Real-time Characterisation and modulation of microbe-induced inflammation and resolution, using a novel zebrafish larval corneal injury and infection model

preprint OA: gold CC-BY-4.0
📄 Open PDF Full text JSON View at publisher
AI-generated deep summary by claude@2026-07, 2026-07-03 · read from full text

The preprint studied microbial keratitis by developing a zebrafish larval corneal injury and infection model using transgenic lines with fluorescently labeled neutrophils, macrophages, and basal epithelial cells, enabling real-time imaging of immune responses. In this model, sterile corneal injury triggered rapid immune cell recruitment that was amplified by exposure to pro-inflammatory mediators fMLF and leukotriene B4, while infection with live bacteria produced robust, sustained recruitment with increased neutrophil speed and migratory distance. The key limitation explicitly acknowledged by the authors is that the work is presented as a preprint and has not been peer reviewed. Relevance to endometriosis: the paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

Read from the paper's body, not the abstract. Not a substitute for reading the paper. No clinical advice. How this works

Abstract

Abstract Microbial keratitis (MK) is a major global cause of blindness. Yet, treatment is still heavily dependent on antimicrobials with limited options for immunomodulators - despite the critical role of dysregulated immune responses in disease pathogenesis. This gap reflects a critical unmet clinical need and is compounded by the lack of model systems capable of real-time high-resolution immune dynamics analysis. To address this, we developed a zebrafish larvae MK model utilising transgenic zebrafish lines with fluorescently labelled neutrophils, macrophages and basal epithelial cells. Corneal injury triggered rapid immune cell recruitment which was amplified by exposure to pro-inflammatory mediators such as N-formylmethionine-leucyl-phenylalanine (fMLF) and leukotriene B4 (LTB4). Infection with live bacteria induced robust, sustained neutrophil and macrophage recruitment, marked by increased neutrophil speed and migratory distance. This model enables dynamic in-vivo visualization of immune cell dynamics, offering a powerful and scalable platform to accelerate the discovery and screening of novel immunomodulators for MK.
Full text 16,759 characters · extracted from preprint-html · click to expand
Real-time Characterisation and modulation of microbe-induced inflammation and resolution, using a novel zebrafish larval corneal injury and infection model | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Real-time Characterisation and modulation of microbe-induced inflammation and resolution, using a novel zebrafish larval corneal injury and infection model Kelvin Cheng, Carl Tucker, Justyna Cholewa-Waclaw, Stephen Mitchell, and 3 more This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-7524577/v1 This work is licensed under a CC BY 4.0 License Status: Under Review Version 1 posted You are reading this latest preprint version Abstract Microbial keratitis (MK) is a major global cause of blindness. Yet, treatment is still heavily dependent on antimicrobials with limited options for immunomodulators - despite the critical role of dysregulated immune responses in disease pathogenesis. This gap reflects a critical unmet clinical need and is compounded by the lack of model systems capable of real-time high-resolution immune dynamics analysis. To address this, we developed a zebrafish larvae MK model utilising transgenic zebrafish lines with fluorescently labelled neutrophils, macrophages and basal epithelial cells. Corneal injury triggered rapid immune cell recruitment which was amplified by exposure to pro-inflammatory mediators such as N-formylmethionine-leucyl-phenylalanine (fMLF) and leukotriene B4 (LTB4). Infection with live bacteria induced robust, sustained neutrophil and macrophage recruitment, marked by increased neutrophil speed and migratory distance. This model enables dynamic in-vivo visualization of immune cell dynamics, offering a powerful and scalable platform to accelerate the discovery and screening of novel immunomodulators for MK. Health sciences/Medical research/Experimental models of disease Biological sciences/Immunology/Infection Health sciences/Medical research/Preclinical research Biological sciences/Immunology/Innate immunity Biological sciences/Immunology/Inflammation Full Text Additional Declarations There is NO Competing Interest. Supplementary Files SuppFigure1.pdf Scanning electron microscopy images of injured zebrafish larvae corneas. SuppFigure2.pdf Validation of zebrafish larvae corneal injury model. SuppFigure3.pdf Indices of motility of neutrophils and macrophages in sterile injury with or without infection with P. aeruginosa. SuppVideo1.avi Widefield timelapse of a Tg(K19:GFP; LysC:mTurquoise) zebrafish larvae post-injury demonstrating rapid wound closure followed by accumulation of neutrophils within the cornea. SuppVideo2.avi Maximum intensity projection timelapse of a Tg(K19:GFP, LysC:mTurquoise; mfap4:tdTomato-CAAX) zebrafish larvae post-injury demonstrating rapid wound closure, followed by accumulation of neutrophils an SuppVideo3.mp4 Representative timelapse of injured corneas at 1 h-post injury with or without infection. SuppVideo4.mp4 Three-dimensional reconstruction of injured and cornea of 3 day-post-fertilisation larvae infected with P. aeruginosa at 1 h post-infection demonstrating distribution of P. aeruginosa in relation to i Cite Share Download PDF Status: Under Review Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-7524577","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":536171733,"identity":"972ba90f-8c25-445e-a7a5-6e868b53c691","order_by":0,"name":"Kelvin Cheng","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAAvElEQVRIiWNgGAWjYBACCQYeEGXDwHAAzE8gWksa6VoOk6BFsv3swccFv87L8R1gfviBsS2NsBZpnrxk45l9t40lD7AZSzC25RDWIifBYybN23M7ccMBBjMGxrYKorSY/+btOVe/4QD7N+K0SANtYeb5cSDB4AAPyBYiHCbZk2MszduQbDjzME+xRMI5IrwvcfyM4WeeP3byfMfbN374UJZMWAsYMLYBCWYGomIFBv4Qr3QUjIJRMApGIAAANrY1IdgZKW0AAAAASUVORK5CYII=","orcid":"https://orcid.org/0000-0001-5618-082X","institution":"University of Edinburgh","correspondingAuthor":true,"prefix":"","firstName":"Kelvin","middleName":"","lastName":"Cheng","suffix":""},{"id":536171734,"identity":"0a139f4c-2c1e-4840-bdb0-fd5af6e4cf7c","order_by":1,"name":"Carl Tucker","email":"","orcid":"","institution":"University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Carl","middleName":"","lastName":"Tucker","suffix":""},{"id":536171735,"identity":"07dd85a8-d5f2-4b93-8e9b-6af9f963ec96","order_by":2,"name":"Justyna Cholewa-Waclaw","email":"","orcid":"","institution":"High Content Screening Facility, University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Justyna","middleName":"","lastName":"Cholewa-Waclaw","suffix":""},{"id":536171736,"identity":"4bf1ec30-a5ca-41e3-a705-175bcd5cf521","order_by":3,"name":"Stephen Mitchell","email":"","orcid":"","institution":"Kings Buildings, University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Stephen","middleName":"","lastName":"Mitchell","suffix":""},{"id":536171737,"identity":"adeaf5e7-6f36-4aa4-b036-0ecdbcdef645","order_by":4,"name":"Fraser Laidlaw","email":"","orcid":"","institution":"Kings Buildings, University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Fraser","middleName":"","lastName":"Laidlaw","suffix":""},{"id":536171738,"identity":"fa19c527-1785-48f5-9ef8-b0ef99ee377a","order_by":5,"name":"Bethany Mills","email":"","orcid":"https://orcid.org/0000-0003-3209-9490","institution":"The University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Bethany","middleName":"","lastName":"Mills","suffix":""},{"id":536171739,"identity":"fce23d5c-a379-42a6-9d1e-181583142080","order_by":6,"name":"Adriano G Rossi","email":"","orcid":"","institution":"The University of Edinburgh","correspondingAuthor":false,"prefix":"","firstName":"Adriano","middleName":"G","lastName":"Rossi","suffix":""}],"badges":[],"createdAt":"2025-09-03 08:26:15","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-7524577/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-7524577/v1","draftVersion":[],"editorialEvents":[],"editorialNote":"","failedWorkflow":false,"files":[{"id":97145141,"identity":"2c8137c6-d3ed-407f-946f-19f1ffaebf92","added_by":"auto","created_at":"2025-12-01 10:13:10","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":4207098,"visible":true,"origin":"","legend":"Article File","description":"","filename":"ZebrafishMethodsPaper.pdf","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1_covered_ccd45497-0d2c-48ff-9182-1a5b00f2fd3b.pdf"},{"id":97113895,"identity":"97b1bcea-61f4-4ad6-a3db-960b1330e932","added_by":"auto","created_at":"2025-12-01 06:55:53","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"supplement","size":2182359,"visible":true,"origin":"","legend":"Scanning electron microscopy images of injured zebrafish larvae corneas.","description":"","filename":"SuppFigure1.pdf","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/5df0b21815471658580d711a.pdf"},{"id":97113897,"identity":"ff285bc1-dd40-4b36-ab7b-be2c7e7d5707","added_by":"auto","created_at":"2025-12-01 06:55:53","extension":"pdf","order_by":2,"title":"","display":"","copyAsset":false,"role":"supplement","size":145567,"visible":true,"origin":"","legend":"\u003cp\u003eValidation of zebrafish larvae corneal injury model.\u003c/p\u003e","description":"","filename":"SuppFigure2.pdf","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/032e8c93c14b973f034ff30f.pdf"},{"id":97142794,"identity":"20219f5c-5877-4bc3-8bf6-1c1ebf1d05ff","added_by":"auto","created_at":"2025-12-01 10:07:57","extension":"pdf","order_by":3,"title":"","display":"","copyAsset":false,"role":"supplement","size":139421,"visible":true,"origin":"","legend":"\u003cp\u003eIndices of motility of neutrophils and macrophages in sterile injury with or without infection with P. aeruginosa.\u003c/p\u003e","description":"","filename":"SuppFigure3.pdf","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/fe92514b64fd33433d451cf0.pdf"},{"id":97113898,"identity":"e5a7db20-e512-4079-8a6c-d898bbde254f","added_by":"auto","created_at":"2025-12-01 06:55:54","extension":"avi","order_by":4,"title":"","display":"","copyAsset":false,"role":"supplement","size":3934216,"visible":true,"origin":"","legend":"Widefield timelapse of a Tg(K19:GFP; LysC:mTurquoise) zebrafish larvae post-injury demonstrating rapid wound closure followed by accumulation of neutrophils within the cornea.","description":"","filename":"SuppVideo1.avi","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/cc891498ab6c9b2a7f72388c.avi"},{"id":97113899,"identity":"159079e0-89f8-419e-a13d-c7a54fa4cb63","added_by":"auto","created_at":"2025-12-01 06:55:54","extension":"avi","order_by":5,"title":"","display":"","copyAsset":false,"role":"supplement","size":4852944,"visible":true,"origin":"","legend":"\u003cp\u003eMaximum intensity projection timelapse of a Tg(K19:GFP, LysC:mTurquoise; mfap4:tdTomato-CAAX) zebrafish larvae post-injury demonstrating rapid wound closure, followed by accumulation of neutrophils an\u003c/p\u003e","description":"","filename":"SuppVideo2.avi","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/29a94c72bfb3f2139cc696bf.avi"},{"id":97113900,"identity":"fb9bdede-b2e6-4cf9-9b5a-20bc7a093d5a","added_by":"auto","created_at":"2025-12-01 06:55:54","extension":"mp4","order_by":6,"title":"","display":"","copyAsset":false,"role":"supplement","size":52999829,"visible":true,"origin":"","legend":"Representative timelapse of injured corneas at 1 h-post injury with or without infection.","description":"","filename":"SuppVideo3.mp4","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/4cb34a7dede5724e5329ecb0.mp4"},{"id":97113901,"identity":"f79d21db-7541-469b-bac8-058e09167cac","added_by":"auto","created_at":"2025-12-01 06:55:56","extension":"mp4","order_by":7,"title":"","display":"","copyAsset":false,"role":"supplement","size":160343209,"visible":true,"origin":"","legend":"Three-dimensional reconstruction of injured and cornea of 3 day-post-fertilisation larvae infected with P. aeruginosa at 1 h post-infection demonstrating distribution of P. aeruginosa in relation to i","description":"","filename":"SuppVideo4.mp4","url":"https://assets-eu.researchsquare.com/files/rs-7524577/v1/826a11136e95e4d8594bad07.mp4"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Real-time Characterisation and modulation of microbe-induced inflammation and resolution, using a novel zebrafish larval corneal injury and infection model","fulltext":[],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":false,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":true,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"","lastPublishedDoi":"10.21203/rs.3.rs-7524577/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-7524577/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"Microbial keratitis (MK) is a major global cause of blindness. Yet, treatment is still heavily dependent on antimicrobials with limited options for immunomodulators - despite the critical role of dysregulated immune responses in disease pathogenesis. This gap reflects a critical unmet clinical need and is compounded by the lack of model systems capable of real-time high-resolution immune dynamics analysis. To address this, we developed a zebrafish larvae MK model utilising transgenic zebrafish lines with fluorescently labelled neutrophils, macrophages and basal epithelial cells. Corneal injury triggered rapid immune cell recruitment which was amplified by exposure to pro-inflammatory mediators such as N-formylmethionine-leucyl-phenylalanine (fMLF) and leukotriene B4 (LTB4). Infection with live bacteria induced robust, sustained neutrophil and macrophage recruitment, marked by increased neutrophil speed and migratory distance. This model enables dynamic in-vivo visualization of immune cell dynamics, offering a powerful and scalable platform to accelerate the discovery and screening of novel immunomodulators for MK.","manuscriptTitle":"Real-time Characterisation and modulation of microbe-induced inflammation and resolution, using a novel zebrafish larval corneal injury and infection model","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2025-12-01 06:55:49","doi":"10.21203/rs.3.rs-7524577/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"communications-biology","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"commsbio","sideBox":"Learn more about [Communications Biology](http://www.nature.com/commsbio/)","snPcode":"","submissionUrl":"","title":"Communications Biology","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Communications Series","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"71f00a46-bba7-4720-8919-cd8e3b42bb67","owner":[],"postedDate":"December 1st, 2025","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"under-review","subjectAreas":[{"id":57004014,"name":"Health sciences/Medical research/Experimental models of disease"},{"id":57004015,"name":"Biological sciences/Immunology/Infection"},{"id":57004016,"name":"Health sciences/Medical research/Preclinical research"},{"id":57004017,"name":"Biological sciences/Immunology/Innate immunity"},{"id":57004018,"name":"Biological sciences/Immunology/Inflammation"}],"tags":[],"updatedAt":"2025-12-01T06:55:49+00:00","versionOfRecord":[],"versionCreatedAt":"2025-12-01 06:55:49","video":"","vorDoi":"","vorDoiUrl":"","workflowStages":[]},"version":"v1","identity":"rs-7524577","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-7524577","identity":"rs-7524577","version":["v1"]},"buildId":"8U1c8b4HqxoKbykW_rLl7","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. This is a recent paper (2025) — citers typically take a year or two to land, and the OpenAlex reference graph may still be filling in.

Source provenance

europepmc
last seen: 2026-05-20T01:45:00.602351+00:00
unpaywall
last seen: 2026-05-21T05:10:58.409756+00:00
License: CC-BY-4.0