in the basal layer of the epidermis affects epidermal development and disrupts epithelial-mesenchymal interactions necessary for skin adnexae formation [ 221 ]. KLF5 promotes cell proliferation through accelerating the G1/S and G2/M cell cycle progression and other mechanisms [ 216 , 217 ]. Regulation of cell cycle regulators by KLF5 includes the induction of cyclin D1, cyclin B1, Cdc2, Myc, EGFR etc and the inhibition of p27, p15 etc [ 217 , 222 , 223 ].
How KLF5 can be both pro- and anti-tumorigenic is unknown at present. However, a mechanism has been suggested for the reversal of KLF5 functions in gene regulation and cell proliferation control. Using a cultured epidermis epithelial cell line – HaCaT, a model widely used to dissect the TGF-β signaling pathway – it was demonstrated that KLF5 is a cofactor for TGF-β, which inhibits cell proliferation and suppresses early stage tumorigenesis. As reported in several publications [ 213 , 224 , 225 ], without TGF-β, KLF5 forms a transcriptional complex with other transcription factors to repress cell cycle inhibitors such as the p15 CDK inhibitor and induce cell cycle promoting genes such as Myc to promote cell proliferation. When TGF-β is present, KLF5 forms a different transcriptional complex with a reversed function: inducing p15 transcription but repressing Myc transcription, which results in the inhibition of cell proliferation. The molecular basis for the reversal of KLF5 function in gene regulation and cell proliferation control is TGF-β-induced acetylation of KLF5, because interruption of KLF5 acetylation by mutating its acetylation residue prevents the functional reversal of KLF5 [ 213 , 224 , 225 ]. In mouse prostate tissues, unacetylated KLF5 (unAc-KLF5) is expressed in basal or undifferentiated cells, whereas acetylated KLF5 (Ac-KLF5) is expressed primarily in luminal and/or differentiated cells [ 226 ], which is consistent with a pro-proliferative function of unAc-KLF5 and anti-proliferative function of acetylated KLF5 in cultured cells.
Based on the available information described above, Ac-KLF5 and unAc-KLF5 have opposing functions in gene regulation and cell proliferation, which could correspond to its opposing functions during tumorigenesis: Ac-KLF5 is responsible for the tumor suppressor function of KLF5 whereas unAc-KLF5 is responsible for the oncogenic function of KLF5 during tumorigenesis. It is well established that the function of TGF-β switches from that of a tumor suppressor in the early stages of tumorigenesis to a tumor promoter in late stage tumor progression [ 227 ]. How TGF-β switches function is an intriguing question, and some studies have been published to address this question. It is possible that KLF5 is essential for TGF-β’s tumor suppressor function, and interruption of TGF-β-induced KLF5 acetylation is a key to the reversal of TGF-β function during tumorigenesis. These predictions are currently under investigation.
Section 5
Carcinogenesis is a lengthy process, sometimes taking decades for normal cells to transform into invasive cancers. Because of the lengthy transformation process, with several precancerous pathologic stages preceding the change to invasive cancer, there are enormous opportunities to intervene, with the aim to reverse or slow down the transformation process [ 1 , 230 ]. Such intervention is known as cancer prevention and the use of natural or synthetic agents at pharmacological doses for cancer prevention is called chemoprevention. Chemoprevention is a cost-effective alternative to chemotherapy and its successful implementation may save millions of lives worldwide. An outstanding review article written by Haddad and Shin [ 231 ] elegantly describes the general carcinogenesis process with associated genetic and pathologic changes and the article by William et al. [ 230 ] distinguishes between chemoprevention and chemotherapy. While the purpose of chemoprevention is to eliminate or slow down the progression of intraepithelial neoplastic or precancerous lesions to invasive cancer, the purpose of chemotherapy is to stop or slow down the growth of fully transformed cells or to eliminate them through activating cell death pathways. Since anti-growth signaling via tumor suppressors challenges tumorigenesis by inhibiting the growth of damaged cells, repairing damage, or eliminating damaged cells through apoptosis or other forms of cell death mechanisms, the reactivation of these pathways using chemical compounds or genetic approaches has high prophylactic and therapeutic potential. Activation (if normal and wild-type) or reactivation (if inactivated via reversible process) of tumor suppressor genes and/or pathways might serve as crucial events for effective chemoprevention and therapy, as discussed later.
The RB-E2F pathway is one of the most important tumor suppressor pathways frequently inactivated or lost in human cancers. As described in section 3.1, Rb and p16ink4a are critical regulators of proliferation. This makes the cyclinD1/CDK4/6 complex an interesting target for chemopreventive and chemotherapeutic drug development. Green tea-derived galloyl polyphenol and epigallocatechin gallate (EGCG) were shown to decrease the phosphorylation of Rb, and as a result, cells were arrested in G1 phase [ 232 ]. Several studies also revealed that green tea polyphenols strongly inhibited CDKs or cyclin D1 to exert their chemopreventive (anti-proliferation and cell cycle arrest) effects, which might occur through decreasing the phosphorylation of Rb proteins [ 233 , 234 ]. Restoration of Rb expression by curcumin in cervical cancer cells [ 235 ] and inhibition of the Rb pathway by enhancing CDKN2A/p16 and suppressing phosphorylated Rb in glioblastoma [ 236 ] were reported and associated with the chemopreventive potential of curcumin. It has been reported that 1,25-dihydroxivitamin D, the most biologically active metabolite of the micronutrient vitamin D, exerts potent effects on the Rb signaling axis. For example, it suppresses PDGF-induced myocyte proliferation in vitro by inhibiting Rb and checkpoint kinase 1 (Chk1) phosphorylation [ 237 ]. In some tumor cells, the natural compound honokiol, derived from trees of the Magnolia genus, activated the production of reactive oxygen, leading to increased phosphorylation of Rb [ 238 ].
According to TCGA data available so far, p53 is the most frequently mutated tumor suppressor protein. However, for many tumors p53 is wild-type but inactivated via secondary mechanisms rather than by loss or mutation. Drugs are available and currently under clinical development which inhibit or remove the negative regulator MDM2, thus restoring p53 function leading to growth inhibition and induction of apoptosis. Some of these drugs are DS-3032b, RO5503781, RO5045337, SAR405838 etc. As discussed in section 3.2, viral oncogene-driven tumors also retain wild-type 53 and can be treated with DNA-damaging drugs such as cisplatin, doxorubicin, taxols etc or radiation therapy. Finally, drugs are also under development that reactivate mutant p53, for example, PRIMA-1 and APR-246.
Many natural agents exert their chemopreventive/anti-tumor effects through the induction of cell cycle arrest or apoptosis by activating the p53 pathway. Groups of investigators at Emory University and other institutions have extensively studied these molecular pathways and natural compounds. The green tea component EGCG was shown to activate p53 and its target p21 and Bax in prostate cancer cells with wild-type p53 [ 239 ], and Bax in breast carcinoma cells [ 240 ]. The vegetable-derived compound luteolin was shown to induce cell cycle arrest and apoptotic effects as well as increased chemosensitization effects associated with the activation of p53 and its targets p21, Bax, and PUMA [ 241 ]. Luteolin and a combination of luteolin and EGCG also induced mitochondrial translocation of p53 in lung cancer cell lines [ 242 ]. Another extensively investigated dietary chemopreventive agent, curcumin, was reported to activate p53 and its transcriptional target Bax in breast and bladder cancers [ 243 , 244 ] and induce mitochondrial translocation in prostate cancer [ 245 ]. Resveratrol, a component of red wine and grape skin, also activated p53 and its target genes p21, p27, Bax, PUMA, MDM2, and cyclin G [ 246 , 247 ]. Genistein, an isoflavone and dietary chemopreventive agent from soy also activated p53 and induced G2/M arrest and apoptosis in human malignant glioma cell lines through p21 induction [ 248 ]. Activation of p53 was also reported by glycyrrhizic acid in the colon of Wister rats [ 249 ], by oleanolic acid in HepG2 transplanted Balb/C mice [ 250 ], by amarogentin, a secoiridoid glycoside active component of the medicinal plant Swertia chirata , in a carbon tetrachloride (CCl 4 )/N-nitrosodiethylamine (NDEA)-induced liver carcinogenesis mouse model [ 251 ], by melatonin in cell culture models of MCF-7 and HCT116 [ 252 ] and by Kaempferol in A2780/CP70, A2780/wt, and OVCAR-3 ovarian cancer cell lines [ 253 ]. An emerging role for p73 activation by natural chemopreventive agents has also been reported. EGCG induced apoptosis by activating p73-dependent expression of a subset of p53 target genes including p21 , reprimo , cyclin G1 , PERP , MDM2 , WIG1, and P53-induced gene 11 (PIG11) in mouse embryonic fibroblasts [ 254 ]. Upregulation of p73 was reported in response to EGCG in multiple myeloma cells [ 255 ]. Polyphenol-rich Aronia melanocarpa juice induces cell cycle arrest and apoptosis by redox sensitive activation of p73 [ 256 ].
Many natural compounds also suppress carcinogenesis by activating upstream or downstream components of the p53 pathway. Curcumin downregulates expression of MDM2 at the transcriptional level in a p53-independent manner, which ultimately upregulates p21 and induces apoptosis in a prostate cancer cell line [ 257 ]. Using yeast-based assays, gene reporter assay and computational docking, Leao et al. [ 258 ] reported that natural compounds α-mangostin and gambogic acid inhibited p53-MDM2 interaction by binding with MDM2. Disruption of p53-MDM2 interaction is critical for p53 stabilization. Such interaction is inhibited by other natural compounds [ 259 , 260 ]. Herman-Antosiewicz et al. [ 261 ] reported activation of ATR/checkpoint kinase 1-dependent prometaphase checkpoint in cancer cells by the processed garlic constituent diallyl trisulfide. Vitamin D exerts its chemopreventive effects in a chemically-induced carcinogenesis mouse model by promoting expression of the DNA repair genes RAD50 and ataxia-telangiectasia mutated (ATM) and maintaining a positive feedback loop between ATM and vitamin D receptor [ 262 ]. The activation of p53 by luteolin also occurs through activation of ATM [ 242 ]. The chemopreventive agent selenium also activates DNA damage response by activating ATM [ 263 ]. Honokiol is active in cells with both wild type and mutant p53. Studies have shown that tumors with mutant p53 are particularly susceptible to honokiol, especially in the presence of oncogenic Ras. Honokiol decreases the level of Ras in the active GTP configuration [ 264 ].
Many tumor suppressor proteins are also inactivated via epigenetic silencing. Covalent modifications of histone proteins and DNA hypermethylation of promoters or CpG islands are important epigenetic silencing mechanisms through which tumor cells evade tumor suppressors, and epigenetic intervention is even possible at the precancerous stage [ 265 ]. Unlike genetic inactivation, epigenetic inactivation is reversible. DNA methyl transferases (DNMT) are key enzymes regulating DNA methylation and inhibition of such enzymes will reactivate tumor suppressors. Many natural polyphenols act as demethylating agents and reactivate tumor suppressors. In silico docking studies have revealed that curcumin may compete with the cofactor S-adenosyl methionine (SAM) for binding to the catalytic pocket of DNMT and induce global DNA hypomethylation in leukemia cells [ 266 ]. Curcumin also decreased p300, histone deacetylase (HDAC) 1 and 3 and p300 histone acetyltransferase (HAT) activity to modify chromatin acetylation [ 266 – 268 ]. Curcumin inhibited the expression of DNMT1 in vitro and in a xenograft model which subsequently reactivated the expression of p15(INK4B) tumor suppressor by promoter demethylation and induced cell cycle arrest and apoptosis [ 269 ]. In breast cancer cells, curcumin also reactivated the tumor suppressor RASSF1 through promoter demethylation by inactivating DNMT1 [ 270 ]. Human, animal and cell culture studies also revealed that green tea polyphenols are strong demethylating agents and reactivate tumor suppressor genes. Nandakumar et al. [ 271 ] reported that EGCG reactivated tumor suppressors p21 and p16INK4a by reducing DNA methylation and increasing histone acetylation. In an azoxymethane-induced APC(Min/+) mouse model of intestinal carcinogenesis, RXR-α is selectively downregulated through CpG hypermethylation, and administration of green tea as the sole source of beverage significantly increased the protein and mRNA levels of RXR-α as well as decreased CpG methylation [ 272 ]. In a cell culture model, EGCG was found to reverse the hypermethylation of p16(INK4a), retinoic acid receptor beta (RARβ), O(6)-methylguanine methyltransferase (MGMT), and human mutL homologue 1 (hMLH1) genes, leading to a subsequent increase in their mRNA and protein expression levels [ 273 ]. This demethylating activity of EGCG is associated with inhibition of DNMT1 through hydrogen bonding. Resveratrol and genistein also inhibited DNA methylation in cell culture and human intervention studies. Acetylation of STAT3 is elevated in tumors and inhibition of STAT3 by genetic mutation or by resveratrol treatment inhibited tumor growth by reactivating several tumor suppressor genes including ERα, CDKN2A, deleted in lung and esophageal cancer 1 (DLEC1) , and STAT1 [ 274 ]. In a human intervention study in women with high risk for breast cancer, administration of trans-resveratrol was associated with decreased methylation of tumor suppressor RASSF1a [ 275 ].
Loss of PTEN activates the PI3K-AKT pathway, which is currently an attractive target for drug development. So far, no PI3K inhibitor has obtained FDA approval, but several agents are in clinical trials, including BKM120, BYL719, RP6530, PF04691502, PF-05212384, MK2206 and others. Many natural compounds are also reported to inactivate the PI3K-AKT pathway either by activating PTEN or inactivating oncogenes that drive AKT activation. For example, the chemopreventive agent indole-3-carbinol (I3C), a natural indolecarbinol compound derived from the breakdown of glucobrassicin produced in cruciferous vegetables such as broccoli and Brussels sprouts, induced G1-phase cell-cycle arrest and apoptosis and inhibited the in vivo tumor growth rate by stabilization of PTEN in human melanoma cells that express wild-type PTEN, but not in cells with mutant or null PTEN genotypes [ 276 ]. Curcumin treatment significantly resulted in the inhibition of cell proliferation and an increase in the apoptosis rate through the upregulation of PTEN associated with a decrease in DNA methylation level via downregulation of DNMT3b in vivo and in vitro [ 277 ]. Many other studies also support that the PTEN-AKT pathway is a major in vitro and in vivo target of curcumin [ 278 ]. Reactivation of PTEN by resveratrol has also been reported [ 279 ].
Porphyrin molecules have been shown to inhibit YAP/TEAD activity, suggesting that the negatively-regulated targets of the Hippo pathway can be reduced [ 61 ]. Critically, the tumorous overgrowth that occurs when NF2 is conditionally disrupted in mice is inhibited with these molecules in vivo . The ligands glucagon and epinephrine enhance LATS1/2 activity, thus enhancing YAP inhibition through GPCR signaling [ 62 ]. This indicates it may be possible to enhance or potentiate the growth suppressive effects of the pathway using GPCR agonists, and that this branch of the GPCR family may be an important potential therapeutic target.
Because of its potential growth suppressive function, GDF15 may inhibit cancer progression [ 83 ]. It is possible that endogenous GDF15 mediates the bulk of the growth suppressive activities, and the secreted mature dimer may mediate disease progression. There are multiple cellular forms of GDF15, including pro-GDF15 monomer, pro-GDF15 dimer, pro-peptide N-terminal fragment, and mature dimer [ 65 ]. The N-terminal pro-peptide fragment and the mature dimer are rapidly secreted [ 65 , 83 ]. The mature dimer is believed to be the main bioactive form. However, it remains unclear whether the other forms are biologically active, or whether relative expression levels or ratios of the different forms affect the biological behavior of the cell. Further investigation is needed to establish the relative expression levels of each form in various cancer types and the functional differences between each form. These studies will be important for determining the overall suitability of GDF15 as a target in metastatic cancer.
The anti-cancer flavonoids resveratrol and genistein were shown to induce GDF15 expression in a p53-dependent manner in various types of cancer cell lines, including colorectal, osteosarcoma, and lung cancer cell lines [ 280 , 281 ]. Another anti-cancer flavonoid, apigenin, was proposed to induce GDF15 expression in a p53-independent manner [ 282 ]. Induction of GDF15 in response to anti-cancer drugs and subsequent reductions in MCF-7 breast tumor xenograft volumes correlated with increased ERK1/2 phosphorylation [ 100 ]. Thus, MEK signaling and p53 function may be critical mediators of GDF15 expression and growth suppressive function.
GDF15 has been proposed to be a predictor of all-cause mortality [ 283 – 285 ]. Therefore, serum GDF15 levels may indicate the presence of a number of different life-threatening disorders or generally poor health. GDF15 serum evaluation may have a role in general health assessment and blood panels. Routine assessment of GDF15 serum levels may also serve as a minimally invasive way of predicting cancer presence or progression.
No drugs are currently available that directly target ARID1A. However, ARID1A could interact with several pathways to exert its tumor suppression activities and drug development is underway to target such pathways. These include: 1) PI3K-AKT pathway: ARID1A mutations were also significantly associated with the presence of PIK3CA-activating mutations in tumors, suggesting that ARID1A inactivation may synergize with PIK3CA activation to facilitate cellular transformation [ 110 ]. Another study showed that PIK3CA mutations and loss of ARID1A protein expression are early events in the development of cystic ovarian clear cell adenocarcinoma [ 286 ]. Liang et al demonstrated that ARID1A siRNA knockdown in endometrial cancer cell lines increased AKT phosphorylation, implicating ARID1A as a novel regulator of PI3K pathway activity [ 287 ]. The results indicate that ARID1A and PIK3CA mutations coexist and potentially cooperate in oncogenesis. 2) P21 pathway: p21 is a potent CDK inhibitor (CKI). The p21 (CIP1/WAF1) protein binds to and inhibits the activity of cyclin-CDK2 or -CDK1 complexes, and thus functions as a regulator of cell cycle progression at G1 [ 288 ]. p21 is downregulated by ARID1A shRNAs in endometrial cancer cell lines [ 121 ]. These findings suggest that ARID1A inhibits cancer cell progression by modulating p21 expression. Since loss of ARID1A upregulates AKT phosphorylation, compounds inhibiting AKT phosphorylation, such as resveratrol could be used for tumors harboring ARID1A loss.
Notch inhibition appears to be an attractive target for compounds that might result in chemoprevention and treatment of several solid tumors that have aberrant Notch activation, such as pancreatic cancer, ALL, and brain tumors. Several Notch inhibitors have been evaluated. Since the formation of the NICD following Notch receptor cleavage by γ-secretase is a critical event in Notch signaling, γ-secretase inhibitors (GSI) are actively being investigated as Notch pathway inhibitors. In addition to preclinical studies in mice, several human clinical trials targeting different types of malignancies are currently being conducted. Notch pathways are also targets of many natural compounds. In colon cancer and melanoma cells, honokiol downregulated levels of activated Notch-1, its ligand Jagged-1, and the downstream target gene Hes-1 [ 289 , 290 ] and can be used to target Notch pathways for therapeutic and preventive purposes. Withaferin A is another natural compound that potentially targets the Notch pathway and inhibits carcinogenesis [ 291 ].
IGF-1R signaling is a typical prosurvival pathway and is closely associated with hallmarks of cancer, such as sustained activation of growth-promoting signaling and evasion of tumor suppressor-mediated cell death. Accordingly, a number of IGF-1R-targeted agents, mainly anti-IGF-1R monoclonal antibodies (mAbs) and small molecule TKIs, have been evaluated in a variety of preclinical and clinical trials [ 292 , 293 ]. Indeed, pharmacologic interventions that lead to disruption of the IGF-1R pathway have shown promising activities in inhibiting tumor development and progression as well as sensitizing anticancer therapies in preclinical models [ 294 – 296 ]. In addition, results from phase I or II clinical evaluations of IGF-1R-targeted agents, especially anti-IGF-1R mAbs, demonstrate significant clinical response [ 297 ]. However, the therapeutic benefits shown in a subset of patients enrolled in phase II or III clinical trials were unsustained and most of the patients seemed to acquire resistance to the IGF-1R-targeted therapies [ 297 – 299 ]. Furthermore, recent phase III trials of an IGF-1R mAb, figitumumab, were terminated due to an increase in serious adverse events and excess mortality in the experimental arm [ 297 ]. However, clinical trials in a number of cancer types are still in progress and the interpretation of previous and current clinical trials remains unclear [ 292 ].
Two major categories of drug resistance, de novo and acquired resistance, have been suggested to attenuate the antitumor effects of IGF-1R-targeted agents. Activation of alternative receptor- or non-receptor tyrosine kinases or downstream molecules through various mechanisms have been proposed to bypass IGF-1R signaling, accounting for de novo resistance [ 300 ]. Increased expression and/or activation of IR, EGFR, HER2, and VEGF receptor (VEGFR) have been observed in various human cancers and suggested as potential means to bypass the need for the IGF-1R pathway [ 301 – 303 ]. Recent preclinical studies using anti-IGF-1R antibodies suggest that Akt/mTOR is activated through yet to be identified mechanisms, and likely plays a vital role in the primary resistance to an anti-IGF-1R mAb cixutumumab [ 304 ]. Overexpression of IGFBPs, activation of heat shock protein 90 (Hsp90), and the EMT phenotype have been also implicated in the resistance to IGF-1R targeted therapies [ 300 ].
Given the myriad routes by which cancer cells resist IGF-1R-targeted agents, the clinical utility of IGF-1R-targeted anticancer therapies should be evaluated after the completion of extensive studies on the mechanisms underlying primary and acquired resistance to IGF-1R targeted agents, the discovery of biomarkers to predict the effectiveness of IGF-1R targeted therapies, and the development of effective combinational therapeutic regimens.
KLF5 appears to be a unique tumor suppressor in the sense that its function is context-dependent. Its tumor suppressor function could be dependent upon its acetylation, which can be induced by TGF-β and possibly other signaling pathways. Once experimentally confirmed, how TGF-β and KLF5 become oncogenic will be better understood, and some unique targets could be identified for their potential use in the detection and treatment of malignant cancer.