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by claude@2026-07, 2026-07-03
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The paper investigates how observation scale affects relationships among soil microbial communities (bacterial, archaeal, and fungal taxa richness and density) and organic matter properties (carbon and nitrogen content, stoichiometric and isotopic ratios) plus soil water content, comparing millimetre-sized aggregates to bulk homogenised soil cores across two soil layers. Using pairwise correlation analyses, it finds that organic matter properties correlate more strongly in bulk soil, while correlations between microbial community metrics and organic matter properties are weaker in bulk samples than in aggregates, particularly in topsoil. It also reports systematic differences between aggregates and bulk samples for several individual microbial and organic matter properties in topsoil. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.
Abstract
Relationships among variables in ecological systems are inherently scale-dependent, especially in heterogeneous systems. Yet it remains to be examined whether relationships among variables vary across observation scales in soil. Generally, it is desirable that observation scale matches the intrinsic scale of a process or pattern. Millimetre-sized soil aggregates are closer to the intrinsic scale of microbial communities than traditionally studied bulk soil samples, making them more suitable for studying potential links between microbial communities and their environment. To explore the effect of observation scale on relationships among soil parameters, we measured bacterial, archaeal, and fungal taxa richness and density, organic matter properties (e.g., carbon and nitrogen content, stoichiometric and isotopic ratios), and soil water content in individual aggregates and aliquots of homogenised soil cores, bulk soil samples, in two soil layers. We analysed pairwise correlations among these variables and assessed whether individual aggregates systematically differed from bulk soil samples. Organic matter properties were more strongly correlated in bulk soil samples, consistent with the idea that increasing the sample volume reduces noise. In contrast, microbial community and organic matter properties showed weaker correlations in bulk soil samples than aggregates in topsoil. In addition, we found that aggregates and bulk soil samples differed systematically in individual microbial and organic matter properties, particularly in the topsoil. Our study demonstrates that relationships among variables in soil are spatial scale-dependent. Aggregates offer valuable insights into microbial communities in soil, complementing bulk soil samples, and are useful for studying links between microbial communities and their environment.
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Abstract
Relationships among variables in ecological systems are inherently scale-dependent, especially in heterogeneous systems. Yet it remains to be examined whether relationships among variables vary across observation scales in soil. Generally, it is desirable that observation scale matches the intrinsic scale of a process or pattern. Millimetre-sized soil aggregates are closer to the intrinsic scale of microbial communities than traditionally studied bulk soil samples, making them more suitable for studying potential links between microbial communities and their environment.
To explore the effect of observation scale on relationships among soil parameters, we measured bacterial, archaeal, and fungal taxa richness and density, organic matter properties (e.g., carbon and nitrogen content, stoichiometric and isotopic ratios), and soil water content in individual aggregates and aliquots of homogenised soil cores, bulk soil samples, in two soil layers. We analysed pairwise correlations among these variables and assessed whether individual aggregates systematically differed from bulk soil samples.
Organic matter properties were more strongly correlated in bulk soil samples, consistent with the idea that increasing the sample volume reduces noise. In contrast, microbial community and organic matter properties showed weaker correlations in bulk soil samples than aggregates in topsoil. In addition, we found that aggregates and bulk soil samples differed systematically in individual microbial and organic matter properties, particularly in the topsoil.
Our study demonstrates that relationships among variables in soil are spatial scale-dependent. Aggregates offer valuable insights into microbial communities in soil, complementing bulk soil samples, and are useful for studying links between microbial communities and their environment.
Competing Interest Statement
The authors have declared no competing interest.
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