The Effect of Monomers Number in Peptides on Escherichia Coli Strain Productivity and Inclusion Bodies Quality

preprint OA: closed CC-BY-4.0
📄 Open PDF Full text JSON View at publisher

Abstract

Abstract This study aimed to determine the optimal cultivation conditions for four E. coli strains producing recombinant glucagon-like peptide-1 (GLP-1) tandems. Validation experiments confirmed that scale-up from shake flasks to a bioreactor is feasible without significant loss of specific productivity. We also demonstrated that the optimal cultivation conditions are identical for all tested strains. However, the number of GLP-1 monomers in the tandem influenced the final yield in both shake flasks and the bioreactor. The quality of the resulting inclusion bodies (IBs) was also evaluated. The IB content per gram of biomass was found to correlate with specific productivity, and IB quality varied among the different tandems. A correlation was identified between the titer of the GLP-1 tandems and the number of monomers. The results indicate that selecting the appropriate number of monomers during strain development can enhance productivity, improve inclusion body quality, and increase the final product titer after downstream processing.
Full text 17,767 characters · extracted from preprint-html · click to expand
The Effect of Monomers Number in Peptides on Escherichia Coli Strain Productivity and Inclusion Bodies Quality | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Research Article The Effect of Monomers Number in Peptides on Escherichia Coli Strain Productivity and Inclusion Bodies Quality Igor Kornakov, Tatiana Mukhina, Evgeniya Buslaeva, Zukhra Khasanshina, and 2 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-8455253/v1 This work is licensed under a CC BY 4.0 License Status: Posted Version 1 posted You are reading this latest preprint version Abstract This study aimed to determine the optimal cultivation conditions for four E. coli strains producing recombinant glucagon-like peptide-1 (GLP-1) tandems. Validation experiments confirmed that scale-up from shake flasks to a bioreactor is feasible without significant loss of specific productivity. We also demonstrated that the optimal cultivation conditions are identical for all tested strains. However, the number of GLP-1 monomers in the tandem influenced the final yield in both shake flasks and the bioreactor. The quality of the resulting inclusion bodies (IBs) was also evaluated. The IB content per gram of biomass was found to correlate with specific productivity, and IB quality varied among the different tandems. A correlation was identified between the titer of the GLP-1 tandems and the number of monomers. The results indicate that selecting the appropriate number of monomers during strain development can enhance productivity, improve inclusion body quality, and increase the final product titer after downstream processing. GLP-1 tandem inclusion bodies productivity E.coli Full Text Additional Declarations No competing interests reported. Supplementary Files Supplementary.docx Cite Share Download PDF Status: Posted Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-8455253","acceptedTermsAndConditions":true,"allowDirectSubmit":true,"archivedVersions":[],"articleType":"Research Article","associatedPublications":[],"authors":[{"id":574534496,"identity":"bf528a5c-edca-4270-8d36-5005410c60bd","order_by":0,"name":"Igor Kornakov","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAABFklEQVRIiWNgGAWjYBAC+QYgwdgGYrIBcQUDjIUbgGUZe2DMM0RrmQFlQqwjpIV/8bEPjBts8s3ZjyU+5p1XK2fe3nvswc892xj427sTsGqReJY8g/FBmuXOnrTDxrzbjhvLnDmXbtjz7DaDxJmzG7BrOWPMwPjgsIHBgfQ2yZnbjiXOkMgxk+A5cJvBQCIXj5YNQC3nnwO1zDlWD9Ii+QefFv4eoJYZQC030o5JfGyoSZAAapHGbwtbMkNiTxpQy7Nkgw/HDhjO4DmXJi1z4DYPLr/I9x8+zPCxzQbosDTDBwk1dfIS7L3HJN8cuC3H396LVQuDBDAgExDcw0DMA2bxYFUOAvwHULh1eBWPglEwCkbByAQAMVBjoJHrKEQAAAAASUVORK5CYII=","orcid":"","institution":"Pharm-Holding (R\u0026D Geropharm)","correspondingAuthor":true,"prefix":"","firstName":"Igor","middleName":"","lastName":"Kornakov","suffix":""},{"id":574534497,"identity":"d04a0bcf-b297-4070-b259-11d336f8032b","order_by":1,"name":"Tatiana Mukhina","email":"","orcid":"","institution":"Pharm-Holding (R\u0026D Geropharm)","correspondingAuthor":false,"prefix":"","firstName":"Tatiana","middleName":"","lastName":"Mukhina","suffix":""},{"id":574534498,"identity":"f0c9b3a2-9d42-4db6-be4b-c59a347747d7","order_by":2,"name":"Evgeniya Buslaeva","email":"","orcid":"","institution":"Pharm-Holding (R\u0026D Geropharm)","correspondingAuthor":false,"prefix":"","firstName":"Evgeniya","middleName":"","lastName":"Buslaeva","suffix":""},{"id":574534500,"identity":"77caf658-93a6-4184-ab17-2ef8532b5276","order_by":3,"name":"Zukhra Khasanshina","email":"","orcid":"","institution":"ITMO University","correspondingAuthor":false,"prefix":"","firstName":"Zukhra","middleName":"","lastName":"Khasanshina","suffix":""},{"id":574534504,"identity":"653a1989-bb0e-424b-ac58-da50bebf979c","order_by":4,"name":"Maria Bochkareva","email":"","orcid":"","institution":"Pharm-Holding (R\u0026D Geropharm)","correspondingAuthor":false,"prefix":"","firstName":"Maria","middleName":"","lastName":"Bochkareva","suffix":""},{"id":574534506,"identity":"eba6b8cd-a33e-4f17-a60f-b2eb7930298b","order_by":5,"name":"Roman Drai","email":"","orcid":"","institution":"Pharm-Holding (R\u0026D Geropharm)","correspondingAuthor":false,"prefix":"","firstName":"Roman","middleName":"","lastName":"Drai","suffix":""}],"badges":[],"createdAt":"2025-12-26 12:23:34","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-8455253/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-8455253/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":100432266,"identity":"8bdb1275-7ca9-4e81-afbf-494c015b8307","added_by":"auto","created_at":"2026-01-16 15:03:02","extension":"docx","order_by":0,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":1461784,"visible":true,"origin":"","legend":"","description":"","filename":"THEEFFECTOFMONOMERSNUMBERINPEPTIDESONE.COLISTRAIN.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/491bcd36a6242b8943ca8cd8.docx"},{"id":100547213,"identity":"a728dfa6-fa40-406b-8b8e-15bb1795e039","added_by":"auto","created_at":"2026-01-19 08:14:53","extension":"jpg","order_by":1,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":45668,"visible":true,"origin":"","legend":"","description":"","filename":"Figure1.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/0f260d67b72048690eaef35f.jpg"},{"id":100546502,"identity":"7f480913-ecab-4c7a-950c-9505509bdb12","added_by":"auto","created_at":"2026-01-19 08:09:59","extension":"jpg","order_by":2,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":88578,"visible":true,"origin":"","legend":"","description":"","filename":"Figure2.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/8a9ec7d7674a8244f11d6048.jpg"},{"id":100432256,"identity":"f6457bd4-a1e7-4e10-b39c-91017dee7b70","added_by":"auto","created_at":"2026-01-16 15:03:02","extension":"docx","order_by":3,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":15096,"visible":true,"origin":"","legend":"","description":"","filename":"Table1.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/0dc1c28652234e3a94a2e309.docx"},{"id":100547060,"identity":"a418913e-9d75-48d9-a23e-cc4fab51fee0","added_by":"auto","created_at":"2026-01-19 08:14:13","extension":"jpg","order_by":4,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":74084,"visible":true,"origin":"","legend":"","description":"","filename":"Figure3.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/fde2e9884bdb3695f9db1f05.jpg"},{"id":100546786,"identity":"ca22d2db-2f35-4f95-a5c2-15c54a35de4d","added_by":"auto","created_at":"2026-01-19 08:12:35","extension":"jpg","order_by":5,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":141047,"visible":true,"origin":"","legend":"","description":"","filename":"Table1.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/33fd0be6852b4a3d05bdf049.jpg"},{"id":100546655,"identity":"8769f710-d337-4c29-bde2-f97267c35ff3","added_by":"auto","created_at":"2026-01-19 08:11:41","extension":"jpg","order_by":6,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":83920,"visible":true,"origin":"","legend":"","description":"","filename":"Figure4.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/d6fd2931dd396085b58ea3d1.jpg"},{"id":100546693,"identity":"4ea03382-1ea2-4f60-8363-50153e1a6886","added_by":"auto","created_at":"2026-01-19 08:11:56","extension":"docx","order_by":7,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":14739,"visible":true,"origin":"","legend":"","description":"","filename":"Table2.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/d14e7a2d50f267ce71db7a30.docx"},{"id":100546894,"identity":"a3958d74-a787-4c25-b3ae-b20bc75c55ba","added_by":"auto","created_at":"2026-01-19 08:13:07","extension":"jpg","order_by":8,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":90949,"visible":true,"origin":"","legend":"","description":"","filename":"Figure5.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/eafcc378aa0d076061811688.jpg"},{"id":100547056,"identity":"d6ae0691-1a6c-4923-9bce-e68e284814e5","added_by":"auto","created_at":"2026-01-19 08:14:13","extension":"jpg","order_by":9,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":46665,"visible":true,"origin":"","legend":"","description":"","filename":"Table2.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/19e27ada23cf90e8f22cd6c6.jpg"},{"id":100546707,"identity":"d39c2f62-22aa-4cb8-ad52-1e0222255a63","added_by":"auto","created_at":"2026-01-19 08:12:00","extension":"jpg","order_by":10,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":69105,"visible":true,"origin":"","legend":"","description":"","filename":"Figure6.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/2f1ff3ffad004a47b38ad8d0.jpg"},{"id":100546713,"identity":"b027a6c3-d824-45cc-ac18-4a5e78e1edef","added_by":"auto","created_at":"2026-01-19 08:12:01","extension":"docx","order_by":11,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":15436,"visible":true,"origin":"","legend":"","description":"","filename":"Table3.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/5adb7770bbfcf42a7430ea03.docx"},{"id":100432259,"identity":"97c2f444-cb31-4b5b-b7b3-1839e9563b1a","added_by":"auto","created_at":"2026-01-16 15:03:02","extension":"jpg","order_by":12,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":31308,"visible":true,"origin":"","legend":"","description":"","filename":"Figure7.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/04ea3f291dd0a29f4e1b4a32.jpg"},{"id":100546826,"identity":"a65a9514-30ad-42cd-8d7e-6883b98a54df","added_by":"auto","created_at":"2026-01-19 08:12:52","extension":"jpg","order_by":13,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":84642,"visible":true,"origin":"","legend":"","description":"","filename":"Table3.jpg","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/399308a6e87a54f9f2c2b7c0.jpg"},{"id":100546517,"identity":"f9bc7d6c-610e-4423-a985-4c81fdb68bb1","added_by":"auto","created_at":"2026-01-19 08:10:07","extension":"json","order_by":14,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":6864,"visible":true,"origin":"","legend":"","description":"","filename":"b73d83957b3144dca07a23b76cca5a66.json","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/fa808264dc680cd737b2c8ce.json"},{"id":100432273,"identity":"4db63fac-b02e-4b9f-b01b-b8af480b3b00","added_by":"auto","created_at":"2026-01-16 15:03:03","extension":"docx","order_by":15,"title":"","display":"","copyAsset":false,"role":"acdc-reference","size":809162,"visible":true,"origin":"","legend":"","description":"","filename":"Supplementary.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/6397c1c776e4bd54558d8912.docx"},{"id":100554266,"identity":"91aeb643-0d6d-496c-bb19-88351e980b78","added_by":"auto","created_at":"2026-01-19 08:38:38","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":888199,"visible":true,"origin":"","legend":"","description":"","filename":"THEEFFECTOFMONOMERSNUMBERINPEPTIDESONE.COLISTRAIN.pdf","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1_covered_b4386ebb-dfa8-4e3a-baac-e564c762ea8a.pdf"},{"id":100432274,"identity":"cd430aab-9880-44b2-bf6c-815148f60597","added_by":"auto","created_at":"2026-01-16 15:03:03","extension":"docx","order_by":6,"title":"","display":"","copyAsset":false,"role":"supplement","size":809162,"visible":true,"origin":"","legend":"","description":"","filename":"Supplementary.docx","url":"https://assets-eu.researchsquare.com/files/rs-8455253/v1/f4a49c4645ebcb2f61507f74.docx"}],"financialInterests":"No competing interests reported.","formattedTitle":"\u003cp\u003eThe Effect of Monomers Number in Peptides on Escherichia Coli Strain Productivity and Inclusion Bodies Quality\u003c/p\u003e","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":true,"highlight":"","institution":"","isAcceptedByJournal":false,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true},"keywords":"GLP-1, tandem, inclusion bodies, productivity, E.coli","lastPublishedDoi":"10.21203/rs.3.rs-8455253/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-8455253/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"This study aimed to determine the optimal cultivation conditions for four E. coli strains producing recombinant glucagon-like peptide-1 (GLP-1) tandems. Validation experiments confirmed that scale-up from shake flasks to a bioreactor is feasible without significant loss of specific productivity. We also demonstrated that the optimal cultivation conditions are identical for all tested strains. However, the number of GLP-1 monomers in the tandem influenced the final yield in both shake flasks and the bioreactor. The quality of the resulting inclusion bodies (IBs) was also evaluated. The IB content per gram of biomass was found to correlate with specific productivity, and IB quality varied among the different tandems.\nA correlation was identified between the titer of the GLP-1 tandems and the number of monomers. The results indicate that selecting the appropriate number of monomers during strain development can enhance productivity, improve inclusion body quality, and increase the final product titer after downstream processing.","manuscriptTitle":"The Effect of Monomers Number in Peptides on Escherichia Coli Strain Productivity and Inclusion Bodies Quality","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2026-01-16 15:02:57","doi":"10.21203/rs.3.rs-8455253/v1","editorialEvents":[{"type":"communityComments","content":0}],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"researchsquare","isNatureJournal":false,"hasQc":true,"allowDirectSubmit":true,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"/submission","title":"Research Square","twitterHandle":"researchsquare","acdcEnabled":true,"dfaEnabled":false,"editorialSystem":"","reportingPortfolio":"","inReviewEnabled":false,"inReviewRevisionsEnabled":true}}],"origin":"","ownerIdentity":"81d51c44-e4f4-4912-9f7c-e74ea51b71f9","owner":[],"postedDate":"January 16th, 2026","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"posted","subjectAreas":[],"tags":[],"updatedAt":"2026-04-20T07:08:35+00:00","versionOfRecord":[],"versionCreatedAt":"2026-01-16 15:02:57","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-8455253","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-8455253","identity":"rs-8455253","version":["v1"]},"buildId":"XKTyCvWXoU3ODBz1xrDgd","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2026) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00
unpaywall
last seen: 2026-05-30T02:00:01.510937+00:00
License: CC-BY-4.0