MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis
preprint
OA: closed
CC-BY-4.0
Abstract
Abstract MetaGenePipe (MGP) is an efficient, flexible, portable, and scalable metagenomics pipeline that uses performant bioinformatics software suites and genomic databases to create an accurate taxonomic and functional characterization of the prokaryotic fraction of sequenced microbiomes. Written in the Workflow Definition Language (WDL), MGP produces output that is useful in its default form, or that can be used for further downstream analysis. MGP is a pipeline-development best practice tool which uses Singularity for containerization and includes a setup script that downloads the necessary databases for setup. The source code for MGP is freely available and is distributed under the Apache 2.0 license.
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- europepmc
- last seen: 2026-05-19T01:45:01.086888+00:00
- unpaywall
- last seen: 2026-05-28T02:00:01.590549+00:00
License: CC-BY-4.0