Results
in stepwise ~25 nm increases in length at forces around 150-170 pN, where every step corresponds to a 164
single I91 unfolding event ( Figure 2E,F )29. Since our single-molecule experiments rely on non-specific 165
physisorption of proteins to the AFM cantilever, we find a variable number of 25-nm events in individual recordings 166
(seven and six in the examples in Figure 2E,F, respectively). Notably, many steps with shorter lengths are evident 167
in single-molecule recordings obtained with the MG-treated (I91 )8 sample (Figure 2G, short steps marked by red 168
stars), suggesting that many unfolding domains contain covalent bonds that prevent full mechanical extension of 169
the polypeptide, as previously observed for disulfide and isopeptide bonds45,46. 170
To quantify the extent of MG-der ived crosslinking modifications in an unbiased manner, we selected single-171
molecule recordings following increasingly stringent fingerprin ting criteria44. Initially, using a lax criterion, we 172
extracted the step size and unfolding force of all events in traces containing ≥2 events with at least one being 25 nm 173
in length, and represented the results in bidimensional histogr ams. For pristine (I91) 8, this analysis identifies the 174
expected main population of events centered at 25 nm that emerges from a background of non-specific events typical 175
of single-protein AFS measurements44 (Figure 2H, 25 nm population shaded in blue). Similar results are obtaine d 176
with control (I91) 8 incubated in the absence of MG ( Figure 2I ). In contrast, the abundance of ~25 nm events 177
considerably drops in the sample treated with MG, where a new population of events between 9-14 nm is now 178
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7
observed (Figure 2J; population of short steps shaded in light red). For precise estimation of the proportion of these 179
shorter steps, we followed a stricter fingerprint criterion ana lyzing only traces that contain 9-14 nm and/or 23-27 180
nm steps (Figure 2K-M). We find that 77% of events in the MG-treated (I91) 8 sample correspond to short steps, 181
strongly suggesting that most I91 domains in these conditions contain MG-induced covalent crosslinking 182
modifications. By setting incubations with MG of different dura tion, we find that the proportion of short steps 183
reaches saturation after 48 h of reaction ( Figures 2N, S4). Importantly, these experiments also reveal that the sole 184
addition of MG induces intradomain crosslinks in 24% of I91 dom ains despite its immediate removal by SEC, a 185
process that is completed in less than 1 h at 4ºC (open circle in Figure 2N). This result indicates that MG quickly 186
induces a subset of covalent crosslinking modifications in the I91 domain of titin. 187
Overall, our single-molecule experiments with MG-treated (I91) 8 indicate that intradomain covalent crosslinking 188
modifications are very prevalent and can target the majority of I91 domains despite expected chemical competition 189
with non-crosslinking modifications. 190
Detection of crosslinking modification MOLD in MG-treated I91 191
We sought to characterize the chemical nature of the crosslinking AGEs formed in MG-treated I91. With that aim, 192
we first produced glycated and control (I91) 1 preparations ( Figures 3A, S5, Text S1 ). Similar to (I91) 8, the 193
molecular mass of (I91)1 determined by MALDI-TOF/TOF increases upon 24 h incubation wit h 50 mM MG, and 194
the peak corresponding to glycated (I91) 1 is broader than that of the pristine protein ( Figure S6). This indicates 195
equivalent extent and heterogeneity of glycation in (I91)1 and (I91)8. Next, we collected the 15N,1H-TOCSY-HSQC 196
NMR spectra of 13C,15N-(I91)1 samples. While the projection of the H-H planes in the spectrum for non-glycated 197
(I91)1 displays well-defined cross-peaks at 7.2 ppm correlating lysine-H with the other intra-residue protons, these 198
signals disappear in MG-treated (I91)1, which proves that MG modifies the NH group of the lysine side chains of 199
(I91)1 (Figure 3A,B). 200
201
To investigate the chemical nature of the AGEs formed in glycat ed I91, we incubated unlabeled (I91) 1 with 13C-202
labeled MG. The advantage of this strategy is that only carbons coming from MG become NMR-visible, thus 203
allowing straightforward comparison with commercially available chemical standards of AGEs. The 1H,13C-HMBC 204
spectra of unlabeled (I91)1 modified with 13C-MG evidence the correlation of some aromatic (i.e. between 6 and 9 205
ppm in the 1H dimension) one bond C-H cross-peaks with other C-H cross-peak s. This demonstrates that MG 206
induces the formation of aromatic AGEs on I91 (Figure 3C) . To assess whether these si gnals could arise from 207
MOLD, we collected the 1H,13C-HMBC spectrum of MOLD standard (sMOLD) and carried out its ch emical shift 208
assignment (Table S1). The 1H,13C-HMBC signals obtained for sMOLD match those observed for glyc ated (I91)1 209
(Figure 3C), unequivocally demonstrating the formation of MOLD on MG-treated I91. Subtle shifts in the 1H,13C-210
cross-peaks of MOLD formed on I91 compared to sMOLD are likely due to the different chemical environments. 211
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8
In addition, the low intensity peaks appearing next to the C5-H 2, C5-H4 and C2-H4 cross-peaks suggest that 13C-212
MG-treated (I91) 1 might contain at least two different MOLD moieties with differ ent protein chemical 213
environments. 214
215
In combination, our NMR data confirm that modification of I91 l ysines by MG is substantial and identify MOLD 216
as a crosslinking AGE present in the modified protein. 217
218
Restricted conformational flexibility and preserved fold of glycated I91 219
Our interpretation of the AFS data assumes that glycated I91 remains folded in the absence of force application. To 220
obtain independent validation of this assumption, we further used NMR spectroscopy to get insights at the residue 221
level on potential structural effects in glycated I91. We obser ve that the positions of the structural fingerprint 15N-222
HSQC amide cross-peaks in (I91) 1 do not change upon incubation with MG ( Figure 3D), a first indication that 223
glycation does not induce major alterations to the structure of I91. Furthermore, we do not detect any relevant 224
change in the ring shifted resonance 1H signal of L58- CH3, which arises from its structural proximity to the 225
aromatic side chain of W34 in the hydrophobic core of the domai n (Figure S7A,B), nor in the long-range NOE 226
signals that result from ter tiary structural contacts (Figure S7C ). Using the backbone chemical shifts (i.e. N, H N, 227
Cα, C, Hα and CO) assigned for all residues in 13C,15N-(I91)1 incubated in the presence or absence of MG (BMRB 228
codes 53390 and 53389, respectively), we also observe that glycation does not affect the β-sheet propensity scores 229
of the β-sheets of the domain ( Figure S7D-F). Altogether, these data prove that glycation mediated by MG d oes 230
not impact the secondary nor the tertiary structure of I91. 231
Despite preserving the global fold of the I91 domain, MG-treated samples show increased intensity of many HSQC 232
peaks (Figure 3E). This suggests that glycation shifts I91 towards a predominan t conformation, thereby reducing 233
exchange between minor conformational populations. The most aff ected residues are those mainly located at the 234
ABED β-sheet, as well as in the loops connecting these strands and in those connecting them with the A’GFC β-235
sheet (Figure S8A). Intriguingly, the HSQC peaks that mostly change their intens ities upon glycation are located 236
at the N-terminus of strand D and at the C-terminus of strand E , which could indicate modification of nearby C47 237
and C63 (Figure S8A). However, the chemical shifts of the C β of C47 and C63 (highly sensitive to the oxidation 238
state of the thiol group) did not remarkably change upon glycation (27.3 ppm for C47 and 28.1 ppm for C63, Figure 239
S8B). This observation aligns with previous results, which show that both cysteine residues in I91 have low solvent 240
accessibility when the domain is folded, and therefore cannot b e targeted by reagents in the solution at 37°C 29 241
(Figure S8C). 242
To evaluate the effect of glycation on the dynamics of I91, we acquired NMR relaxation data (i.e. R1, R2 and 15N 243
HET-NOE; Figure S9) and determined the amplitudes of the conformational fluctuations of the backbone amide 244
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9
groups in terms of order parameters (O2, on the ps to ns time scale) according to a model-free formalism47. O2 values 245
were calculated considering that the best-fit rotational diffusion tensor is anisotropic with a correlation time (c) of 246
10.6 and 11.5 ns for untreated and MG-treated (I91) 1, respectively (Figure 3F ). The mean values (±SEM) of the 247
backbone order parameters calculated for the L1-L89 stretch ( Text S1) are 0.701±0.011 for I91incubated in 248
the absence of MG and 0.768±0.013 for MG-treated I91 (p<0.0001 for paired samples t-test), suggesting that 249
glycation restricts overall protein conformational dynamics and rigidifies the domain. This result is even clearer 250
from the comparison of O2 (i.e. ΔO2= O2I91 glycated - O2I91) at the residue level ( Figure 3G,H). Remarkably, not all 251
regions showing increased O2 are located near MG-sensitive lysine residues, which indicates that glycation can 252
reduce structural fluctuations in an allosteric manner. Finally, the restricted conformational flexibility of glycated 253
I91 was also captured by a reduced conformational entropy of th e protein backbone (i.e. ΔSconf=-114.2±2.9 Jꞏmol-254
1ꞏK-1 or TΔSconf=-34±0.8 kJꞏmol-1 at 298 K; error is SD), as calculated from NMR relaxation data48. 255
256
In short, structural characterization of glycated I91 proves that MG does not induce any major change to the fold of 257
the protein. However, we detect reduced conformational flexibility of several regions of the glycated domain, which 258
probably results from the formation of crosslinking AGEs captured in single-molecule force-spectroscopy and NMR 259
experiments. 260
261
Mechanically relevant glycated lysines in I91 262
Our results so far indicate that MG-induced glycation of I91 le ads to the formation of intradomain lysine-lysine 263
crosslinking AGEs in the absence o f major structural alteration s. To directly examine the extent of this type of 264
AGEs, we did additional AFS experiments using MG-treated (I91)8, but now including a protein preparation where 265
we aimed to transform the lysine residues into inert CEL 49 ( Figures 4A,B, S10 ) . W e s t e r n b l o t ( W B ) a n a l y s i s 266
confirms that our experimental protocol results in high levels of CEL, which are considerably higher than in I91 267
incubated only with MG (Figure 4C ). AFS results show that control samples not subjected to CEL m odification 268
but incubated with MG display the expected increase in short unfolding steps after MG incubation (Figure 4D,E). 269
However, the appearance of short unfolding steps upon MG incubation is notably reduced in the case of the CEL-270
modified (I91) 8 preparation ( Figure 4D-F ). Hence, this set of experiments confirm that lysine-lysine co valent 271
crosslinking AGEs are responsible for the reduced mechanical unfolding length of glycated I91 domains. 272
Next, we investigated the specific lysine pairs that are preferential crosslinking sites in MG-treated I91. We first 273
analyzed the step sizes and associated forces resulting from me chanical unfolding of glycated I91. By fitting the 274
worm-like chain model of polymer elasticity 50 to the force versus step size distribution, we determined that the 275
reduction in contour length of the I91 domain containing crosslinking AGEs is ~16 nm (i.e. around 40 amino acids 276
trapped by the covalent crosslink considering a contour length of 0.4 nm per amino acid 51) (Figure 4G ). We 277
identified three candidate pairs of structurally vicinal lysine residues in the sequence of I91 that could account for 278
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10
this reduction in contour length, i.e. K6-K55, K35-K79 and K37- K85 (Figure 4H). To prove that MG-induced 279
crosslinking involves at least one of these lysine pairs, we produced the mutant polyprotein (I91-KA)8, in which we 280
replaced K6, K37 and K79 with non-reactive alanine residues in all I91 domains. Upon 72 h incubation of (I91-281
KA)8 at 37ºC with 50 mM MG and subsequent purification (Figure S11), we conducted unfolding experiments by 282
AFS. Different from the wild-typ e protein, the population of 9- 13 nm steps in MG-treated (I91-KA) 8 i s o n l y 283
marginally increased with respect to the mutant protein incubated in the absence of MG ( Figure 4I,J ). In 284
combination, our results with (I91-KA)8 confirm that at least one of the selected lysine pairs is a primary target for 285
MG-induced crosslinking in I91. I n agreement with this result, following an MS-based search for crosslinked 286
peptides between lysine pairs in (I91)1 incubated with 50 mM MG for 24 h at 37°C, we were able to unambiguously 287
detect the presence of a MOLD-crosslinked dipeptide involving K35 and K79 (Figure 5). 288
289
Interdomain crosslinking AGEs targeting titin domains 290
In addition to intradomain crosslinking of lysine residues, int erdomain and intermolecular crosslinking reactions 291
should also be possible when MG reacts with serially linked protein domains such as those in (I91)8 (Figure S12A). 292
While our preparations are devoid of high-molecular weight intermolecular crosslinks thanks to the size-exclusion 293
purification step ( Figure S3B ), we cannot rule out contributions of intramolecular, interdom ain crosslinks that 294
would reduce the number of mechanically unfoldable domains in A FS experiments ( Figure S12B). Indeed, we 295
detect a slight decrease in unfolding events per AFS trace, from an average of ~5 in controls to ~4 in glycated (I91)8 296
(Figure S12C ), suggesting that MG incubation induces some interdomain cross linking. Considering that 297
interdomain crosslinks would also cause structural modifications on the (I91)8 protein, we studied the impact of MG 298
treatment on the overall structure and size of (I91)8 by small-angle X-ray scattering (SAXS). The scattering signals 299
for both glycated and non-glycated (I91)8 overlap to a great extent, suggesting that the influence of glycation on the 300
overall structure of (I91) 8 is minor ( Figure S12D). In addition, neither Porod-Debye plot shows a Porod plateau 301
(Figure S12E), proving that neither protein preparation displays compact gl obular structures and that both have a 302
certain degree of flexibility. This observation agrees with the plateau observed in the q3ꞏI(q) vs. q3 plots (Figure 303
S12F) which is typical of flexible partially folded structures 52. Moreover, both SAXS-derived pair-distance 304
distribution functions ( Pr; probability distribution of the interatomic vectors inside t he molecule) exhibit a local 305
maximum at ~20Å, which accounts for the inter-atomic distances within a single I91 domain, and another one at 306
~46 Å, which indicates the separation between the mass centers of two consecutive I91 domains ( Figure S12G). 307
This separation agrees with the average length of the I91 domai n (Figure 3A), thus indicating extended domain 308
organizations. 309
310
In summary, AFS and SAXS data taken together point to limited extent of interdomain crosslinking in MG-treated 311
(I91)8 in our experimental conditions. 312
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11
313
Crosslinking glycation products in full-length titin 314
Since MG-induced glycation results in the formation of crosslinking AGEs in I91, we hypothesized that other titin 315
domains could also be target of these modifications. To test th is possibility, we examined by AFS and HaloTag 316
technology53 the consequences of MG-induced glycation of native cardiac tit in isolated from mice. In these 317
experiments, we covalently attached engineered titin molecules containing a HaloTag inserted in the distal I-band 318
region of the protein to glass surfaces coated with HaloTag ligand (Figure 6A). Next, we added 50 mM MG to the 319
fluid chamber of the AFS and started pulling from titin molecules in constant-velocity mode for several hours. We 320
also ran experiments in the absence of MG. Two representative force-distance traces are shown in Figure 6A; both 321
of them exhibit a characteristic sawtooth pattern, a well-known single-molecule fingerprint in constant-velocity 322
force spectroscopy where every peak originates from the mechani cal unfolding of a titin domain and the distance 323
between peaks reflects the increase in contour length associated with unfolding54. Using the worm like chain model, 324
we find that the commonest change in contour length between con secutive peaks in the absence of MG is ~30 nm 325
(Figure 6B), as expected for non-modified titin domains53. In agreement with previous reports, we also detect a less 326
frequent population of unfolding transitions (less than 20% of total events) characterized by changes in contour 327
length shorter than 20 nm (Figure B )42,53. Interestingly, the distribution of unfolding events shifts to wards shorter 328
changes in contour length when titin is incubated with MG (Figure 6A,B), indicating that many domains in titin in 329
addition to I91 undergo MG-induced crosslinking. 330
331
Mechanical properties of glycated titin domains 332
Although intramolecular crosslinks are generally considered to stiffen proteins due to the associated reduction in 333
total contour length, this effect can be countered or even reve rsed depending on how they affect the mechanical 334
(un)folding dynamics of the targeted domains; for instance if c rosslinks result in mechanical destabilization that 335
favors unfolded polypeptides43. Hence, to quantify in detail how crosslinking AGEs affect the global mechanical 336
properties of titin domains, as well as the contribution of non -crosslinking AGEs, we further exploited our single-337
molecule force-ramp experiments. 338
339
First, we determined whether AGEs alter the mechanical stability of the I91 domain. We find that domains 340
containing MG-derived crosslinking AGEs unfold at a slightly lo wer force than counterparts incubated in the 341
absence of MG (142 and 158 pN, respectively; Figure 6C ). Similarly, CEL-containing I91 domains appear 342
mechanically weaker than the corresponding controls (114 vs 122 pN, respectively; Figure 6D). Fitting the Bell-343
Evans model of force-activated reactions55, we estimate that unfolding rates at zero force are between 3 and 8 fold 344
higher for glycated domains, while the distance to the transition state is mostly preserved indicating no major 345
changes in the force dependency of unfolding (Table S2). In combination, our analyses of unfolding forces indicate 346
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12
that both crosslinking and non-crosslinking AGEs induce mechani cal weakening of the targeted domains, a 347
softening effect that in the case of crosslinking modifications opposes stiffening that results from reduced total 348
contour length. 349
350
Next, we did unfolding-quench-probe AFS experiments to study mechanical folding of glycated I91 (Figure 6E)29. 351
In these experiments, (I91) 8 is subjected to an unfolding force-ramp, followed by a quench pulse to 0 pN where 352
domains first collapse and subsequently regain native mechanical stability in a time-dependent manner. In the final 353
probe pulse, domains that refolded during the quench pulse unfo ld again. Folding fractions are calculated as the 354
ratio between the number of unfolding events observed in the probe pulse and those observed in the unfolding pulse. 355
To have better resolution of folding fractions at low folding t imes, we included force pulses to 40 pN before and 356
after the quench at 0 pN. Since 40 pN is non-permissive for fol ding of the I91 domain 41, the initial pulse allows 357
better synchronization of actual folding times limiting the eff ects of variable collapse ti mes. Similarly, jumping 358
straight to 40 pN avoids folding reactions occurring during the probe force ramp. Results of the unfolding-quench-359
probe AFS experiments indicate that CEL moieties do not noticeably modify the folding kinetics of the I91 domain 360
(Figure 6F). In contrast, I91 domains containing crosslinking AGEs refold at a rate ≥30 s-1, which is the resolution 361
limit of our setup implying at least a 6-fold increase compared to the corresponding control (Figure 6G). Hence, in 362
addition to stiffening resulting from reduced total contour length, crosslinking AGEs entail an additional stiffening 363
effect as a consequence of increased folding of targeted domains. 364
Prevailing stiffening induced by titin glycation 365
As explained in the previous section, our single-molecule data demonstrate that, similar to oxidative modifications, 366
glycation of titin can entail both stiffening and softening effects29,42. To illustrate the available range of modulation 367
of titin mechanics by AGEs, we did Monte Carlo computer simulations as reported 43. We first built virtual models 368
of the I-band of human titin containing 104 (for the N2BA isoform) or 48 (for the N2B isoform) Ig domains, all of 369
them with equivalent mechanical properties, as well as random c oil N2Bus and PEVK regions ( Table S3). Since 370
the PEVK region is rich in lysine residues ( Figure 6H,I ), we also estimated the reduction in contour length 371
associated with crosslinking modifications targeting this region of titin. Specifically, considering that the first and 372
last lysine in each of the 31 PEVK repetitions can form a crosslink (Figure 6I), we used a 67% maximum reduction 373
in contour length upon glycation of the PEVK region (Figure 6J ). We acknowledge that crosslinks between 374
different PEVK repetitions could result in further decreases in contour length; however, we have not contemplated 375
this possibility here. 376
In the simulations, we subjected the virtual I-bands to 1-Hz tr iangular force pulses between 0 pN and a predefined 377
setpoint peak force while monitoring the resulting changes in t itin length ( Figure 6K,L ). During these 378
extension/relaxation cycles, titin domains unfold and refold stochastically according to their folding and unfolding 379
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13
rates, which depend on the type of glycation modification as de tected in our single-molecule experiments (Tables 380
S4, S5). At t = 0 s, all domains are folded and, as the simulations p rogress, a fraction of domains transitions to the 381
unfolded state resulting in longer protein lengths (Figure 6L). Simulation times were long enough to always reach 382
steady-state lengths in all simulation runs (Figures 6M, S13). 383
In Figure 6M, we present the results of the simulations of N2BA titin at a peak force of 10 pN, typically considered 384
the upper limit of the physiological range 40, comparing control conditions with two extreme scenarios where all 385
domains are glycated with either non-crosslinking or crosslinking AGEs. These results readily capture the prevailing 386
stiffening effect of crosslinking modifications, which cause ~33% shortening of titin at peak force. In contrast, non-387
crosslinking modifications result in subtle, yet measurable, softening. Prompted by these results, we ran additional 388
simulations at intermediate degrees of glycation and considerin g different proportions of non-crosslinking and 389
crosslinking AGEs. In Figure 6N, we compare steady-state lengths of titin in these simulations with respect to 390
control simulations. As expected, we find that the mechanical effects of both types of AGEs progressively increase 391
at higher glycation fractions. More importantly, we observe tha t stiffening contributions of crosslinking AGEs 392
outweigh softening induced by non-crosslinking counterparts even when the ratio of crosslinking/non-crosslinking 393
modifications is only 20/80, independently of the total levels of glycation (Figure 6N). We observe similar effects 394
for the N2B isoform, although in this case stiffening is less apparent ( Figure S13 A,B). Increasing the peak force 395
of our simulations to 100 pN exacerbates the mechanical consequences of both crosslinking and non-crosslinking 396
modifications, with up to 57% reduction in length induced by crosslinking AGEs (Figure S13C-F). Further analysis 397
of the Monte Carlo simulations captures a fundamental role of g lycation of the PEVK domains in global titin 398
stiffening (Figure S14). Indeed, if we consider that no glycation targets the PEVK re gion, no stiffening of titin is 399
detected at 10 pN peak force indicating no overall mechanical effect of crosslinking AGEs targeting Ig domains at 400
this force (Figure S14A,C). At 100 pN in the absence of PEVK glycation, the stiffening contribution of crosslinking 401
AGEs in Ig domains becomes apparent again (Figure S14B,D). Such force dependency of the stiffening effects of 402
crosslinking AGEs in titin Ig domains resembles the behavior reported for intradomain disulfide bonds43. 403
Finally, we also quantified from our Monte Carlo simulations how glycation affects Ig domain unfolding/refolding 404
dynamics, which can influence downstream force-dependent interactions and PTMs11,15 and active force generation 405
by sarcomeres41. With this aim, we counted the number of unfolding events in t he different simulations. Results 406
indicate that both crosslinking and non-crosslinking AGEs increase the extent of Ig domain (un)folding transitions, 407
particularly at low forces (Figure S15). 408
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85 Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., . . . Kay, L. E. Backbone 1117
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coli Ribonuclease H in Solution. Journal of the American Chemical Society 121, 10119-10125, (1999). 1128
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34
1148
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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35
Figure 1. Glycation stiffens cardiomyocytes. (A) Hypothesis of this work: protein glycation contributes to 1149
cardiomyocyte stiffening in situation of glycative stress inclu ding diabetes. (B) Schematic representation of a 1150
contracted and relaxed I-band in half a sarcomere (not to scale). Titin is colored in yellow, while other sarcomeric 1151
proteins appear in gray. Titin Ig and fibronectin domains are r epresented as filled circles, and the approximate 1152
positions of the mostly unstructur ed N2Bus and PEVK segments ar e indicated. The length of the mechanically 1153
active I-band and the beginning of the A-band are delimited by arrows. Please note that in the relaxed sarcomere, 1154
unstructured regions are extended, and a fraction of Ig domains is unfolded. (C) Difference in spectral counts 1155
(#Spectral counts) of peptides containing glycated residues alon g the titin sequence (x-axis) resulting from the 1156
hearts of 5 control and 5 ob/ob mice (2 chromatographic runs per sample). (D) Difference in spectral counts of 1157
peptides containing glycated residues between diabetic myocardi um samples (n=2) and control myocardium 1158
samples (n=2). In C and D, the pink area indicates values above and below 3 x SD of control datasets where no 1159
differences in glycated peptides are expected (Figure S1). (E) Representation of AFM nanoindentation experiments 1160
to characterize the effects of incubation with MG on transverse stiffness of skinned neonatal cardiomyocytes. (F) 1161
Representative approach force-distance AFM curves recorded for untreated (-MG, black) and MG-treated (+MG, 1162
red) cardiomyocytes. (G) Quantification of Young’s moduli obtained by AFM nanoindentation. Each dot represents 1163
the median Young’s modulus obtained for an individual cell, results obtained with n = 13 for -MG condition and n 1164
= 11 for +MG condition, error bars represent SD. (H) Stretch protocol used to measure the passive force of 1165
cardiomyocytes in the longitudinal direction. A single skinned cardiomyocyte is mounted between a force sensor 1166
and a motor (inset). The cell is stretched from 1.0 to 1.3 times its initial length (L0) in 6 steps, and the passive force 1167
is recorded before and after 30-minute incubation with phosphoc reatine-free relaxing buffer including or not MG 1168
at RT. Force traces show average results from n = 8 cells per c ondition; individual force traces were normalized 1169
considering the peak force values at 1.3 L 0 before the incubation phase. (I) Changes in passive force measured at 1170
1.3 initial length (L 0) before and after incubation with and without MG. (J) Relative changes in passive stiffness 1171
after incubation with and without MG. Error bars represent SEM (n = 8). p-value <0.01(**), <0.001 (***). 1172
1173
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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36
1174
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for thisthis version posted February 14, 2026. ; https://doi.org/10.64898/2026.02.13.705744doi: bioRxiv preprint
37
Figure 2. MG induces a high proportion of crosslinking modifica tions in the I91 domain of titin. (A) 1175
Representation of the reaction between I91 and MG leading to the formation of non-crosslinking (e.g. CEL; depicted 1176
in blue) and crosslinking (e.g. MOLD; depicted in red) AGEs in lysine residues. (B) Experimental groups to study 1177
the effects of glycation of the (I91) 8 polyprotein. Non-modified lysine residues are represented in o ne-letter code; 1178
modifications indicated as in (A). (C) Size-exclusion chromatograms of (I91) 8 protein preparations. Arrow marks 1179
elution volume of (I91)8. (D) MALDI-TOF/TOF spectra of pristine or glycated (I91)8 after incubation with 50 mM 1180
MG for 72 h at 37°C. (E-G) Representative single-molecule force-ramp traces to probe the m echanical unfolding 1181
of individual titin I91 domains in the three types of (I91) 8 preparations. Blue stars mark 23-27 nm events coming 1182
from unfolding of full length I91 domains. Red stars indicate s horter events (9-14 nm). (H-J) Bidimensional 1183
histograms showing frequency of events according to their size and force at which they occur for the three 1184
experimental conditions, using lax fingerprinting to select sin gle-molecule events. The number of events 1185
contributing to the data set are indicated. Monodimensional distributions of step sizes are shown on top of the 1186
bidimensional histograms. (K-M) Equivalent histograms to panels H-J obtained using strict fingerprinting to select 1187
single-molecule events. (N) Kinetics of appearance of 9-14 nm steps. The solid line is a f it to first order reaction 1188
kinetics. For the 0 h incubation time, the data for pristine pr otein was considered for the fit. The open symbol 1189
corresponds to the results from the sample to which MG was adde d and then immediately removed using FPLC. 1190
Error bars are SD of bootstrapping distributions75. PDF: probability density function. 1191
1192
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38
1193
Figure 3. Characterization of glycation-induced modifications i n titin’s I91 domain by NMR. (A) Ribbon 1194
representation of the solution structure of I91 (PDB: 1TIT). The side chains of lysine residues are shown in purple. 1195
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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The double arrow indicates the distance between the ends of the globular structure. (B) Overlapping of the 1196
projections of the different H-H planes of the 1H,1H-TOCSY-HSQC spectra obtained for native (black) and glycated 1197
(I91)1 (red). The chemical shifts of the H -H cross-peaks corresponding to lysine residues are marked with a blue 1198
line that crosses the correlation peaks appearing due to coupling between the H with the other protons of the lysine 1199
side chains. The insert in the spectra shows a model representi ng the side chain of lysine. (C) Overlapping of the 1200
1H,13C-HMBC spectrum obtained for sMOLD (blue) and that obtained for (I91)1 treated with 13C-MG (red). As it 1201
happens in 1H,13C-HMBC spectra, all the peaks corresponding to the C-H one bond correlation are split into two 1202
different signals separated by their 1JC-H coupling constants. The chemical structure of MOLD is shown. (D) Overlay 1203
of the ¹⁵N-HSQC spectra for non-glycated (I91) 1 (black) and glycated (I91) 1 (red). (E) Effect of glycation on the 1204
intensity of the HSQC peaks, calculated as (I glycated/Inative)-1, where Inative is the resonance intensity of each peak of 1205
I91 (I’native) internally corrected by the intensity of the N-H cross peak corresponding to the side chain of N77 (see 1206
panel D) (Inative=I’native/IN77(N-H)), and Iglycated is also the corrected resonance intensity of each peak in glycated (I91)1. 1207
The bars corresponding to lysine residues are colored in green. (F) Backbone O2 values obtained from NMR 1208
relaxation data for non-glycated (I91) 1 (black) and glycated (I91) 1 (red). Gray shaded areas indicate the positions 1209
of lysine residues. Position of -strands following previously assigned annotations81 is shown as blue arrows at the 1210
top of the panel. (G) Differences between order parameters for residues in non-glyca ted (I91)1 and glycated (I91)1 1211
(ΔO2= O2I91 glycated - O2I91). The bars corresponding to lysine residues are colored in gre en. ( H ) C a r t o o n 1212
representations of the 3D structure of I91, which have been color-coded according to the ΔO2 values plotted in panel 1213
G (blue for ΔO2 > 0.3, cyan for 0.2 < ΔO2 ≤ 0.3, red for 0.1 < ΔO2 ≤ 0.2, salmon for 0.05 < ΔO2 ≤ 0.1, and yellow 1214
for 0.02 < ΔO2 ≤ 0.05. The image presents two views of the same structure, rotated 180º. Labels for the β-sheets are 1215
shown in blue. Images were generated with Pymol88. 1216
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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40
1217
Figure 4. Lysines in I91 are mechanically relevant glycation targets. (A) Schematic representation of a lysine 1218
residue reacting with pyruvic acid in the presence of NaBH3CN to form CEL. (B) Experimental workflow to block 1219
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41
lysines by formation of CEL (routes 3 and 4), which prevents su bsequent MG glycation in route 4. Control 1220
incubations of the (I91) 8 are also indicated (routes 1 and 2). (C) SDS-PAGE analysis of (I91) 8 domains that have 1221
undergone the reactions shown in (B). Panel shows Coomassie blue staining (left) and WB analysis using anti-CEL 1222
antibodies (right). (D) Bidimensional histograms showing the frequency of the size of the unfolding steps and the 1223
force at which they occur in AFS traces selected with stringent fingerprinting for the four experimental conditions. 1224
The number of events contributing to the data set are indicated . Monodimensional distributions of step sizes are 1225
shown on top of the bidimensional histograms. (E-F) Quantification of the percentage of unfolding steps between 1226
9 and 14 nm in the two experimental arms. (G) Distribution of force versus step size for events obtained using MG-1227
incubated (I91)8 in AFS experiments. Solid lines are worm-like chain fits to the data. The contour length reduction 1228
in short steps is estimated to correspond to a covalent barrier trapping around 40 amino acids. (H) Structure of the 1229
I91 domain (PDB: 1TIT) highlighting lysine residues mutated out in (I91-KA)8. Image was generated with Pymol88. 1230
(I-J) (I91-KA)8 was incubated in the absence or presence of 50 mM MG for 72 h a t 37ºC and probed using single-1231
molecule AFS. Single-molecule traces were selected with the non-stringent fingerprinting criterion, and data are 1232
represented as in panels D and E. WT data from Figure 2. Error bars are SD of bootstrapping distributions75. PDF: 1233
probability density function. 1234
1235
1236
1237
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for thisthis version posted February 14, 2026. ; https://doi.org/10.64898/2026.02.13.705744doi: bioRxiv preprint
42
1238
Figure 5: Identification of a MOLD crosslink in glycated I91 by LC-MS/MS. (A) Schematic representation of 1239
the experimental workflow. (B) Zoomed-in integrated survey scan between minutes 36 and 37, showing the doubly-1240
charged precursor ion at m/z 698.38 corresponding to a chymotry ptic dipeptide from I91 crosslinked by a MOLD 1241
connector. (C) Sequence of the chymotryptic dipeptide; the connector and lys ines 35 and 79 are highlighted in 1242
green. (D) Assigned fragmentation MS/MS spectrum corresponding to the pe ptide in (C), taking the long peptide 1243
sequence (QAANTKSAANL) as a base on which the short sequence pl us the crosslinking agent (MOLD-KL) are 1244
added. The figure shows the main fragmentation series (b and y) for the fragments singly- (+) or doubly-charged 1245
(++), containing (asterisks) or not the MOLD-KL delta-mass, demonstrating the exact location of crosslinking. The 1246
y´1 and b´1 ions would correspond to the breaking of the peptid e bond between the residues of the short sequence 1247
(KL), giving rise to the common fragment derived from leucine (y1 / y´1) and the fragment corresponding to the 1248
rest of the crosslinked structure (b´1). Black arrows indicate neutral losses of water or ammonium. Blue arrows 1249
mark the a-series ions derived from the neutral loss of the car bonyl group from the corresponding b-series ions, 1250
demonstrating the correct assignment of these ions. 1251
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preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for thisthis version posted February 14, 2026. ; https://doi.org/10.64898/2026.02.13.705744doi: bioRxiv preprint
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1255
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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44
Figure 6. Mechanics of glycated titin. (A) Native titin molecules containing a HaloTag insertion at the end of the 1256
I-band region are immobilized on a HaloTag-ligand derivatized glass surface and stretched using AFM in constant-1257
velocity mode. Glycation is induced in situ by adding 50 mM MG. Representative curves are shown. (B) Cumulative 1258
distribution of changes in contour length (ΔLc). (C) Distribution of unfolding forces of I91 domains after 72 h 1259
incubation of (I91)8 at 37ºC in the absence (top; n = 440 events from 3 independent experiments) and in the presence 1260
of 50 mM MG ( bottom; n = 436 9-14 nm events from 2 independent experiments). (D) Distribution of unfolding 1261
forces for (I91)8 incubated for 48 h at 50 ºC without (top; n = 323 from 4 independent experiments) or with (bottom; 1262
n = 418 from 4 independent experiments) pyruvic acid and NaBH 3CN. Solid lines in panels E and F are fits to the 1263
Bell-Evans model of force-activated reactions 55,74. (E) Representative unfolding-quench-probe AFS trace to study 1264
mechanical folding of glycated I91. A single glycated (I91) 8 polyprotein is subjected to 40 pN s -1 unfolding pulse, 1265
then force is quenched to 0 pN and finally increased again in a probe pulse. The folding fraction is calculated by 1266
comparing the number of unfolded domains in both ramps. In this example, 5 out of 5 9-14 nm steps and 2 out of 3 1267
23-27 nm steps refolded during the force quench. 40 pN force pulses are included for optimal sensitivity (see main 1268
text). (F,G) Folding fractions corresponding to the same protein preparation s a s i n ( C , D ) . L i n e s r e p r e s e n t 1269
exponential fits to the data. In all cases, n>60 for each time point. (H) Schematic representation of the PEVK region 1270
in N2BA titin, highlighting the position of lysine residues in the sequence of human N2BA titin (Uniprot: Q8WZ42). 1271
(I) Alignment of the 31 PEVK repeats of human N2BA titin (repeats a ccording to Uniprot: Q8WZ42). The most 1272
terminal lysine residues in each repeat are highlighted in red, while the remaining lysine residues are marked in 1273
pink. All other amino acids are shown in gray. (J) Distribution of contour length reduction in all PEVK repeats 1274
when their first and last lysine residues are crosslinked by MOLD. (K) Force protocol for Monte Carlo simulations. 1275
(L) Corresponding protein length of a virtual N2BA titin subjected to to the force protocol in (K). (M) Length of 1276
N2BA titin at 10 pN during the Monte Carlo simulations for non-modified (black), 100% glycated/0% crosslinked 1277
(blue) and 100% glycated/100% crosslinked (red) protein. Solid lines are the average of 10 independent simulations. 1278
Shaded areas represent SD. (N) Heatmap representing N2BA titin length at 10 pN peak force for Monte Carlo 1279
simulations at different glycation conditions, relative to the non-modified protein. Results are the average of 10 1280
independent simulations per condition. The simulations in panels M and N consider that the PEVK region can be 1281
glycated. Error bars are SD of bootstrapping distributions75. PDF: probability density function. 1282
1283
preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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