Ultrafast Fly-scan Nano-Tomography on the Seconds Timescale using Deep Learning

preprint OA: closed CC-BY-4.0
📄 Open PDF Full text JSON View at publisher

Abstract

X-ray computed tomography (CT) is an important technique for characterizing the 3D structure of materials, and, has found broad applications in medical imaging, biological research, and material science. Recently, due to the advances in x-ray source technology which provides very high beam intensities, there is great interest in applying CT to track 3D dynamics of samples, sometimes referred as 4D imaging. However, conventional CT reconstruction algorithms require that the sample does not change over the course of the CT data acquisition time, which limits the achievable temporal resolution of CT. The timescale of the sample dynamics being investigated must be much longer than the CT data acquisition time, in order to fulfill the stable sample requirement during data acquisition. At the same time, there is increasing concern about x-ray induced sample damage and undesired x-ray induced interactions. Thus, there is great interest and research to significantly reduce the CT data acquisition time and at the same time, reduce the sample dose. Here, we describe a new machine-learning (ML) based algorithm that significantly reduces CT data acquisition time as well as overall x-ray dose. With this approach, we achieved an ultrafast nano-tomography with sub-10 s data acquisition time and sub-50 nm spatial resolution with a Transmission X-ray Microscope. We applied our new algorithm to study the dynamic morphology changes in a Li-ion battery cathode material under a heating rate of 50 o C/s and found a self-healing of cracks during the sintering process. The proposed reconstruction protocol can be applied to other tomography modalities.
Full text 12,585 characters · extracted from preprint-html · click to expand
Ultrafast Fly-scan Nano-Tomography on the Seconds Timescale using Deep Learning | Research Square window.SnipcartSettings = { analytics: { enabled: false } }; (function() { var accessVector = localStorage.getItem('access_vector') || ''; window.dataLayer = window.dataLayer || []; if (accessVector) { window.dataLayer.push({ user: { profile: { profileInfo: { snid: accessVector } } } }); } })(); (function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-K279D39R'); Browse Preprints In Review Journals COVID-19 Preprints AJE Video Bytes Research Tools Research Promotion AJE Professional Editing AJE Rubriq About Preprint Platform In Review Editorial Policies Our Team Advisory Board Help Center Sign In Submit a Preprint Cite Share Download PDF Article Ultrafast Fly-scan Nano-Tomography on the Seconds Timescale using Deep Learning Jiayong Zhang, Wah-Keat Lee, Mingyuan Ge This is a preprint; it has not been peer reviewed by a journal. https://doi.org/ 10.21203/rs.3.rs-1531489/v1 This work is licensed under a CC BY 4.0 License Status: Published Journal Publication published 16 Nov, 2022 Read the published version in Communications Materials → Version 1 posted You are reading this latest preprint version Abstract X-ray computed tomography (CT) is an important technique for characterizing the 3D structure of materials, and, has found broad applications in medical imaging, biological research, and material science. Recently, due to the advances in x-ray source technology which provides very high beam intensities, there is great interest in applying CT to track 3D dynamics of samples, sometimes referred as 4D imaging. However, conventional CT reconstruction algorithms require that the sample does not change over the course of the CT data acquisition time, which limits the achievable temporal resolution of CT. The timescale of the sample dynamics being investigated must be much longer than the CT data acquisition time, in order to fulfill the stable sample requirement during data acquisition. At the same time, there is increasing concern about x-ray induced sample damage and undesired x-ray induced interactions. Thus, there is great interest and research to significantly reduce the CT data acquisition time and at the same time, reduce the sample dose. Here, we describe a new machine-learning (ML) based algorithm that significantly reduces CT data acquisition time as well as overall x-ray dose. With this approach, we achieved an ultrafast nano-tomography with sub-10 s data acquisition time and sub-50 nm spatial resolution with a Transmission X-ray Microscope. We applied our new algorithm to study the dynamic morphology changes in a Li-ion battery cathode material under a heating rate of 50 o C/s and found a self-healing of cracks during the sintering process. The proposed reconstruction protocol can be applied to other tomography modalities. Full Text Additional Declarations There is NO Competing Interest. Supplementary Files Supportinformation.docx Supporting information Cite Share Download PDF Status: Published Journal Publication published 16 Nov, 2022 Read the published version in Communications Materials → Version 1 posted You are reading this latest preprint version Research Square lets you share your work early, gain feedback from the community, and start making changes to your manuscript prior to peer review in a journal. As a division of Research Square Company, we’re committed to making research communication faster, fairer, and more useful. We do this by developing innovative software and high quality services for the global research community. Our growing team is made up of researchers and industry professionals working together to solve the most critical problems facing scientific publishing. Also discoverable on Platform About Our Team In Review Editorial Policies Advisory Board Help Center Resources Author Services Accessibility API Access RSS feed Manage Cookie Preferences © Research Square 2026 | ISSN 2693-5015 (online) Privacy Policy Terms of Service Do Not Sell My Personal Information {"props":{"pageProps":{"initialData":{"identity":"rs-1531489","acceptedTermsAndConditions":true,"allowDirectSubmit":false,"archivedVersions":[],"articleType":"Article","associatedPublications":[],"authors":[{"id":101226011,"identity":"8a3186c7-a0a5-4806-8745-421c9978a095","order_by":0,"name":"Jiayong Zhang","email":"","orcid":"","institution":"Brookhaven National Laboratroy","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Jiayong","middleName":"","lastName":"Zhang","suffix":""},{"id":101226012,"identity":"dd87ddb7-f530-4160-b9b9-97d0dd9e3973","order_by":1,"name":"Wah-Keat Lee","email":"","orcid":"","institution":"Brookhaven National Laboratory","correspondingAuthor":false,"submittingAuthor":false,"prefix":"","firstName":"Wah-Keat","middleName":"","lastName":"Lee","suffix":""},{"id":101226013,"identity":"80ee6c5c-f450-4272-bd9e-be57aa53beff","order_by":2,"name":"Mingyuan Ge","email":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAZAAAAAyAQMAAABI0h/eAAAABlBMVEX///8AAABVwtN+AAAACXBIWXMAAA7EAAAOxAGVKw4bAAAAvUlEQVRIiWNgGAWjYDACZijNL8HAeIA0LZIzGBiI1AIDBjeI1aLbznv4NW+bXZ7x7d4DBxh+2SQ2ENJidpgvzZq3LbnY7M65hAOMfWnEaOExM+ZtY07cdiPH4ABjz2Fjgg6DaqlP3DyDBC3Gj3nbDidukABqYfhxWI4oWxjnnDueOOPOGYMDiQ1pRGg5f8b4w5uy6sT+2T2GDz78seEhqAUI2KTgyhLbiNEAjP+PP+DsP8RpGQWjYBSMgpEFAKL/QSYbm9AFAAAAAElFTkSuQmCC","orcid":"","institution":"National Synchrotron Light Source II, Brookhaven National Laboratory","correspondingAuthor":true,"submittingAuthor":false,"prefix":"","firstName":"Mingyuan","middleName":"","lastName":"Ge","suffix":""}],"badges":[],"createdAt":"2022-04-07 02:05:33","currentVersionCode":1,"declarations":"","doi":"10.21203/rs.3.rs-1531489/v1","doiUrl":"https://doi.org/10.21203/rs.3.rs-1531489/v1","draftVersion":[],"editorialEvents":[{"content":"https://doi.org/10.1038/s43246-022-00313-8","type":"published","date":"2022-11-16T05:00:00+00:00"}],"editorialNote":"","failedWorkflow":false,"files":[{"id":29173381,"identity":"7dd88838-9f43-4795-8923-07ad138afbae","added_by":"auto","created_at":"2022-11-17 08:09:38","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":1054640,"visible":true,"origin":"","legend":"","description":"","filename":"Manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-1531489/v1_covered.pdf"},{"id":20791230,"identity":"61a0e254-cbe1-4b51-b749-571488324a98","added_by":"auto","created_at":"2022-04-26 17:19:13","extension":"pdf","order_by":1,"title":"","display":"","copyAsset":false,"role":"manuscript-pdf","size":1043769,"visible":true,"origin":"","legend":"","description":"","filename":"Manuscript.pdf","url":"https://assets-eu.researchsquare.com/files/rs-1531489/v1_covered.pdf"},{"id":20791229,"identity":"983e0fec-5461-4c85-bc26-4a97696941d7","added_by":"auto","created_at":"2022-04-26 17:19:01","extension":"docx","order_by":2,"title":"","display":"","copyAsset":false,"role":"supplement","size":8197529,"visible":true,"origin":"","legend":"Supporting information","description":"","filename":"Supportinformation.docx","url":"https://assets-eu.researchsquare.com/files/rs-1531489/v1/9fae69728dd3d9abfbede2f3.docx"}],"financialInterests":"There is \u003cb\u003eNO\u003c/b\u003e Competing Interest.","formattedTitle":"Ultrafast Fly-scan Nano-Tomography on the Seconds Timescale using Deep Learning","fulltext":[{"header":"Full Text","content":"This preprint is available for \u003ca href='/article/rs-1531489/latest.pdf' target='_blank'\u003edownload as a PDF\u003c/a\u003e."}],"fulltextSource":"","fullText":"","funders":[],"hasAdminPriorityOnWorkflow":false,"hasManuscriptDocX":false,"hasOptedInToPreprint":true,"hasPassedJournalQc":"","hasAnyPriority":true,"hideJournal":false,"highlight":"","institution":"","isAcceptedByJournal":true,"isAuthorSuppliedPdf":true,"isDeskRejected":"","isHiddenFromSearch":false,"isInQc":false,"isInWorkflow":false,"isPdf":false,"isPdfUpToDate":true,"isWithdrawnOrRetracted":false,"journal":{"display":true,"email":"[email protected]","identity":"nature-portfolio","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"","sideBox":"","snPcode":"","submissionUrl":"","title":"Nature Portfolio","twitterHandle":"","acdcEnabled":false,"dfaEnabled":false,"editorialSystem":"ejp","reportingPortfolio":"","inReviewEnabled":true,"inReviewRevisionsEnabled":false},"keywords":"","lastPublishedDoi":"10.21203/rs.3.rs-1531489/v1","lastPublishedDoiUrl":"https://doi.org/10.21203/rs.3.rs-1531489/v1","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"manuscriptAbstract":"\u003cp\u003eX-ray computed tomography (CT) is an important technique for characterizing the 3D structure of materials, and, has found broad applications in medical imaging, biological research, and material science.\u0026nbsp;Recently, due to the advances in x-ray source technology which provides very high beam intensities, there is great interest in applying CT to track 3D dynamics of samples, sometimes referred as 4D imaging. However, conventional CT reconstruction algorithms require that the sample does not change over the course of the CT data acquisition time, which limits the achievable temporal resolution of CT. \u0026nbsp;The timescale of the sample dynamics being investigated must be much longer than the CT data acquisition time, in order to fulfill the stable sample requirement during data acquisition. At the same time, there is increasing concern about x-ray induced sample damage and undesired x-ray induced interactions. Thus, there is great interest and research to significantly reduce the CT data acquisition time and at the same time, reduce the sample dose.\u0026nbsp;Here, we describe a new machine-learning (ML) based algorithm that significantly reduces CT data acquisition time as well as overall x-ray dose. With this approach, we achieved an ultrafast nano-tomography with sub-10 s data acquisition time and sub-50 nm spatial resolution with a Transmission X-ray Microscope. We applied our new algorithm to study the dynamic morphology changes in a Li-ion battery cathode material under a heating rate of 50 \u003csup\u003eo\u003c/sup\u003eC/s and found a self-healing of cracks during the sintering process. The proposed reconstruction protocol can be applied to other tomography modalities.\u003c/p\u003e","manuscriptTitle":"Ultrafast Fly-scan Nano-Tomography on the Seconds Timescale using Deep Learning","msid":"","msnumber":"","nonDraftVersions":[{"code":1,"date":"2022-04-26 17:18:59","doi":"10.21203/rs.3.rs-1531489/v1","editorialEvents":[],"status":"published","journal":{"display":true,"email":"[email protected]","identity":"communications-materials","isNatureJournal":true,"hasQc":false,"allowDirectSubmit":false,"externalIdentity":"commsmat","sideBox":"Learn more about [Communications Materials](https://www.nature.com/commsmat/)","snPcode":"","submissionUrl":"","title":"Communications Materials","twitterHandle":"","acdcEnabled":true,"dfaEnabled":true,"editorialSystem":"ejp","reportingPortfolio":"Communications Series","inReviewEnabled":true,"inReviewRevisionsEnabled":false}}],"origin":"","ownerIdentity":"e1e7e758-f76c-4dd6-9912-06ba05a962b3","owner":[],"postedDate":"April 26th, 2022","published":true,"recentEditorialEvents":[],"rejectedJournal":[],"revision":"","amendment":"","status":"published-in-journal","subjectAreas":[],"tags":[],"updatedAt":"2022-11-17T08:09:27+00:00","versionOfRecord":{"articleIdentity":"rs-1531489","link":"https://doi.org/10.1038/s43246-022-00313-8","journal":{"identity":"communications-materials","isVorOnly":false,"title":"Communications Materials"},"publishedOn":"2022-11-16 05:00:00","publishedOnDateReadable":"November 16th, 2022"},"versionCreatedAt":"2022-04-26 17:18:59","video":"","vorDoi":"10.1038/s43246-022-00313-8","vorDoiUrl":"https://doi.org/10.1038/s43246-022-00313-8","workflowStages":[]},"version":"v1","identity":"rs-1531489","journalConfig":"researchsquare"},"__N_SSP":true},"page":"/article/[identity]/[[...version]]","query":{"redirect":"/article/rs-1531489","identity":"rs-1531489","version":["v1"]},"buildId":"-HB7Z8yhvgn0wM9Nzuekk","isFallback":false,"isExperimentalCompile":false,"dynamicIds":[84888],"gssp":true,"scriptLoader":[]}

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: preprint-html

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00
unpaywall
last seen: 2026-05-27T02:00:06.600101+00:00
License: CC-BY-4.0