Reference
to strain UU1008 to yield
390 bp . nt 1118
Software and Algorithms
Ltd , South Africa using Sanger
sequencing technology on an ABI
Genetic Analyser 3500XL ( Thermo
Fisher Scientific® , UK) .
Thermo Fisher
Scientific®
Suggestion: (Thermo Fisher
Scientific, RRID:SCR_008452)(
link)
MEGA XMEGA X software was employed
to align sequences using ClustalW
and to draw the phylogenetic tree
using the maximum composite
likelihood model while employing
1000 bootstrap replications to test the
confidence of the tree. ClustalW
Suggestion: (ClustalW,
RRID:SCR_017277)( link)
SciScore is an automated tool that is designed to assist expert reviewers by finding and presenting
formulaic information scattered throughout a paper in a standard, easy to digest format. SciScore is
not a substitute for expert review. SciScore also checks for the presence and correctness of several
unique identifiers, including RRIDs (research resource identifiers) in the manuscript, detects sentences
that appear to be missing RRIDs, and can even suggest RRIDs under certain circumstances. All RRID
suggestions should be verified; only the author can know whether the suggestions are correct.
For a full description of scored criteria and tips for improving your score, please see https://
www.scicrunch.com/sciscorereport-faq
Materials
Design Analysis Reporting (MDAR) Checklist for Authors
The MDAR framework establishes a minimum set of requirements in transparent reporting applicable to studies
in the life sciences (see Statement of Task: doi:10.31222/osf.oio/9sm4x.). The MDAR checklist is a tool for
authors, editors and others seeking to adopt the MDAR framework for transparent reporting in manuscripts
and other outputs. Please refer to the MDAR Elaboration Document for additional context for the MDAR
framework.
Report provided by SciScore | August 12, 2023 | Based on DocumentID 2281_64d790b6422720.49447682
Materials
Antibodies Yes (indicate where provided: page no/section/legend) n/a
For commercial reagents, provide supplier name,
catalogue number and RRID, if available
No antibodes detected.
Please add identifiers for all resources where possible
Cell Materials Yes (indicate where provided: page no/section/legend) n/a
Cell lines: Provide species information, strain.
Provide accession number in repository OR supplier
name, catalog number, clone number, OR RRID
No cell lines detected
Please add identifiers for all resources where possible
Primary cultures: Provide species, strain, sex of
origin, genetic modification status.
Not currently checked by SciScore
Experimental Animals Yes (indicate where provided: page no/section/legend) n/a
Laboratory animals: Provide species, strain, sex,
age, genetic modification status. Provide accession
number in repository OR supplier name, catalog
number, clone number, OR RRID
Yes, 1 organism detected, 0 RRID provided
: nt 1118
Please add identifiers for all resources where possible
Animal observed in or captured from the field:
Provide species, sex and age where possible
Not currently checked by SciScore
Model organisms: Provide Accession number in
repository (where relevant) OR RRID
See laboratory animals section for information.
Plants and microbes Yes (indicate where provided: page no/section/legend) n/a
Plants: provide species and strain, unique accession
number if available, and source (including location for
collected wild specimens)
Not currently checked by SciScore
Microbes: provide species and strain, unique
accession number if available, and source
Not currently checked by SciScore
Human research participants Yes (indicate where provided: page no/section/legend) n/a
Identify authority granting ethics approval (IRB or
equivalent committee(s), provide reference number for
approval.
Not detected.
Provide statement confirming informed consent
obtained from study participants.
Not detected.
Report on age and sex for all study participants. Age:not detected.
Sex:not detected.
Report provided by SciScore | August 12, 2023 | Based on DocumentID 2281_64d790b6422720.49447682
Design
Study protocol Yes (indicate where provided: page no/section/legend) n/a
For clinical trials, provide the trial registration number
OR cite DOI in manuscript.
Not detected.
Laboratory protocol Yes (indicate where provided: page no/section/legend) n/a
Provide DOI or other citation details if detailed step-
by-step protocols are available.
Not detected.
Experimental study design (statistics details) Yes (indicate where provided: page no/section/legend) n/a
State whether and how the following have been done,
or if they were not carried out
Sample size determination not detected.
Randomization not detected.
Blinding not detected.
inclusion/exclusion criteria not required.
Sample definition and in-laboratory replication Yes (indicate where provided: page no/section/legend) n/a
State number of times the experiment was replicated
in laboratory
Not detected.
Define whether data describe technical or biological
replicates
Not detected.
Ethics Yes (indicate where provided: page no/section/legend) n/a
Studies involving human participants: State details of
authority granting ethics approval (IRB or equivalent
committee(s), provide reference number for approval.
Not detected.
Studies involving experimental animals: State
details of authority granting ethics approval (IRB or
equivalent committee(s), provide reference number for
approval.
Not detected.
Studies involving specimen and field samples: State if
relevant permits obtained, provide details of authority
approving study; if none were required, explain why.
Not detected.
Dual Use Research of Concern (DURC) Yes (indicate where provided: page no/section/legend) n/a
If study is subject to dual use research of concern,
state the authority granting approval and reference
number for the regulatory approval
Not currently checked by SciScore
Report provided by SciScore | August 12, 2023 | Based on DocumentID 2281_64d790b6422720.49447682
Analysis
Attrition Yes (indicate where provided: page no/section/legend) n/a
State if sample or data point from the analysis is
excluded, and whether the criteria for exclusion were
determined and specified in advance.
not required.
Statistics Yes (indicate where provided: page no/section/legend) n/a
Describe statistical tests used and justify choice of
tests.
Not detected.
Data availability Yes (indicate where provided: page no/section/legend) n/a
State whether newly created datasets are available,
including protocols for access or restriction on access.
Data Availability statement: Molecular data has been
deposited on Genbank with accompanying accession
numbers as stated earlier.
If data are publicly available, provide accession
number in repository or DOI or URL.
Not detected.
If publicly available data are reused, provide accession
number in repository or DOI or URL, where possible.
Not detected.
Code availability Yes (indicate where provided: page no/section/legend) n/a
For all newly generated code and software essential
for replicating the main findings of the study:
State whether the code or software is available. Not detected.
If code is publicly available, provide accession
number in repository, or DOI or URL.
Not detected.
Report provided by SciScore | August 12, 2023 | Based on DocumentID 2281_64d790b6422720.49447682
Analysis
Adherence to community standards Yes (indicate where provided: page no/section/legend) n/a
MDAR framework recommends adoption of
discipline-specific guidelines, established and
endorsed through community initiatives. Journals have
their own policy about requiring specific guidelines
and recommendations to complement MDAR.
State if relevant guidelines (eg., ICMJE, MIBBI,
ARRIVE) have been followed, and whether a
checklist (eg., CONSORT, PRISMA, ARRIVE) is
provided with the manuscript.
Not currently checked by SciScore
Report provided by SciScore | August 12, 2023 | Based on DocumentID 2281_64d790b6422720.49447682
ACMI-S-23-00255.pdf
By Haris Musah
WORD COUNT 5745 TIME SUBMITTED 12-AUG-2023 03:00PM
PAPER ID 101945729
5
4
5
1 4
1 4
1
5
1 2
2 0
2 6
2 8
1
8
8
8
1 5
3 0
1
1
1
1
2
1 5
1
1
1
2
9
1 1
1 6
1 0
1 9
9
1 3
2 2
2 7
3
7
7
7
2 1
2 9
3 1
1 7
1 8
2 5
2 3
1
1
1
1 2
2 4
1
6
3 2
19%
SIMILARITY INDEX
1
2
3
4
5
6
7
ACMI-S-23-00255.pdf
ORIGINALITY REPORT
PRIMARY SOURCES
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31 words — 1%
24 words — 1%
23 words — 1%
21 words — < 1%
8
9
10
11
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14
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Hungria Pinto, Salomão Antonio Oliveira,
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21 words — < 1%
20 words — < 1%
17 words — < 1%
16 words — < 1%
14 words — < 1%
13 words — < 1%
13 words — < 1%
15
16
17
18
19
20
21
22
23
Haris Sualah Musah, Francis Addy, Osman Adamu
Dufailu. "Surveillance of N. gonorrhoea in Tamale,
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clone detected in red deer (Cervus elaphus) from Portugal",
Science of The Total Environment, 2022
Crossref
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Internet
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Internet
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Brisse, P. Sednaoui. "First Neisseria gonorrhoeae
Genotyping Analysis in France: Identification of a Strain Cluster
12 words — < 1%
12 words — < 1%
11 words — < 1%
10 words — < 1%
9 words — < 1%
9 words — < 1%
9 words — < 1%
9 words — < 1%
8 words — < 1%
24
25
26
27
28
29
30
with Reduced Susceptibility to Ceftriaxone", Journal of Clinical
Microbiology, 2009
Crossref
T. A. Ogunnusi, O. Olorunfemi. "Isolation and
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M. Unemo. "High-level cefixime- and ceftriaxone-
resistant N. gonorrhoeae in Europe (France): novel
penA mosaic allele in a successful international clone causes
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Crossref
Beata Mlynarczyk-Bonikowska, Cezary Kowalewski,
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of Multidrug-Resistant Variants of Neisseria gonorrhoeae",
International Journal of Molecular Sciences, 2022
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8 words — < 1%
8 words — < 1%
8 words — < 1%
8 words — < 1%
8 words — < 1%
7 words — < 1%
6 words — < 1%
31
32
EXCLUDE QUOTES OFF
EXCLUDE BIBLIOGRAPHY ON
EXCLUDE SOURCES OFF
EXCLUDE MATCHES OFF
Irene Martin. "Emergence and Characterization of
Neisseria gonorrhoeae Isolates With Decreased
Susceptibilities to Ceftriaxone and Cefixime in Canada: 2001–
2010 :", Sexually Transmitted Diseases, 12/2011
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Internet
6 words — < 1%
4 words — < 1%