Heterogeneous Severity of COVID-19 in African Countries: A Modeling Approach

Abstract Background: The COVID-19 pandemic has caused tremendous impact on global health and economics. The impact in African countries has not been investigated through fitting epidemic model to the reported COVID-19 deaths.Method: We downloaded data for the twelve most-affected countries with the highest cumulative COVID-19 deaths to estimate the time-varying effective reproduction number (B) and infection attack rate (IAR). We developed a simple epidemic model and fitted the model to reported COVID-19 deaths in 12 African countries, using iterated filtering and allowing flexible transmission rate. Results: We found high heterogeneity in the case-fatality rate across countries, which may be due to different reporting or testing efforts. We found that South Africa, Tunisia, and Libya were hit hardest with a relatively higher a and infection attack rate Conclusion: To effectively control the spread of COVID-19 epidemics in Africa, there is a need to consider other mitigation strategies (such as improvement in socio-economic wellbeing, health care system, water supply, awareness campaigns).